LOCUS       XM_017596852            5716 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus diacylglycerol kinase, delta (Dgkd),
            transcript variant X1, mRNA.
ACCESSION   XM_017596852
VERSION     XM_017596852.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 25, 2024 this sequence was replaced by
            NM_001427452.1.
            
            On Jan 21, 2021 this sequence version replaced XM_017596852.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5716
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5716
                     /gene="Dgkd"
                     /note="diacylglycerol kinase, delta; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 37
                     ESTs, 4 long SRA reads, 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 219 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:368088"
                     /db_xref="RGD:1563309"
     CDS             39..3701
                     /gene="Dgkd"
                     /codon_start=1
                     /product="diacylglycerol kinase delta isoform X1"
                     /protein_id="XP_017452341.2"
                     /db_xref="GeneID:368088"
                     /db_xref="RGD:1563309"
                     /translation="MAAAAGAPPPGPPQPPPPPPPEESSDSEPEAEPGSPQKLIRKVS
                     TSGQIRQKTILKEGMLTKQNNSFQRSKRRYFKLRGRTLYYAKTAKSIIFDEVDLTDAS
                     VAESSTKNVNNSFTVITPCRKLILCADNRKEMEDWIAALKTVQNKEHFEPTQYSMDHF
                     SGTHNWYACSHARPTYCNVCREVLSGVTSHGLSCEVCKFKAHKRCAVRATSNCKWTTL
                     ASIGKDIIEDEDGIAMPHQWLEGNLPVSAKCIVCDKTCGSVLRLQDWRCLWCKAMVHT
                     SCKESLVMKCPLGLCKVSVIPPTALNSIDSDGFWKATCPPSCTSPLLVFVNSKSGDNQ
                     GVKFLRRFKQLLNPAQVFDLMNGGPHLGLRLFQKFDTFRILVCGGDGSVGWVLSEIDS
                     LNLHKQCQLGVLPLGTGNDLARVLGWGSACDDDTQLPQILAKLERASTKMLDRWSVMA
                     YETKLPRQASSSTVTEDCSEDSEVQQILFYEDSVAAHLSKILTSDQHSVVISSAKVLC
                     ETVKDFVARVGKAYEKTTESSQESEVMAKKCSVLKEKLDSLLKTLDDESQASSSLSNP
                     PPTIAEEAEDGDGSGNICSSTGDHLVGSACPSRPQIFRPREQLMLRANSLKKAIRQII
                     EHTEKAVDEQNAQTQEQQGFVLGLSESEKKDLKTDNRVCTSSAHSESCVVAKGRSHRK
                     ASRTPCEKLMSKGLSLGSSASLPPNTGSRDSLPALNTKILYPSVRAGMSGSLPGGSVI
                     SRLLINADPFNAEPENLEYYTEKCVMNNYFGIGLDAKISLDFNNKRDEHPEKCRSRTK
                     NMMWYGVLGTKELLHRTYRNLEQKVLLECDGRPIPLPSLQGIAVLNIPSYAGGTNFWG
                     GTKEDDTFAAPSFDDKILEVVAVFGSMQMAVSRVIKLQHHRIAQCRTVKISILGDEGV
                     PVQVDGEAWIQPPGYIRIVHKNRAQTLTRDRAFENTLKSWEDKQKCELPRPPSFSLHP
                     EILSEEEATQMDQFGQAAGSLIHSIREIAQSHRDMEQELAHAVNASSKAMERVYGKPR
                     AAEGLNCSFVLEMVNNIRALRSETELLLAGKMALQLDPPQKERLGAALVEMDQQLRKL
                     TDTPWLCQPMEPGEEESLQQNVMLDLTKRSRSGKFRLVTKFKKEKNNKNKEVHSYLGA
                     PVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSELLHLERRDLKDLGVTKVGHMKRI
                     LCGIKELSRSSPAAEA"
ORIGIN      
        1 cgccccgccc cccgcggcgc gcgcgctggc cgggcagcat ggcggcggcg gcgggcgccc
       61 ctccgccggg tccgcctcag ccacctccgc cgccgccgcc tgaggagtcg tccgacagcg
      121 aacccgaggc tgagccgggc tccccgcaga agcttattcg taaggtgtcc acgtcgggcc
      181 agatccggca gaagaccatc ctcaaagagg gcatgctgac caaacagaac aactcgttcc
      241 agcgatcgaa gaggaggtac tttaaacttc gagggcgaac actctactat gctaaaacag
      301 caaagtcgat tatatttgat gaggtagacc tgactgatgc cagcgtggca gagtccagca
      361 ccaaaaatgt caacaacagt ttcacggtca tcactccttg taggaagctc atcttgtgtg
      421 ctgacaacag gaaagaaatg gaagattgga ttgcagcact caagactgtc cagaacaaag
      481 agcattttga gcctacccag tacagcatgg accatttctc agggacgcat aactggtacg
      541 cttgttccca cgcacggcca acctactgca acgtgtgtcg ggaagttttg tctggggtca
      601 catcccatgg gctatcctgt gaagtgtgta agtttaaggc tcacaagcgg tgtgctgtgc
      661 gtgcaaccag taactgcaag tggaccacac tggcctcgat tggaaaggat atcattgagg
      721 acgaggatgg gatcgccatg cctcaccagt ggctggaagg aaacctgcct gtgagtgcca
      781 agtgtattgt gtgtgacaag acttgtggca gcgtattgcg cctgcaggac tggcgctgcc
      841 tctggtgcaa ggccatggtt cacacatctt gtaaagagtc cttggtgatg aagtgtccac
      901 ttggcctatg caaggtgtct gtcatccctc ccacagcact caacagtatt gactccgatg
      961 ggttctggaa ggccacctgt cccccatctt gcacaagccc cctgctggtc tttgtcaatt
     1021 caaaaagtgg agacaatcaa ggtgtgaagt ttctcagaag attcaagcag ctgctgaacc
     1081 ctgcccaggt ttttgacctc atgaatggag gaccacacct tggcttacga ttatttcaga
     1141 agtttgacac cttccggatt ctggtttgtg gcggggatgg cagtgttggc tgggtcctct
     1201 ctgaaattga cagcctcaac cttcacaaac agtgtcagct aggtgtgctg cccctgggga
     1261 cagggaatga cctggcccgc gttctcggct ggggctctgc ctgtgatgac gatacacagc
     1321 tccctcagat cttggcaaag ctggagaggg ccagcactaa gatgctggac aggtggagtg
     1381 tcatggcata tgagaccaag ctccctcggc aagcctcctc ctccacggtc actgaggact
     1441 gcagtgagga ctcagaggtg cagcaaattc tcttctatga agactcagtt gcagcccatc
     1501 tttctaaaat cttgacttcg gaccaacatt ctgtggtgat ctcatcagcc aaagtgctct
     1561 gtgagacagt gaaggacttt gtggctcgag tgggcaaggc ttatgagaag acgacagaga
     1621 gctcacagga gtcagaagtc atggccaaga agtgctctgt cttgaaagag aaactggact
     1681 ctctccttaa gaccttggat gatgaatctc aggcttcatc ctctttgtcc aacccacctc
     1741 ctaccattgc tgaggaggct gaggacgggg atggatcagg caacatctgt agttccactg
     1801 gggaccattt ggtgggctca gcgtgtccct ccaggccaca gatcttccga ccccgggagc
     1861 agctaatgct gagagccaac agcctgaaga aagcaattcg ccagattata gagcacacag
     1921 aaaaagcggt ggatgagcag aatgcccaga cccaggagca gcagggtttt gtccttggcc
     1981 tatctgaatc tgagaagaag gacttgaaaa ctgacaatag ggtgtgcaca tcatctgccc
     2041 atagtgagag ctgtgtggta gccaagggga ggagtcaccg caaagcatcc aggacccctt
     2101 gtgaaaagct gatgagcaaa ggtctgtcac ttggcagctc tgcttcactc cctcccaata
     2161 caggaagccg ggacagcctg cctgctctga acaccaagat cctatatcca agtgttcggg
     2221 cagggatgtc tggttccttg ccagggggct cagtcatcag ccgcttgtta attaatgctg
     2281 atccctttaa tgctgaacct gaaaacctag agtactacac agagaagtgt gtcatgaaca
     2341 actattttgg cattggcttg gacgcaaaga tatctctaga ctttaacaac aagcgtgatg
     2401 aacacccaga gaaatgcagg agtcggacta agaacatgat gtggtacggt gtccttggga
     2461 ccaaagaact gcttcacaga acctacagga acctggaaca aaaggtcctg ctggagtgtg
     2521 atgggcgccc gattcccctc ccaagtcttc agggaattgc tgtcctcaac attcccagct
     2581 atgctggagg gaccaacttc tgggggggca ccaaggaaga tgatactttt gcagctccat
     2641 cattcgatga taagattctg gaggtggtcg ctgtgttcgg cagcatgcag atggctgtgt
     2701 ctcgtgtaat taagctacaa catcatcgaa ttgcccagtg tcgcacagtg aagatctcca
     2761 tcctggggga tgagggcgtg cctgtgcagg tggatgggga agcctggatc cagccacctg
     2821 ggtacattcg gattgtgcac aagaacaggg cacagactct gaccagagac agggcctttg
     2881 agaacaccct caagtcttgg gaagacaaac agaagtgtga gctgccccgc ccaccatcct
     2941 tttccctgca ccctgagatc ctgtctgagg aggaagcgac ccagatggat cagtttgggc
     3001 aggcagcggg gagcctcatt cacagcattc gggaaatagc gcagtcccac agagacatgg
     3061 aacaggaact cgcacatgct gtcaacgcca gctccaaagc catggagcga gtgtacggca
     3121 agcccagagc tgcagagggg ttgaactgca gctttgttct ggagatggtg aataacatca
     3181 gagcactgcg cagtgagaca gagctgctgc tggctgggaa gatggccctg cagttggatc
     3241 cccctcagaa ggaacggctt ggggctgccc tagttgagat ggaccagcag ctcaggaagc
     3301 tgacagacac tccctggctt tgccagccca tggagcctgg tgaggaagag tctctccaac
     3361 agaatgtgat gctggatctt actaaacgca gccgcagtgg taaattccgc cttgtgacca
     3421 agtttaaaaa ggagaaaaac aataagaaca aagaagttca cagttaccta ggagcccctg
     3481 ttcacctctg ggggacagag gaggttgctg cctggctgga gcacctcagt ctctgtgagt
     3541 ataaggacat cttcacgcgg cacgacatcc ggggctccga gctcctgcac ctggagcgga
     3601 gggacctcaa ggaccttggt gtgaccaaag tgggccatat gaagaggatc ctctgtggga
     3661 tcaaggaact gagccggagc tcccctgccg ccgaggccta gcctctgcat tctctgcctg
     3721 catcctccgc tcctcccgag actgaggccc agggaggaag gacactgcca gcactcagcc
     3781 cctggccttt ctcatggtgc tattcctttt gttagtgaca ggaagtctga cgcccgttgg
     3841 taacagcttt ggagtcttga acataccaac acagctacct ttgagaatac ttttcctagc
     3901 tgcagtcatt tggggcagac tgtgtcaggt ccacttgtgg ctcttgctaa cctgcctgtg
     3961 ggccacagag aatgtggtga atgaagcctg accaccccag cacatggcat tcctgcagaa
     4021 ccttcttacc tgtggcacat gcttggagtg tgctgtgcac tctccttttc tgtgtccttt
     4081 actgggtagt aacatcttct gcctctattg gctctcagaa gcagagttgg gtctggcctc
     4141 agtggccctc accagaatgt tctctgtgcc tgctactcac tctgtggttc ttttacagca
     4201 gccttgcaaa ggccgcccac tgctgttgcc cctttgttca caaggtttca ttgttttaaa
     4261 aaacaagctt atttactttc ctggtttgaa agtggcatgg atctatctcc aggcttctta
     4321 tagtctgtga ggaagaagga aaaccctcct gcttaggcca ggcctcagga cacttggttc
     4381 tcccctctct tgtcctttgg gctatgagca tacggacagt ccatgtgtct cctcaggatg
     4441 ctacaggtgt ctgcagtccg gtctgggcag acaaggatgt gggtttacac tagttcagca
     4501 tccctgtgga gcccaggctt cccgggtgct gggaaggaca tatgccatgg gagaatgaat
     4561 agtcagtagg ggcagtctgg gccatctcag gtggcttctc atttgctgtg agattgtccc
     4621 aggaagtgtc tgtgaggtct ctgaactggc tctgagacag caggtggtac tgttgggggc
     4681 agaagctctc caaagctcag actacatcct gtgggcagtt cccaggtggg gatgttcccc
     4741 tggccttcac caccactgac ttaccccttt ctccactttc agagacagca gtcctccaca
     4801 gggacttgta gaacagctag aaagggctgt agttcagccc tggctgtggt cctcagcaga
     4861 gatgacagtt ctgtgaactc tgccagtgct tccccatctg acatggaaaa gtgctggact
     4921 tgggtagggt ctccatctgg gaggcaaggt tgctctgctg tttgtgctgc agactagact
     4981 ccttgctcat cttcccttta ctggtggcag atctgagagc cctggtcagc agagtggagt
     5041 atggagacgg cctacattgt tgttcctgct gcattctgcc ccagacctag agttccatcc
     5101 attgtagatc agatgtgggc tgggacattg ctgcctccat gaaagcaacc ctggatggaa
     5161 atagttgtca cttttccacc tggggctgtt tcccaccgag cagtcaatgt agactagaat
     5221 gtggaagcag ggagaacctt ggataattca cagagcctgt gccagccaga ccacctgaaa
     5281 cctaggggtc atgaggagaa acaactgagg ccagtggcct tgagaaagct tcatgtttgg
     5341 atgacagcat tagaattcac tgttgtcaac aaaaagtgag aggtccaggc tgagtgttgg
     5401 agggacctgc caggtggcca tggctcttca cagatgtatt ctgggtattc tggccatcac
     5461 tacctgaccc caaccccacg gcagttcttt agagctgtgg agagggaggg agaatatgaa
     5521 ggatcccaaa ggattggagt gaaggttttg tgcctgcagg tggggctaac ctaaccctta
     5581 tatttataat cttaatttat agtgatcatc tggagcagat gcctcttgta ttgttatgta
     5641 catagtctgc atcagagagt tgtaaataag ttcttctgtg tataataaaa caagcctgtt
     5701 tctgatcttc cagtca
//
