LOCUS       XM_039106590             540 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus defensin beta 28 (Defb28), mRNA.
ACCESSION   XM_039106590
VERSION     XM_039106590.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 14% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..540
                     /gene="Defb28"
                     /note="defensin beta 28; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 2 Proteins, and 65% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:641628"
                     /db_xref="RGD:1565792"
     CDS             1..540
                     /gene="Defb28"
                     /codon_start=1
                     /product="beta-defensin 115"
                     /protein_id="XP_038962518.1"
                     /db_xref="GeneID:641628"
                     /db_xref="RGD:1565792"
                     /translation="MLLTRSSTLSGHIKLWFLTLAVLVVLAQTSPEGWFRTCFYGMGK
                     CRHVCRANEKKKERCGENSFCCLGETKSKLSNIPTNKGRKKDGTYVSDVWLQSFMTSR
                     GHIQYCAGASEGSLISVHCKGVLTWVIECLTFRKDYTLRFTCLPTFIDMRRVQGKSGL
                     RSLPPNGGGLNYCAKIIPA"
ORIGIN      
        1 atgctgctga ctcgctcctc caccctctcg ggacacatta agctctggtt cctgacctta
       61 gctgtgcttg tggtcctggc tcagacttcc ccagaaggat ggttcagaac gtgcttttac
      121 ggcatgggaa aatgcaggca cgtatgcagg gccaatgaga agaagaaaga gaggtgtgga
      181 gagaactctt tttgctgtct cggagaaaca aagtcaaaac tgtccaacat cccaacgaac
      241 aaaggacgga aaaaggatgg tacgtatgtt tcagacgtct ggcttcagag cttcatgaca
      301 agtcggggac acatacagta ctgtgctgga gcttctgagg gttcattaat cagtgttcat
      361 tgtaaagggg tcttgacatg ggtcatcgag tgtcttactt ttcgtaagga ttatacactt
      421 aggttcacat gtctcccaac tttcatagac atgaggaggg tgcaggggaa atctggattg
      481 cgctctttgc ctcctaatgg tggaggtctc aactactgtg ccaagatcat acctgcctga
//
