LOCUS       XM_039090530            8570 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus desumoylating isopeptidase 2 (Desi2),
            transcript variant X5, mRNA.
ACCESSION   XM_039090530
VERSION     XM_039090530.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090530.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8570
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8570
                     /gene="Desi2"
                     /gene_synonym="CGI-146; DeSI-2; Fam152a; PNAS-4; Pppde1"
                     /note="desumoylating isopeptidase 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 52
                     ESTs, 7 long SRA reads, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 68 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:289277"
                     /db_xref="RGD:1359392"
     CDS             570..1043
                     /gene="Desi2"
                     /gene_synonym="CGI-146; DeSI-2; Fam152a; PNAS-4; Pppde1"
                     /codon_start=1
                     /product="deubiquitinase DESI2 isoform X4"
                     /protein_id="XP_038946458.1"
                     /db_xref="GeneID:289277"
                     /db_xref="RGD:1359392"
                     /translation="MGANQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGRGSTDFL
                     EDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIP
                     FLQSCLPKEWLTPAALQSSVSQELQDELEEAEDAAASTAMASAAAGGRTGRHTKL"
ORIGIN      
        1 catcctggga actgaagtct ccctgggaga cgtgaagggc aacaatatcc tggcgcatgc
       61 tgggatatgt agtcagactg ttcatacgcc caatagaaat cggggaatcc agcactgcat
      121 tctgggaatc gtagtctttc tgcgacctcg aaccaccagg gtgaagaggc acccaacccg
      181 ccgccatttt aggtctcgag gtgcagcgcc tgagagagtc agcgcgcagg cgggctcagc
      241 cctggctccg agcgggcccc gcctccaggg tgcctggagc ccgcccctcg cccaggctcc
      301 gccttccccc acgtgtctgc ggccgagggg aggcgcctga gccggagcgg gctctccacc
      361 ggtctggccc ggtcctcata caggtttctg acagcggctc ccgggagcgg ccccggctgc
      421 cggatgcttc cgccccgact gcggcgggcc gggctggacg cttagtgccc ggctcgagcc
      481 ctgcctgagg ctcccgcggg ggtggcagcg gcctccgccc cgcggagacc gagcggctgg
      541 aggacgaggc ggcggtcgtg gggaggagga tgggggctaa ccagttagtg gtgctcaacg
      601 tctacgacat gtactggatg aatgaataca cctcatctat cggaattgga gtttttcatt
      661 ctggaattga agtatatggc agagggagta cggacttcct ggaagatgac atagaaaaga
      721 ttgtggaaga gctggggaaa gagtacaaag gcaacgccta ccatctgatg cacaagaact
      781 gcaaccactt ctcctccgcc ctgtcagaga ttctctgtgg gaaagagatt cctcgctgga
      841 tcaaccggct ggcctacttc agctcctgta taccctttct acagagttgc ctcccaaagg
      901 agtggctcac tcctgcggca ctgcagtcta gtgtcagcca agaactccag gatgaactgg
      961 aagaagcaga ggacgcagcc gcatccactg ccatggcaag tgctgcagct ggaggcagaa
     1021 ctgggcgtca cactaaacta taattatgat ctctgccgtc tgccttcaga acggtctctg
     1081 gcagttgagt gtcactagag aaaaagaaaa tagagtaaat gtcctttgga tattttgtat
     1141 gcaaagatgg ctctccccca aatcccagtt tttcagctca ggattatatt tgtaatcaaa
     1201 aacaaaaaag aaaaaaaatc actcggcaca ggagggagaa cttcgtacga agctgccctc
     1261 ttctcttttc tttttaaccc acttgtaaat ttggattcac ttcctctgtt ttatacgagc
     1321 tctgttaaat tacgtttaca gtattttgta ccactgttta caaatcttgc atggacttct
     1381 gccaccgtga aggaagagta tcctcctctt cagacgtgag gcagaccatc tctgtacact
     1441 tcctgacagc tgcagagcca cggcctaata gtgggcacaa gagaaggctc tcacgactgc
     1501 aggtctcatc acctgctcac aggctgtccc ttagagtccc atttggcacc cagacacagg
     1561 agtgccagct ggcctcatgt gaaggagcac acatggccag agggctcctt gggccccagg
     1621 tcagctcctt tccacacctc cttcctgttc cgagcagcac attccccaag gtgcccatgg
     1681 agcaactggt ttcatcccaa acacacctgc tcagcagggg gggggtgtcg tgtctgccgg
     1741 ctagatgcct ctgacccttt aatgaagatg tgttcatgga agacactctt ataacgatga
     1801 gtggtttgca catgtcttac agaggggcct catttttact ttagtacatt ctaaactcct
     1861 ccctgtacag gatatttttg gtgggctggg agtatcctaa cctagcttcc tgagcagcag
     1921 tctaaactga cattaaactg ctttttaact agccagacta ccttttatac tggacattga
     1981 aaactagaat ctgaaacaca cctaacattt aatacttgtg tacaccatat cagaaatggc
     2041 ttgttggagt tttagttcat gggggagtgg ttgcacctca taatagagat tctattttca
     2101 ttgataactt gttaaaaatc atatttttgt gtcttaaatt catcttttta tgttctcaat
     2161 gtacatctct tacataacat acccttagga ggaagttgtg ctacagataa gtctttagca
     2221 aggaagtcat ctgttagagt ccaaccccca gtgagccttg gatgtagaac caatcattac
     2281 gtcacaatca atgttctgcc ttaagagtga gtgtgtaagt ggatgcaaca taggaacatc
     2341 ccaggtactg actgcagctt ccgatgcaag gttagtgtgg gagccacagt ctgtgtgagg
     2401 acgatacatg tctttgagta aatgacatct ttaactttgc catgagctga ttttgattga
     2461 tacttattaa cgtaagcaca ctctctttat agggaaagta aaccttgggt tatttgacac
     2521 tttgtgctgt ttgactgttc cgttccagag aagaaagttg ctgcaggtta ctctgccagg
     2581 gggcgggggg ggggtgcatt tgttttagga aacgtgcagc aagacaggat tgtgggattg
     2641 tggtctttat gaagagttga cgtagttcag ttctgaaaag aagactgagg acaagacact
     2701 aatgctccca agaggtgttc actacaaaag cccaagccct cagcccagct tagtaggagt
     2761 tgacttgggg ttttctgttt gtttgtttta ttaatcgtgt ggatcatggt gtttctatga
     2821 gatataaaaa tgttttgacc caagggaatg gcccctcagt tagacatttc tcggtaaata
     2881 gccaggaaca tctctctgct cacccatagt tcagcagctc agcacacaca cgagtgactt
     2941 gctgttctca cacctgactg tgatatttgc aatttgaagt agtgtaaaag tcttgtagga
     3001 gataaacagc gtgtgtgcag gtcacctgag agtcaggaca cacgattctt tgcactttag
     3061 tgtacctgag gttaagagga agagaatctc atttagtgaa accttctcta cagtgcaaat
     3121 taagaatggg ttaattaact ttgcttgtct tgccctcaga agaaacaatc ttgttctcag
     3181 catgaactcc taagaaaacc cctaagtcag aacccgagtc atgaattcac atgtgatccc
     3241 gggagtcaga tacagctttt gtagttgcaa ccaagtgaac tgtttctcct ggtaggtgtt
     3301 caaacagtaa tagcagtgaa agatcaggta gctgggttct ggtgcttgtt ttaaatacgc
     3361 ttgggctttt aaatcctcac tgggggcatt ggctttagat tgtggcttat ggggctgtgg
     3421 aaggcggtga ttgtcctcga ggcctgacct ccagccaact cttgctctga ctcacagcaa
     3481 tagcatagct acccatcacc agcatcttac agagcaggga accccaggtt tagtccatcg
     3541 atagatagcc tggtgcgtct gtgtgcgtgt gtgcatgtgc gtgtgtgtgt gtgtgtgtgt
     3601 gtgtgtgtgt gtgtgtgtgt gtgtgtggtc aggcaccgca gacagcagca ggactctttc
     3661 ccatggcttc ttccatcaga agacgggtag aaacacgttc actgcttctc agctctaacc
     3721 attgtgtcgt cctgtggctc cattatgtct ttactgcagc tttggtgtat gctgttttcc
     3781 ttaaatgact aattttaaaa gttagttttt tcagcagtgg ccatcccatt tgggccagta
     3841 tggtttgaaa gtgttgcttg gttgttagac tttcgttgtc tgcttggtct gttcacacac
     3901 atctccgctg tcaacaagtg ggacggctgt caacaaatct tcatggacct gaagagaatt
     3961 tctgtgagga tgactgcaag tgtactgtca ctcacagtgt ctctaaaaca ccaagagctc
     4021 tccctccctt ttgctacctt gatatagcat tgggttatca tgtcacaaca ttggaataca
     4081 tcgatttatt aaaaactact tttataagaa atgtttatag ttctttgtga cctctaagag
     4141 acaccactgt tctgtatttg tgctgggaag gggttatttg tacaatccaa gaattccatc
     4201 tgctctgcgg gagtgggcca ggttcctctg tcacgccttg tatccacagc ttcccttgct
     4261 caaacagtaa ggactcttgg gctccgtccc tgggccaaca cattggccat cagagagcgc
     4321 acaggcagca agtggcagcc cagatttctg gggaatggag gcagagtgct gactggaaga
     4381 ctctccccac ctttcagcat taagtgggag cctgagtgct gatgctcact tcctgttagc
     4441 ctctgctgtg tggcacttcc tgttagcctc tgctgtgtgg tacttactgt tagcctctgc
     4501 tgtttagcac ctcaaacctg aaactttgcc tctcacctcc attggccctt tgtacctagc
     4561 tcagtattta cctccactaa tttaagtttt tccctaaaat tgttaacaag taaatgaata
     4621 gtaatttaat gatccaacaa gggttgtcca ctcttcgcca aataagagtg atctactgta
     4681 accaggctgt tctcacctca gggacatccg tgggtctctt aacaccgtaa tctcctaata
     4741 gactcagatc tgctaaaaac aacctaaggg tcttccctat aaagagagtg ccagtaatac
     4801 tggagacagt tttttttaat tgtccctgtt tgcccatgtt taggccttgc tctgacttca
     4861 ggagtctgcg ctaaggatga ttaatgactt cttatgctct ctaagagata atttagtagc
     4921 aaatagcttt tcttcatatt gaaacaaaac agaacactaa agaaatcttc actggcttgg
     4981 ttattttcag agaccagata agcctcgatg tgctctgaag atctgccctg gctggcaaga
     5041 atttcacaat cccacttggg agtgactccg tcccgtgctc tgaggcaagg aatagttagg
     5101 gctgccatct ccaagccttc tctggccttc acactgggaa gcactcactc tgatccacag
     5161 ggggcctcca attggaggaa gacattgtct gtctccttgt tttctctcat ctcccaaact
     5221 caggcaggca gtgggattta tcatcaggac agcctacatt gcttctgaag ccctcaacct
     5281 atctcaggct acctttaggc cctatgtgag ccagagggct taggtatggt tgcccaggtt
     5341 gctaagccag actcctcaag gcagcttgac tgtcctgaat acacatgtgg tgtaaattaa
     5401 ggaaggcagc tggaactgga gtggcggtct ggctcttagg aacactggct gttcttcaga
     5461 ggacctaggt tcctgtaatt ccagatctgg gggatctgat ggcctcttct ggcctctctg
     5521 gcctcatatt atacacagag acatgcaggc aaaacactca ttaaaaaaaa attaaggcat
     5581 tttggtgtac ctgggggtgc tcagtctagg tgactactta ccctcaaacc tgggctggaa
     5641 ctttccaatg gcaaagctgg aatatgctct aagggagcag aagctgccag agttggccat
     5701 caggaaaggt acaaaatgca tgccttcctc ttctgtcagc atctgtaaac agacaccaca
     5761 ggagtaccct agtgtggcct ccaacttgtt taaaaagaaa aaacaaaaac ctaccttata
     5821 ttgaggacaa tgaaaaaggg aagtcctttt gttctacctc tgccctgagt cggggctgcc
     5881 gtgggtcacg taaatacatt tcatttatca cgacatcctg tgcttcacaa agacagtgga
     5941 gaggtcattc agcctaagat cacacagatt tcctggataa agtgaatggt gggaaaggct
     6001 gatgctatgt gtgttggcgt taagttcctg tccacagtct ggagaggtga acctctgaag
     6061 ggcttagtca tgggtccccc tcagaatcag tagaggtgga gggaggattt tccaagtttt
     6121 taatgagttt gagtcaaccc tacaaactat tcaaggagga accacaaagt aaaacatgga
     6181 ctcaaggact tcagagactt acctagatgc ctctaaacac cgggctgaag ccaggctgtt
     6241 ctgtcctaga accaccttga gctgtcagga acaagtccat caaccaacca ttcatggcga
     6301 agacccaaac tgcccaaact gccatcccca gggaccttgc acatagcctc gtgtgttact
     6361 gttcaccatt actgtccctt ctgacacttc caacatgaca gacaaaaatg ctttagtggg
     6421 tgacactttt ttttttaaga tttatttgtt ttatgtaaat gaagagagca ccagatccca
     6481 ttagagatga ttgtgagcca ccatgtggtt gctgggaatt gaactcagga cctctggaag
     6541 agcagctagt gctcttaacc actgagccat ctccctagcc cgggtgacac ttttcaagaa
     6601 gtacctctca gccacacctt gtgtcttgag aagccctctg gacctctgtt ctctatttcc
     6661 attgttgttt ctgacatttc tccactacag aaccttcagc cctgccaggt gccacctgct
     6721 acttcacact cttctgctca ctgtcttcct ccacagctgt ttcctgtcct cattcccagt
     6781 gaccacatcc acacagatgg caagtgctat ttgcctctgt catcttgtca ccttgccctc
     6841 tagctgccag cacctcccac tcctcaatcg tcatgtccat agttattcta tccacacaca
     6901 tttcaccatc attccccagt cgataacatc caccactgtc ccagtcttag acctgagacc
     6961 tattataggg atgttctaga ccacttctaa aattgttatt tcaagacagg gtttctcagt
     7021 gtaaccttag ctgttctgga actccctttg ttgacgagcc tggccttgaa ctcagagatc
     7081 catctgctct gcctcccaag tgctgggatt aaaggcatac atcaccatgc ttggccagtt
     7141 ctggaatctt cattccaagc atttctggcc attaccttta ggtttacccc aatccacttc
     7201 tctataagga atcattggcc tttgcaggat cccaaagcca ttaaatcttg tacttaaaaa
     7261 tgtctcctct ctaacccacc tatctctcct ctcactcaaa ccaaatctga ttgccagcaa
     7321 ctaagtcatt tcctcctctg gtccctccac cacttacttc aatgtccctt tattaaaatt
     7381 ttctggcaag ctaacctgat tgggatgtag actatatcag agtctggctg ctgatgctgc
     7441 atgtgttagc ttgactttgt ttctgtacat aaagcagtga gtggtcactc acactgcacc
     7501 atggtctact cttggtccct tggaagtcag cttcccacat atatctcagt tgagaccctc
     7561 acttgacgcc tcagtaaaag atgttaggtc acttggcctc tggtctccta atctaaagtc
     7621 tgtatccaga gacactgtgc taccataggg ggtgcttgct acttttgtaa aacacccctc
     7681 cctcacctct ccaggctgta cctctaacaa ttattccctg ttcctcaaca gcgcatttcc
     7741 tctctcctgt cagcagctat tatgttccct ggagacctgc tatgacaaaa tggatcctct
     7801 ccatctccac aatcagaatt ttccaactcc atgtcccatt cactattttg aaaatcactt
     7861 tgattttgag tgacggatac aatagagttt agggcttcga gtgtagttcc cagggtaaca
     7921 agtggtagtg cccttgacga gtgtatgcaa ggccccagag ttcatcccag cactgtttga
     7981 aaagtaaggg cgtggagaaa ggctgtatat aatgtatgtg aaccatttaa aggacgatgg
     8041 aatgaacagc atcctgtacc caccactcag cttagataac agacctggag aacatgtcta
     8101 ggcccctccc ccattactac tcttccttcc accagaagag gaaccaacat cctgaagttt
     8161 gtgtacattg tccctttggt cttctttttc ttgatggttt tatctcctgc atatgcctat
     8221 ttttgagctt tgtataaatt taactcatat ataccatggt ttttaaagtc tctattttta
     8281 taattcatgc atatttaata tgtatagttc tatctctttc cactactgta ttctactgta
     8341 ttctacaagc acaccatgat tctgtttata cattttccct ttggcggaca tttgaacagt
     8401 tgcagctttc tcactgataa gcaatacttt gtgaatgctg taaggtgtgt atgtgctgtg
     8461 aggatctctc taggaactgc taggaatgtg tgtgttcaaa cttatcgatg tcaaagaaca
     8521 atagagtctt tattacacct ttattaaata aaatcctgtt cagccctctc
//
