LOCUS       NM_001271452            3837 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus DExH-box helicase 34 (Dhx34), mRNA.
ACCESSION   NM_001271452 XM_001062397
VERSION     NM_001271452.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3837)
  AUTHORS   Longman,D., Hug,N., Keith,M., Anastasaki,C., Patton,E.E., Grimes,G.
            and Caceres,J.F.
  TITLE     DHX34 and NBAS form part of an autoregulatory NMD circuit that
            regulates endogenous RNA targets in human cells, zebrafish and
            Caenorhabditis elegans
  JOURNAL   Nucleic Acids Res 41 (17), 8319-8331 (2013)
   PUBMED   23828042
REFERENCE   2  (bases 1 to 3837)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 3837)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Sep 26, 2012 this sequence version replaced XM_001062397.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: SRR26643295.1049.1 [ECO:0000331]
            RNAseq introns       :: partial sample support SAMEA5760383,
                                    SAMEA5760386 [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-33                JAXUCZ010000001.1  86033261-86033293   c
            34-964              JAXUCZ010000001.1  86029844-86030774   c
            965-1276            JAXUCZ010000001.1  86027853-86028164   c
            1277-1531           JAXUCZ010000001.1  86026639-86026893   c
            1532-1634           JAXUCZ010000001.1  86025717-86025819   c
            1635-1852           JAXUCZ010000001.1  86024223-86024440   c
            1853-2027           JAXUCZ010000001.1  86022012-86022186   c
            2028-2221           JAXUCZ010000001.1  86017972-86018165   c
            2222-2323           JAXUCZ010000001.1  86017389-86017490   c
            2324-2557           JAXUCZ010000001.1  86015707-86015940   c
            2558-2731           JAXUCZ010000001.1  86015335-86015508   c
            2732-2849           JAXUCZ010000001.1  86014909-86015026   c
            2850-2956           JAXUCZ010000001.1  86013567-86013673   c
            2957-3241           JAXUCZ010000001.1  86011444-86011728   c
            3242-3418           JAXUCZ010000001.1  86010652-86010828   c
            3419-3554           JAXUCZ010000001.1  86010373-86010508   c
            3555-3837           JAXUCZ010000001.1  86009047-86009329   c
FEATURES             Location/Qualifiers
     source          1..3837
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..3837
                     /gene="Dhx34"
                     /note="DExH-box helicase 34"
                     /db_xref="GeneID:684903"
                     /db_xref="RGD:1584452"
     exon            1..33
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
     exon            34..964
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
     CDS             257..3688
                     /gene="Dhx34"
                     /EC_number="3.6.4.13"
                     /note="DEAH (Asp-Glu-Ala-His) box polypeptide 34; DEAH-box
                     helicase 34"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DHX34"
                     /protein_id="NP_001258381.1"
                     /db_xref="GeneID:684903"
                     /db_xref="RGD:1584452"
                     /translation="MPPPRTREGRDHRDRDHHRAPRKEEAPEKWDWNCPETRCLLEDV
                     FFRDEDYIRRGSEECQKFWAFFERLQKYQHLKTSQKEKDPGQPKHGIAALADLPCTYD
                     PRYRINLSILGPDTRGRHGPGKGLPPERVSEFRRALLHYLDFQQKQAFGRLAKLQRER
                     AALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSHVACTQPRRIAC
                     ISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQCEPRLPQYQV
                     LIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSYFSHAPVVQVPG
                     RLFPITVVYQPQEAEQSASKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSGMAEI
                     STVLDAAQAYATLTQRWVVLPLHSALSVADQDKVFDVAPAGVRKCILSTNIAETSVTI
                     DGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCYRLYAES
                     DYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPAASVETAILYLQDQG
                     ALDSSEALTPIGSLLAQLPVDVVIGKMMILGSMFSLAEPVLTIAAALSVQSPFTRSAQ
                     SNLDCATARRPLESDQGDPFTLFNVFNAWVQVKSERSGNSRKWCRRRGVEEHRLYEMA
                     NLRRQFKELLEDHGLLRGAQVVAPRDSYSRLQQRRERQTLHQLKRQHEEGGGRRRKVL
                     RLQEDGCSSDEDHEGSASQRADSVDIQDVKFKLRHNLEQLQAAASSAQDLTRDQLALL
                     KLVLGRGLYPQLAVPDAFNSGRKDSDQIFHTQAKQGTVLHPTCVFANSPEVLHTQGPE
                     ASGREGSQDGKDQMSCKHQLLAFVSLLETNKPYLVNCVRIPALQSLLLFSRSIDTNGD
                     CSRLVADGWLELQLADSESAVRLLATSLRLRAHWESALDRQLAQQAQRRKLEQEEDPE
                     SPAVSPQEVAALSRELLQFMAAKVPYRLRRLTGLEAQNLYVGPQTITTAPSLPGLFGN
                     SILSPHPTKGGYAVSDYLTYNCLTSDTDLYSDCLRSFWTCPHCGLHMPFTPLERIAHE
                     NTCPEAPSDGPGSEEAAPVPTQKTSALQRPYHCQVCGQDFLFTPTEVLRHRRQHV"
     exon            965..1276
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
     exon            1277..1531
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
     exon            1532..1634
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
     exon            1635..1852
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
     exon            1853..2027
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
     exon            2028..2221
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
     exon            2222..2323
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
     exon            2324..2557
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
     exon            2558..2731
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
     exon            2732..2849
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
     exon            2850..2956
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
     exon            2957..3241
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
     exon            3242..3418
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
     exon            3419..3554
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
     exon            3555..3837
                     /gene="Dhx34"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accggaagtt gaggcgtccg cgctatttcg gaggacctgg aagtccagaa tgaacccttg
       61 tcccttccag agatcactgc aggagtcatg aagtgctttg ggcgtcccca cctacccacc
      121 agacccctgg ctaccctccc tgccatccac agtgcccctg tacaaggaaa ggagagttca
      181 ctctttgaag agaaagcagt tcttgggtgt gggagctagg tgagactact ttagtgacag
      241 cactttgata ggaaccatgc ctcctcccag gacaagggag gggagggacc accgagaccg
      301 agaccaccat cgagctccca ggaaggaaga ggccccggag aaatgggact ggaattgtcc
      361 agagactcgt tgcctcttgg aagatgtatt cttccgcgat gaggattata tccgccgtgg
      421 ttcagaggag tgtcagaagt tctgggcttt ctttgaacgc ctgcagaaat accagcacct
      481 caagacctcc cagaaggaga aggaccctgg tcagcccaaa catggcatcg ctgctttagc
      541 tgacctacct tgcacttatg acccacgcta ccgcatcaac ctctccattc tcggcccgga
      601 cactcggggt cgtcatgggc ccggcaaggg gctgcccccc gaaagagtgt ctgaatttcg
      661 ccgtgcactg cttcactacc tagacttcca gcagaagcaa gcttttgggc ggctcgccaa
      721 acttcagcgt gaacgtgccg cgcttcccat cgcccagtac gggaaccgca tcctacagac
      781 gctgaaggaa caccaggtgg tggtggtggc cggggacacg ggctgtggca agtccactca
      841 ggtgccccag tacttactag ctgccggctt cagtcacgtg gcatgcaccc agccccggag
      901 aatcgcctgc atctcactgg ccaagcgagt tggcttcgag agcctcagtc agtatggctc
      961 ccaggttggc taccagatcc gctttgaaag cactcggtca gcagccacca agattgtgtt
     1021 cctgacggtg gggctgctcc ttcgccagat ccagtgtgag cccaggctgc cccagtacca
     1081 ggtcctgatt gtggatgagg tgcacgagcg acacctgcac aatgacttcc tgttgggcgt
     1141 cctgcagcgc ctgctgcccc aacggcctga cctcaaggtc atcctcatgt cggccaccat
     1201 caacatctct ctcttctcca gctacttcag ccatgctcct gtggtgcagg tgcctgggag
     1261 gctcttcccc attacggtgg tgtaccagcc gcaggaggca gagcagtcag catccaagtc
     1321 agagaagctg gacccacggc ctttcctgag ggtgctggag gccatcgaca ataagtatcc
     1381 ccccgaggag cggggagacc tcctcgtctt cctcagtggc atggcagaga tcagcacggt
     1441 gctggatgct gcccaggctt atgccaccct cacccagcgc tgggtggtgc tgccgctgca
     1501 cagcgccctc tctgtggccg accaggacaa ggtgttcgat gtggctccag ctggcgtacg
     1561 gaagtgcatc ctgtccacca acattgcaga gacctcagtc accatcgacg gcatccgctt
     1621 tgtggtggat tctgggaagg tgaaggagat gagttatgac ccacaggcca aactgcagcg
     1681 gctgcaggaa ttctggatca gccaggccag cgctgagcag cgcaagggcc gagcgggccg
     1741 cacgggcccc ggtgtctgct accgcctcta tgccgaatcc gactatgatg cctttgctcc
     1801 gtacccagtc ccggaaattc gtagggtggc cctggatgca ttggtgcttc agatgaagag
     1861 tatgagtgtg ggggacccac gcaccttccc cttcatcgag ccccctccag ctgccagcgt
     1921 ggagactgct atcctctatc ttcaagacca gggggccctg gacagctcgg aggccctcac
     1981 ccccatcggg tccctgctgg ctcagctgcc tgtagacgtt gtgattggga agatgatgat
     2041 cctgggctcc atgttcagcc tggcagagcc tgtgctcacc attgctgctg ctctcagcgt
     2101 ccagtcacca ttcacccgca gtgcccagag caacctggac tgtgccactg cccggaggcc
     2161 gctggaaagc gaccagggtg accccttcac gctcttcaat gtcttcaatg cctgggtgca
     2221 ggtgaagtct gagcggagcg gaaactctcg caagtggtgc cgccgccggg gtgtggagga
     2281 gcaccggttg tatgagatgg ccaacctacg gcgacagttc aaggagctgt tggaggatca
     2341 tgggctgctg aggggggccc aggtagtagc cccaagggac agctacagtc ggctgcagca
     2401 gcggcgagag cgccagaccc tgcatcagct gaagaggcag catgaggagg gtgggggacg
     2461 caggcgcaag gtactgaggc tgcaggaaga cggctgctcc agcgacgagg accatgaggg
     2521 ctctgcctcc cagcgggctg acagcgttga catccaggat gtgaaattca agcttcgcca
     2581 caacctggag caactccagg cagctgccag ctcagcccag gacctgaccc gagaccagct
     2641 ggccctgctc aagctggtgc ttgggcgggg cctgtaccca cagctggctg tgcccgatgc
     2701 attcaacagt ggccgcaagg actcggacca gattttccac acgcaggcca agcagggcac
     2761 cgtgctgcac cccacctgtg tctttgccaa cagccctgag gtactgcaca cacaggggcc
     2821 ggaggcctca ggccgagaag ggagccaaga cggcaaggac caaatgagct gcaagcacca
     2881 gctgctggcc ttcgtctccc tgctggagac caacaagcca tacctggtga actgcgtccg
     2941 catccccgcc ctccagtccc tcctgctgtt cagccgctcc atcgacacca atggcgactg
     3001 ctcccgcctg gtggctgacg gttggctgga gctgcagctc gcagatagtg agagtgctgt
     3061 ccggctcctg gcaacctccc tacggctccg tgcccactgg gagagtgccc tggaccggca
     3121 gctggcccag caggcccagc gacggaagct ggagcaggag gaagacccgg agtctccagc
     3181 agtcagcccc caggaggtgg ctgctctcag cagggagttg ctgcagttca tggcggccaa
     3241 ggttccctac cgcctccgaa ggctcactgg tctagaagcc cagaacctct atgtgggacc
     3301 tcagaccatc acgaccgccc ctagtctccc cggtctcttt ggaaattcta tcttgtcccc
     3361 acaccccacc aaggggggct acgctgtctc tgattatctc acctacaact gcctcacgag
     3421 tgacactgac ctgtacagtg actgtctgcg ctccttctgg acttgcccac actgtggcct
     3481 gcacatgccc tttacacctc tggagcgcat tgctcatgag aacacctgcc ctgaggcgcc
     3541 gagtgatggt ccagggtctg aggaggctgc tcctgtacca acgcagaaga catcagccct
     3601 gcagaggccc taccactgtc aggtgtgcgg gcaggacttc ctcttcactc ccacggaggt
     3661 gctgagacat cgaaggcagc atgtgtgagc cggcacctca tggccagagc tcccctgagc
     3721 accccaagtg ggggtcagac atgtgtccag gcaaataaag tcagactttg cttcagaacc
     3781 tgtgcctccc tcagtgggaa gaaacacagc ctgtcttcat cagggcaagc ttttttt
//
