LOCUS       NM_001126289            2500 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus DENN domain containing 1C (Dennd1c), mRNA.
ACCESSION   NM_001126289 XM_039083935 XM_343664
VERSION     NM_001126289.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Klip,A., Sun,Y., Chiu,T.T. and Foley,K.P.
  TITLE     Signal transduction meets vesicle traffic: the software and
            hardware of GLUT4 translocation
  JOURNAL   Am J Physiol Cell Physiol 306 (10), C879-C886 (2014)
   PUBMED   24598362
  REMARK    Review article
REFERENCE   2  (bases 1 to 2500)
  AUTHORS   Yoshimura,S., Gerondopoulos,A., Linford,A., Rigden,D.J. and
            Barr,F.A.
  TITLE     Family-wide characterization of the DENN domain Rab GDP-GTP
            exchange factors
  JOURNAL   J Cell Biol 191 (2), 367-381 (2010)
   PUBMED   20937701
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On or before Feb 25, 2022 this sequence version replaced
            XM_039083935.1, NM_001126289.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.36357.1,
                                           SRR26643284.11995.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-106               JAXUCZ010000009.1  2003046-2003151     c
            107-171             JAXUCZ010000009.1  2001664-2001728     c
            172-215             JAXUCZ010000009.1  2001529-2001572     c
            216-265             JAXUCZ010000009.1  2001362-2001411     c
            266-385             JAXUCZ010000009.1  2000061-2000180     c
            386-455             JAXUCZ010000009.1  1999137-1999206     c
            456-536             JAXUCZ010000009.1  1998919-1998999     c
            537-602             JAXUCZ010000009.1  1998749-1998814     c
            603-656             JAXUCZ010000009.1  1998612-1998665     c
            657-767             JAXUCZ010000009.1  1998411-1998521     c
            768-868             JAXUCZ010000009.1  1996874-1996974     c
            869-914             JAXUCZ010000009.1  1996562-1996607     c
            915-1016            JAXUCZ010000009.1  1996345-1996446     c
            1017-1142           JAXUCZ010000009.1  1996136-1996261     c
            1143-1247           JAXUCZ010000009.1  1995636-1995740     c
            1248-1341           JAXUCZ010000009.1  1995302-1995395     c
            1342-1382           JAXUCZ010000009.1  1995181-1995221     c
            1383-1454           JAXUCZ010000009.1  1994891-1994962     c
            1455-1499           JAXUCZ010000009.1  1993160-1993204     c
            1500-1607           JAXUCZ010000009.1  1992964-1993071     c
            1608-1675           JAXUCZ010000009.1  1992032-1992099     c
            1676-1883           JAXUCZ010000009.1  1991740-1991947     c
            1884-2500           JAXUCZ010000009.1  1991039-1991655     c
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q11"
     gene            1..2500
                     /gene="Dennd1c"
                     /note="DENN domain containing 1C"
                     /db_xref="GeneID:363326"
                     /db_xref="RGD:1590869"
     exon            1..106
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     CDS             90..2450
                     /gene="Dennd1c"
                     /note="DENN/MADD domain containing 1C"
                     /codon_start=1
                     /product="DENN domain-containing protein 1C"
                     /protein_id="NP_001119761.2"
                     /db_xref="GeneID:363326"
                     /db_xref="RGD:1590869"
                     /translation="MGSTEIRHPSAVFDWFFEAGRPNSLEEDPLILRKFPPDFQEQEA
                     MQMVPRFCFPFDIEREPPSPAVQHFTFALTDLVGNRRFGFCRLRAGAWSCLCILSHLP
                     WFEVFYKILNTVGDLLAQNQVTEAEELLQNLQQHPYLGPGFSGGPKTDSSITSWSECG
                     ILPPALGNSKLLSCFVAPDAAGLPSIPENRNLTELVVAVTDENIVGLFAALLAERRVL
                     LTASKLSTLTACVHASCALLYPMRWEHVLIPTLPPHLLDYCCAPMPYLIGVHSSLAER
                     VREKALEDVVVLNADSNTLETPFDDVQALPPDVVSLLRLRLRKVALSPGEGVSRLFLK
                     AQALLFGGYRDALVCIPGQPVTFSEEAFLAQKPGAPLQAFHKKAVHLQLFKQFIESRL
                     EKLNAGEGFSDQFEQEIIACCGASSGTLRSYQLWADSLKKGSDALLHSVKAKTRPAVR
                     NMYRSAKSGLKGMQNLLMIKDGDSCLQRGGSLRTPSLTSRSDRLQQRLPISQHFGQNR
                     PLRPSRRLKPEGGPSEPLQERSPTLNSRDTQNPWAEDTLDGSFLGSGEELDLLSEILD
                     SLSVEIKSGGQLRASQSLDCCQQGASESCSSLPDIPVGSPWQLEEDRRSQDPQLQSLP
                     GDLSPLQDTPFSEVVSYSKNCPQPPSDISSLPTSSATSADPPSQRDPGPSSSSKLDPT
                     PSQSPCSRTLRVPTQPTPPKSQLLASTEPNSDTVQKLQPIQSPLCSQSKENPRNQPPQ
                     VLLSQACIQPLKELGAPTSYVSHVGKHQEPQDRQPRVADLKKCFEN"
     exon            107..171
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            172..215
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            216..265
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            266..385
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            386..455
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            456..536
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            537..602
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            603..656
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            657..767
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            768..868
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            869..914
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            915..1016
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            1017..1142
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            1143..1247
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            1248..1341
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            1342..1382
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            1383..1454
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            1455..1499
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            1500..1607
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            1608..1675
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            1676..1883
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
     exon            1884..2500
                     /gene="Dennd1c"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agatcagggg cccagctgca agcaaacaca ggctccccca gccccaggag ccctagggga
       61 agggcccagc tgggccagcc gtggagacca tgggatccac tgaaataagg catccctctg
      121 ctgtgtttga ctggttcttc gaagctggcc gccccaactc cctggaggag gatcccctga
      181 tcctgcggaa gttccctcca gacttccagg aacaggaggc catgcagatg gtgcccaggt
      241 tctgtttccc cttcgacata gaaagggagc cgcccagccc tgctgtccag cactttacct
      301 ttgccctcac tgacctggtg ggcaaccgta gatttggctt ctgccgcctg cgagccggtg
      361 catggagctg cctctgtata ctcagccacc ttccctggtt tgaagtgttc tacaagattc
      421 tcaatactgt gggggacctc ctagctcaga accaagtcac cgaggctgaa gaactcctac
      481 agaacttgca gcaacacccc tatcttggac ccggtttttc agggggacca aagacggaca
      541 gcagcatcac cagctggagc gagtgcggga tcttgcctcc tgccctgggt aatagcaagc
      601 tgctttcttg ttttgtggct ccggatgctg cgggcctccc atctattcct gagaatagga
      661 acctcactga gctggtggtc gctgtgacag atgaaaacat cgtggggctc ttcgcagcgc
      721 tgctagctga gaggagggtc ttgctcacgg ccagcaagct cagcactctg acagcctgcg
      781 ttcacgcctc ctgcgctctg ctctacccca tgcgctggga gcatgttttg atccccacgc
      841 tgcccccgca cctgctggat tactgctgtg cgcccatgcc ctacctcata ggagtccaca
      901 gcagtctcgc tgagagagtt cgggagaaag ccctggaaga cgttgtggtg ttgaatgcag
      961 actctaacac cctggagacg ccctttgacg atgtgcaagc tctgccgcca gatgtggtat
     1021 ccctgctgag gcttcggcta aggaaggttg cactgagccc cggggaaggg gtgtctcgtc
     1081 tcttcctcaa agcccaggcc ctgctctttg gagggtaccg tgacgccctg gtctgcatcc
     1141 cgggtcagcc agtgacattc agtgaggagg ctttcttggc tcagaagcct ggggcgcccc
     1201 tgcaggcctt ccacaaaaag gccgtacact tgcagctctt caaacagttc atcgaatccc
     1261 gactggaaaa actcaatgct ggagaaggtt tctcagacca atttgagcaa gagatcattg
     1321 cctgctgcgg agcttcctca ggcacccttc ggtcctatca gctctgggca gatagcctta
     1381 agaaaggtag tgatgccctc ctgcattctg tgaaagctaa aacccgacca gcggtcagga
     1441 acatgtaccg atcggcaaag agtggcttga agggtatgca gaacctgctt atgattaagg
     1501 acggagactc ttgccttcag agggggggct ccctgagaac cccaagcctc accagccgct
     1561 cagaccgact gcaacagcgc ctgcctatca gccagcactt cggacagaac aggcccctcc
     1621 gtcctagcag gagactcaag ccggaagggg gaccttctga acccctgcag gagaggagcc
     1681 ccaccttgaa ctccagggac actcagaatc cctgggcaga ggacactcta gacggcagct
     1741 tcctggggtc tggagaggag ctggatctgc tgagtgagat cctagacagt ctgagtgtgg
     1801 aaatcaagag tggcggccag ctgagggcca gccagagtct ggactgctgt cagcaagggg
     1861 cctcagagag ctgttccagc ctgcctgaca tcccagtagg gtcaccatgg caactggaag
     1921 aagacagaag atcccaggat cctcagcttc agtccctgcc tggtgaccta tcaccgctgc
     1981 aggacacccc attttcagag gttgtaagct actcaaagaa ctgtcctcag ccaccctcag
     2041 atatctcctc tctgcctaca tcttcagcca cttcagcaga ccctcccagc caaagggacc
     2101 cagggccctc ttcttccagc aagctggatc ctacaccctc acaaagccct tgctccagga
     2161 ccctcagagt ccccactcag cctactcccc caaaaagcca acttcttgcc tccacggagc
     2221 ccaactctga cactgtccag aagttacaac ccattcagtc tcccttgtgc tcccaatcta
     2281 aagagaaccc cagaaaccag cctccccagg ttctgctgag ccaggcttgt atacaacccc
     2341 tcaaggagct gggagccccc acttcttatg tctctcatgt aggcaagcac caagagcccc
     2401 aggacaggca acctcgagtt gctgatctga agaagtgttt tgaaaattaa aagggtgagg
     2461 ggttcccaag tctcaataaa gttgaatttg gtttccttga
//
