LOCUS       NM_001399006            1731 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus deoxyribose-phosphate aldolase (Dera), mRNA.
ACCESSION   NM_001399006 XM_003749862
VERSION     NM_001399006.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1731)
  AUTHORS   Sgarrella,F., Poddie,F.P., Meloni,M.A., Sciola,L., Pippia,P. and
            Tozzi,M.G.
  TITLE     Channelling of deoxyribose moiety of exogenous DNA into
            carbohydrate metabolism: role of deoxyriboaldolase
  JOURNAL   Comp Biochem Physiol B Biochem Mol Biol 117 (2), 253-257 (1997)
   PUBMED   9226884
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Dec 29, 2021 this sequence version replaced XM_003749862.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582419.1161146.1,
                                           SRR22582419.497067.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-105               JAXUCZ010000004.1  172394971-172395075
            106-203             JAXUCZ010000004.1  172416780-172416877
            204-351             JAXUCZ010000004.1  172418179-172418326
            352-447             JAXUCZ010000004.1  172419404-172419499
            448-582             JAXUCZ010000004.1  172421862-172421996
            583-711             JAXUCZ010000004.1  172434473-172434601
            712-824             JAXUCZ010000004.1  172468861-172468973
            825-974             JAXUCZ010000004.1  172472615-172472764
            975-1731            JAXUCZ010000004.1  172472990-172473746
FEATURES             Location/Qualifiers
     source          1..1731
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q44"
     gene            1..1731
                     /gene="Dera"
                     /gene_synonym="Dera-ps1"
                     /note="deoxyribose-phosphate aldolase"
                     /db_xref="GeneID:690945"
                     /db_xref="RGD:1589836"
     exon            1..105
                     /gene="Dera"
                     /gene_synonym="Dera-ps1"
                     /inference="alignment:Splign:2.1.0"
     CDS             75..1031
                     /gene="Dera"
                     /gene_synonym="Dera-ps1"
                     /EC_number="4.1.2.4"
                     /note="2-deoxyribose-5-phosphate aldolase homolog,
                     pseudogene 1; deoxyribose-phosphate aldolase, pseudogene
                     1; deoxyribose-phosphate aldolase (putative)"
                     /codon_start=1
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="NP_001385935.1"
                     /db_xref="GeneID:690945"
                     /db_xref="RGD:1589836"
                     /translation="MAAHCRGTELDLSWVSRVQVNHAAVLRRAEQIQARRSVKKEWQA
                     AWLLKAVTFIDLTTLSGDDTFSNVQRLCYKAKYPIRADLLKALNMHDEGITTAAVCVY
                     PARVCDAVKALKAAGCRIPVASVATGFPAGQTHLKTRLEEVRLAVEDGATEIDVVINR
                     TLVLTGQWEALYDEITQFRKACGEAHLKTILATGELGSLTNIYKASLVAMMAGSDFIK
                     TSTGKETVNATFPVAIVMLRAIRDFFWKTGNKVGFKPAGGIRTAKESLVWLSLVKEEL
                     GDEWLTPDLFRIGASSLLSDIERQIYHHVTGRYAAYHDLPMS"
     exon            106..203
                     /gene="Dera"
                     /gene_synonym="Dera-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            204..351
                     /gene="Dera"
                     /gene_synonym="Dera-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            352..447
                     /gene="Dera"
                     /gene_synonym="Dera-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            448..582
                     /gene="Dera"
                     /gene_synonym="Dera-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            583..711
                     /gene="Dera"
                     /gene_synonym="Dera-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            712..824
                     /gene="Dera"
                     /gene_synonym="Dera-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            825..974
                     /gene="Dera"
                     /gene_synonym="Dera-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            975..1731
                     /gene="Dera"
                     /gene_synonym="Dera-ps1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcaggaagg aggaagacca ggcctgtgtg gcgccctacc ctggtgcaag agttaccttt
       61 cagctgtggc cgcaatggct gctcactgcc ggggcacaga gctcgatctc agctgggtct
      121 ccagagttca agtgaaccat gcggctgtgc tgaggcgggc cgagcagatc caggcccgcc
      181 gaagtgtgaa gaaggaatgg caggctgcgt ggctcctgaa agctgtcacg ttcatagacc
      241 tcaccacgct ttctggtgat gacacgtttt ccaacgttca acggctctgt tataaagcca
      301 aatatccaat ccgggcagac ctcttaaaag ccttaaatat gcatgacgaa ggtatcacca
      361 cggctgcggt ctgtgtttac cctgcccggg tctgcgatgc tgtgaaggca ctgaaggccg
      421 caggctgcag gatccctgtg gcatcagtgg ccactggctt tccagctgga cagactcatt
      481 taaagactcg attggaagag gtcagactgg cagtggagga cggagctact gaaatcgacg
      541 tggtcattaa caggaccttg gtgctgactg gccagtggga agctctctac gatgagatca
      601 ctcagtttcg aaaggcctgt ggggaggccc atctcaaaac catcttggct acgggagagc
      661 tcggctctct caccaacatc tacaaagcca gcctggtagc aatgatggcg ggatcagatt
      721 ttattaagac ctctactgga aaagaaacag taaacgccac cttcccggta gccatcgtga
      781 tgctgcgggc cattagagat ttcttctgga aaactggaaa caaggtaggc tttaagcctg
      841 caggaggcat ccgtacagcg aaggaatccc ttgtgtggct ctctctggta aaggaggaac
      901 tgggggatga gtggctgact cccgacctct tccggatagg ggccagctct ctgctctccg
      961 acatcgagag acagatttac catcacgtga ctggacgata tgcggcttat cacgatcttc
     1021 caatgtctta ggtcagcagc cagcccagaa aagcatcttg caacaaattt ttttttaaaa
     1081 aatgtttttg cataattgct aaggttatgt aattacagag ccattaactg actccccccc
     1141 cactaaaatc ccccctgaaa tcaactcaga acaatagagg aaacaaacca gtcgaatcta
     1201 aatgtggaac tcaaatcaag aaaggttgaa atggtcttca ttaccaagat gtctgcattt
     1261 attaattttg tgaagatttt ctctgaaaaa ctcaggaaaa aatgtttcta ctaacccgta
     1321 ctgcagaaaa ttctgaaggg aaaatggagt taaattgcct gagacctgag attccagggc
     1381 aggcggggcc tggagggaag ggtgcttgtt accagacctg acaccctgtt ccgctctcag
     1441 taactacagg gtggacgggg agaacggaca ccaaagattg tcctcgatga tcacatagcc
     1501 atgtccccta tctctgacgc ataataaata aattaaaaat gggatcaaaa ttaaaatggg
     1561 tgctacagca aagggacact ctgcctccct gtgctgcctc ccattggagc cctgccctgg
     1621 catccacctg accttctgtg ctgtacagaa cactctcatt aattgtttgc taacgagatt
     1681 atgatgttgt tgcaagaaaa tgtgaataac actgaatttt aaatacaaaa a
//
