LOCUS       XM_002729007            4503 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DExH-box helicase 29 (Dhx29),
            transcript variant X1, mRNA.
ACCESSION   XM_002729007
VERSION     XM_002729007.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 26, 2024 this sequence was replaced by
            NM_001427514.1.
            
            On Jan 21, 2021 this sequence version replaced XM_002729007.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4503
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4503
                     /gene="Dhx29"
                     /note="DExH-box helicase 29; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 21
                     ESTs, 4 long SRA reads, 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 177 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100362324"
                     /db_xref="RGD:2318361"
     CDS             159..4259
                     /gene="Dhx29"
                     /codon_start=1
                     /product="ATP-dependent RNA helicase DHX29 isoform X1"
                     /protein_id="XP_002729053.2"
                     /db_xref="GeneID:100362324"
                     /db_xref="RGD:2318361"
                     /translation="MGGKNKKHKAPGAAAMRAAVSASRARSAEAGAVGEAQSKKPVAR
                     PAPAVPTSAREPRVKQGPKIYSFNSANDSGGSANLDKSILKVVINNKLEQRIIGVINE
                     HKKQNNDRGVISGRLSAKKLQDLYMALQAFSFKTKDIEDAMTNTLLHGGDLHSALDWL
                     CLNLSDDALPEGFSQEFEEQQPKSRPKFQSVQIQATLSPPLQTKTKRQEEDPKIKPKK
                     EEKSMEVNMKEWILRYAEQQNEEEKSEGSKGSEDEDKFDPNQRYLNLAARLLDAKEQA
                     AAFKVEKNKQGQKEAQEKIRKFQREMETLEDHPIFNPAIKISHQQNERKKAPLATDGE
                     SALNFNLFEKPAAATEEEKGKKKEPHDVRNFDYTARSWTGKSPKQFLIDWVRKNLPKS
                     PNPSFEKVPVGRYWKCRVRVVKSEDDVLVVCPTILTEDGMQAQHLGATLALYRLVKGQ
                     SVHQLLPPTYRDVWVEWSDEEKKKEELNKMETNKPRDLFIAKLLSKLKQQQQLQQQRQ
                     HPENKTETAEDPEESWENLVSDEDLSALSLEPTGAEDLEPVRNLFRRLQSTPKYQRLL
                     KERQQLPVFKHRASIVETLKRHRVVVVAGETGSGKSTQVPHFLLEDLLLNDCGARKCN
                     IVCTQPRRISAVSLATRVCEELGCEGGPGGRNSLCGYQIRMESRASESTRLLYCTTGV
                     LLRKLQEDGLLADVSHVIVDEVHERSVQSDFLLVILKEILQKRSDLHLILMSATVDSD
                     KFSTYFTHCPILRISGRSYPVEVFHLEDIVEETGFILEKDSEYCQKFLEEEEEITINV
                     TSKAGGIKKYQECIPVQSGASPELSPFYQKYSSRTQYAVLYMNPHKINLDLILELLVY
                     LDKSPQFRNIEGAVLIFLPGLAHIQQLYDLLSNDRRFYSERYQLIALHSVLSTQDQAA
                     AFMLPPPGVRKIVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSK
                     ASALQRQGRAGRVRDGFCFRLYTRERFEGFLEYSVPEILRVPLEELCLHIMKCDLGSP
                     EDFLSKALDPPQPQVISNAMNLLRKIGACEPSEPKLTPLGQHLAALPVNVKIGKMLIF
                     GAIFGCLEPVATLAAVMTEKSPFITPIGRKDEADLAKSSLAVADSDHLTIYNAYLGWK
                     KAQQEGGFRSEISYCQRNFLNRTSLLTLEDVKQELMKLVRAAGFSSSTSWEGKKGPQA
                     LSFQDIALLKAVLAAGLYDSVGKIMCTKSVDVTEKLACMVETAQGKAQVHPSSVNRDL
                     QTYGWLLYQEKVRYARVYLRETTLITPFPVLLFGGDIEVQHRERLLSVDGWIYFQAPV
                     KIAVIFKQLRVLIDSVLRKKLENPKMSLENDKILQIITELIKTENN"
ORIGIN      
        1 gatgaaaggg accaattgag cctgagcgcc agccgtggag cccggatgga ggaggctggg
       61 tggaggcgtg ggagccggca aacgtgaaga gctctccggc ttctgctgtg cggcagccgg
      121 gatctggatc tggaagacta ctctccaaca gctgaaatat gggcggcaaa aataagaaac
      181 acaaggcgcc gggagctgcg gcgatgcggg ccgcggtgtc tgcttccaga gccagaagtg
      241 cagaggccgg agctgttggg gaagcccaga gcaagaagcc ggtggccagg ccggcgcctg
      301 ctgtccccac tagcgcccgg gagccccgag tcaagcaagg cccaaaaatt tatagtttta
      361 attctgcaaa tgattccggt ggctctgcaa atctggacaa atctattttg aaagtggtga
      421 ttaataataa gctagagcaa agaattatcg gagtgatcaa tgagcataaa aagcagaaca
      481 atgacagggg agtgatttct ggaagactgt ctgctaaaaa gttacaggat ttatacatgg
      541 ctctgcaagc attttccttt aagactaagg atattgaaga tgcgatgacc aatacactct
      601 tgcatggagg tgaccttcat tctgccttgg attggctctg cttaaatctt tcagacgatg
      661 cacttcctga aggattcagt caagaatttg aagagcaaca acctaaaagt aggccaaaat
      721 tccagtctgt acaaatacag gctactcttt cacctcctct gcagacgaaa accaaaagac
      781 aggaggaaga ccctaaaatt aagccaaaaa aggaagaaaa aagtatggag gtgaatatga
      841 aagagtggat tttgagatac gccgagcagc agaatgaaga ggaaaagagc gagggttcta
      901 aaggctcgga ggacgaggac aagtttgacc ctaaccaaag gtacttgaac cttgcagcca
      961 gacttctgga cgcaaaggag caagcagctg ccttcaaagt agaaaaaaac aagcaaggcc
     1021 agaaagaggc tcaagagaaa ataagaaagt ttcaaagaga aatggaaact ctggaagacc
     1081 atccaatatt caacccagcc ataaagattt cacatcaaca gaatgagagg aaaaaggccc
     1141 ctctagccac agacggtgaa agtgctttaa actttaactt atttgaaaag cctgcagctg
     1201 ctactgaaga agagaaaggt aaaaagaaag aacctcatga tgtaagaaac tttgactaca
     1261 ctgctcgaag ctggactgga aaatctccca aacaattcct tatcgattgg gtcaggaaga
     1321 atcttcccaa gagtccaaat ccttcctttg agaaagttcc agtaggtaga tactggaaat
     1381 gtagggtaag agtcgtcaag tctgaagatg atgtactggt tgtctgtcct acaatcttaa
     1441 cggaggacgg catgcaagct cagcacctgg gagcgacatt agccctttat cgtctagtga
     1501 aagggcagtc cgtgcatcag ttactccctc ccacgtaccg ggatgtttgg gtggagtgga
     1561 gcgatgaaga aaagaaaaag gaggaactga ataaaatgga aaccaataaa cctcgggacc
     1621 tctttattgc caagctactg agtaagttga agcagcagca gcaactgcag cagcagcgac
     1681 agcatcctga aaataagacg gagaccgcgg aggatccaga ggagtcttgg gaaaacttgg
     1741 tttcggatga ggatctgtct gcactgtcct tggagcccac aggtgcagaa gacctggagc
     1801 ccgttaggaa cctcttcagg aggctgcaga gcacacccaa gtatcagaga ctcctgaagg
     1861 aacggcagca gctgcctgtg ttcaaacacc gggcctcgat cgtggaaacc ctcaagcggc
     1921 accgggttgt ggtcgtggca ggggaaacag ggagtggcaa gagcacccag gtacctcatt
     1981 tcctgttgga agatctgctt ctaaatgact gcggagccag gaagtgtaac atagtctgca
     2041 cccagccccg gagaatctca gcagtgagct tagccaccag ggtgtgcgag gagctgggct
     2101 gtgaaggcgg acctggagga aggaattctt tgtgtggcta tcagatccgg atggaatctc
     2161 gagctagtga atctacccgg ctgctgtact gtacaaccgg agttttgcta aggaaacttc
     2221 aggaagatgg ccttctggct gatgtgtctc atgtcattgt ggatgaggtc catgagagaa
     2281 gcgtccagtc agatttcctg ctcgttatcc tgaaggaaat tttacagaaa cgttctgacc
     2341 tacacttgat tctgatgagc gccactgtgg acagcgacaa gttctccacg tacttcacac
     2401 actgtcctat tctcagaatt tcaggaagaa gctaccctgt tgaggttttt catctggaag
     2461 acatagtaga agaaacaggc ttcatattgg agaaggattc tgagtattgt cagaagtttc
     2521 tggaggagga ggaagaaatt accattaatg ttacaagtaa agccggggga atcaaaaagt
     2581 atcaggaatg catcccagtt cagagtggag cgagtcctga attaagtccg ttctaccaga
     2641 agtacagtag ccgtactcag tatgctgtcc tctacatgaa ccctcacaaa atcaacctgg
     2701 acctcatttt ggagcttctt gtatacttag acaaaagtcc tcagttcaga aatattgaag
     2761 gagcagtatt gatcttctta cctggccttg ctcacattca acagttgtat gatctcctat
     2821 caaatgacag aagattttat tctgagcgat atcaacttat agctctgcac tccgttctct
     2881 caactcagga tcaagcggca gctttcatgc ttccccctcc aggggtcagg aagattgtct
     2941 tagcaacaaa catcgcagag acggggatca cgattcctga tgtcgtgttt gtcatcgaca
     3001 ctggaagaac aaaagaaaat aagtaccatg aaagcagcca gatgagttcc ttggtggaga
     3061 cctttgtcag taaagctagt gccctgcagc gccaggggag agctgggagg gtccgggacg
     3121 gcttctgctt ccggctgtac acgagagaaa gatttgaagg ttttctggag tattctgtac
     3181 ctgaaatcct gcgtgtgcct ctggaggagc tatgtcttca cattatgaaa tgtgatctgg
     3241 gctctcctga agactttctc tccaaagcct tagaccctcc tcagcctcaa gtcatcagca
     3301 atgcaatgaa tttactccgg aaaattggag cctgtgaacc cagtgagccc aaactgactc
     3361 ccctgggcca gcaccttgcc gctttgcctg tcaatgtcaa aatcggcaag atgctcattt
     3421 tcggagccat atttggctgt cttgaaccag tggcaaccct ggcggctgtg atgacagaga
     3481 agtctccttt catcacacca attggtcgaa aggatgaagc agaccttgca aagtcatctt
     3541 tggctgtggc cgattcggat cacctcacga tctacaatgc atatctcggg tggaagaaag
     3601 ctcagcaaga aggaggcttc cgctctgaga tctcctattg ccagaggaac ttcctcaaca
     3661 gaacatcgct gctgacacta gaggatgtga agcaggaatt aatgaagttg gtgagagcag
     3721 caggattttc atcctctacc agctgggaag gaaagaaagg cccacaggcg ctctcttttc
     3781 aagacatcgc ccttcttaaa gctgtgctgg ctgccggact atacgacagc gtggggaaga
     3841 ttatgtgtac aaagtcagtg gacgtgacgg aaaagctggc atgcatggtg gagactgccc
     3901 aaggcaaggc acaagtgcac ccgtcctctg taaaccgtga tctacaaact tacgggtggc
     3961 tcttgtacca ggagaaggtg aggtatgcca gagtctattt gagagaaacg acccttataa
     4021 cgcctttccc agttctgctc tttggagggg acatagaagt ccagcaccga gagcggcttc
     4081 tgtctgtgga tggctggatc tattttcagg ccccagtaaa gatagctgtt atttttaagc
     4141 agctaagagt tctcattgat tctgttttaa gaaaaaaact tgaaaatcca aagatgtccc
     4201 ttgaaaatga caagattcta cagatcatta cagaattgat aaaaacagag aataactgat
     4261 gctggaatcc atgattacct gcttctacag ttaagataaa gatacggtcc tgaaattatg
     4321 tgaaggtcgg ctatcccatt acgtatttca ttgcctgaag tgttggtact agccattagc
     4381 ctgaagacgg gggtggggaa agcacattct atcaacctgg acttttctag ctcctttgta
     4441 atgatgatga tgctcaatgt atttgccatg acatttacaa taaattcttt ggtatcaatc
     4501 cta
//
