LOCUS       NM_001029916            1732 bp    mRNA    linear   ROD 03-MAY-2024
DEFINITION  Rattus norvegicus DEP domain containing 7 (Depdc7), transcript
            variant 1, mRNA.
ACCESSION   NM_001029916 XM_215795
VERSION     NM_001029916.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC097357.1.
            
            On Jul 29, 2005 this sequence version replaced XM_215795.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097357.1, SRR8487230.4439.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760494 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q32"
     gene            1..1732
                     /gene="Depdc7"
                     /gene_synonym="RGD1309720"
                     /note="DEP domain containing 7"
                     /db_xref="GeneID:295971"
                     /db_xref="RGD:1309720"
     exon            1..122
                     /gene="Depdc7"
                     /gene_synonym="RGD1309720"
                     /inference="alignment:Splign:2.1.0"
     CDS             50..1585
                     /gene="Depdc7"
                     /gene_synonym="RGD1309720"
                     /note="isoform 1 is encoded by transcript variant 1; DEP
                     domain-containing protein 7"
                     /codon_start=1
                     /product="DEP domain-containing protein 7 isoform 1"
                     /protein_id="NP_001025087.1"
                     /db_xref="GeneID:295971"
                     /db_xref="RGD:1309720"
                     /translation="MATVREKAAALDLSALHSPAQRPPGFSVAQKPFGATYVWSSIIN
                     TLQTQVEVKKRRHHLKRHNDCFVGSEAVDVIYSHLTQNKFFGDVDIPRAKVVRVCQAL
                     MDYKVFEAVQTRVFGKDKKPAFEDSSCSLYRFTTIPNQDSQLGHENKGTSPSRFSDAL
                     FKSSDIKSDSLEDLWENLSLKPTNSPHVSTRLSPQVINEVWQEETIGRLLQLVDLPFL
                     DSLLKQQEVVPKAPQSKRQPDMVNTSNYLDRGILRAYGDSQEDEWISAAIDCLEYLPD
                     QMVVDISRNFPEQPDRTDLVKELLFGAIGKYYSTREPLLNHLSDVHNGIAELLVNGKT
                     EIALEATQLFLKLLDSQNREEFRRLLYFMAVAADPSEFKLQEESDNRMVVKRVFSKAI
                     VNNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKIVSVKLLAIQKGRDPNKDTGYIYC
                     QRIDGREYSSSIQKKTKDQLLSLLKTIDEDSKLSAKEKKKLLGQFHKSHPDIFIEYFG
                     DSF"
     exon            123..513
                     /gene="Depdc7"
                     /gene_synonym="RGD1309720"
                     /inference="alignment:Splign:2.1.0"
     exon            514..635
                     /gene="Depdc7"
                     /gene_synonym="RGD1309720"
                     /inference="alignment:Splign:2.1.0"
     exon            636..825
                     /gene="Depdc7"
                     /gene_synonym="RGD1309720"
                     /inference="alignment:Splign:2.1.0"
     exon            826..1037
                     /gene="Depdc7"
                     /gene_synonym="RGD1309720"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1180
                     /gene="Depdc7"
                     /gene_synonym="RGD1309720"
                     /inference="alignment:Splign:2.1.0"
     exon            1181..1306
                     /gene="Depdc7"
                     /gene_synonym="RGD1309720"
                     /inference="alignment:Splign:2.1.0"
     exon            1307..1385
                     /gene="Depdc7"
                     /gene_synonym="RGD1309720"
                     /inference="alignment:Splign:2.1.0"
     exon            1386..1709
                     /gene="Depdc7"
                     /gene_synonym="RGD1309720"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagcgacggc agcggcgccg tggaggaccg ggtctagccc gctgctgtca tggccacagt
       61 tcgggagaag gcagcggcgc tggacctgtc agctctgcac agccccgcac agaggcctcc
      121 gggcttcagt gtggcccaga agccctttgg agccacgtac gtgtggagca gcattataaa
      181 tacccttcaa acccaggtgg aagtgaagaa acggaggcac cacttaaaac ggcacaatga
      241 ctgtttcgtt ggctcggaag ctgtggacgt catttactca cacttaactc agaataaatt
      301 ctttggtgat gtcgatattc ctcgggccaa agtggtgaga gtgtgtcaag cacttatgga
      361 ctacaaagta tttgaggctg ttcaaaccag agtctttgga aaagacaaaa agcctgcatt
      421 tgaagacagc agttgcagcc tttatagatt cacaacaata cctaatcagg acagtcaatt
      481 aggccacgag aacaaaggga cctcaccttc caggttctca gatgccttgt ttaagtcatc
      541 tgatatcaag tcggacagtt tggaggacct gtgggaaaac ctgagtctaa agcctaccaa
      601 ctcccctcac gtctctacca ggctgtctcc tcaagttatc aatgaagtat ggcaagagga
      661 gacgattgga cggctgctac aacttgtcga ccttccattt cttgactcct tactcaaaca
      721 gcaagaggtt gtacctaaag cccctcagtc taagagacag cccgacatgg tcaacaccag
      781 taactatctg gatcgaggaa ttctcagggc ctatggtgac tctcaggaag atgagtggat
      841 ctctgcggcc attgactgct tggagtatct tcctgaccag atggttgtgg acataagcag
      901 gaattttcct gagcaaccag acagaacaga cttggtgaag gaacttctgt ttggtgctat
      961 tggcaaatac tatagtacta gggagcccct gttaaaccac ctgtctgatg ttcacaatgg
     1021 aatagcagag ctcctggtaa atgggaagac tgaaatagca ttagaagcta ctcagctgtt
     1081 cctgaagctt ctggattccc aaaataggga agaatttaga agactgcttt acttcatggc
     1141 tgttgcagca gatccttctg aatttaaatt acaggaagaa agtgacaatc ggatggtagt
     1201 gaaaagggta ttctcgaaag ctattgtcaa caataaaaac ttatccaaag gcaaaactga
     1261 tcttcttgtt ctcttcttaa tggatcacca aaaagatgtt ttcaagattc ctggaactct
     1321 acataaaatt gtcagtgtta agcttctggc tatacagaaa ggaagagatc ctaataagga
     1381 cacaggctac atttattgcc agaggattga tggacgtgag tattctagca gcatacagaa
     1441 gaaaaccaaa gaccaactac tgagcttact aaagactatt gacgaggatt caaaactctc
     1501 tgccaaagag aagaagaagc tgctaggcca attccataag agtcatccag acatcttcat
     1561 tgagtatttt ggagacagtt tctaatgtct acgtgtatgt gcacttgtat tttaagggca
     1621 aattatacag cctaaagaaa ttttaaactt ggatgtctaa atatgaagtt gtagttaata
     1681 aaaattttta tactcatctg tgtcaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//
