LOCUS       XM_003748789            4933 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus death effector domain containing 2
            (Dedd2), transcript variant X1, mRNA.
ACCESSION   XM_003748789
VERSION     XM_003748789.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003748789.4.
            
            On Jan 21, 2021 this sequence version replaced XM_003748789.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4933
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4933
                     /gene="Dedd2"
                     /note="death effector domain containing 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 34 ESTs, 1 long SRA read, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 229 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:687118"
                     /db_xref="RGD:1588968"
     CDS             319..1314
                     /gene="Dedd2"
                     /codon_start=1
                     /product="DNA-binding death effector domain-containing
                     protein 2"
                     /protein_id="XP_003748837.1"
                     /db_xref="GeneID:687118"
                     /db_xref="RGD:1588968"
                     /translation="MALSGSTPAPSWEEDECLDYYGMLSLHRMFEVVGGQLTECELEL
                     LAFLLDEAPGAPGGLARARSGLELLLELERRGQCDESNLRLLSQLLRVLARHDLLPHL
                     ARKRRRPVSPERYSYGNSSSSSKRTEDSGRCRRRASSSSHSPQSQWDTGSPPTKRQRR
                     SQGRPSSGARQRRRAGLAASQQQQQQQQEPGRSSSEGKVTCDIRLRVRAEYCEHGPAL
                     EQGVASRRPQALARQLDVFGQATAVLRSRDLGSVVCDIKFSELSYLDAFWGDYLSGAL
                     LQALRGVFLTEALREAVGREAVRLLVSVDEADYEAGRRRLLLMEEEEGRRGTEAS"
ORIGIN      
        1 catcaagagc aagacacagc gagaacttgc ccctgcgcaa gcgcagcacg ggcgcgtcct
       61 gacgcttagg ttaggggcgg atcaggagtc ctgaaagggg tggggctttg gcggtctcat
      121 tctgcgcttg cgcagtaggg gcgtggcggt cgcacctgcg cgagttgggc gaaagaggag
      181 gagcgaggtg acgcaggcgt aataatagag aaggtgccag aaagatccaa aacaagtggc
      241 tgcggccgtc gcccagaagt catcggacgc tggaatctgg ccctggttct gagcttgttc
      301 cgcacccctc ccctgggaat ggcgttgtcc gggtcgaccc cggccccgag ctgggaggag
      361 gatgagtgtt tggattacta cggcatgctg tcgcttcacc gtatgttcga ggtagtgggc
      421 gggcagctga ccgagtgcga actggagctc ctggccttcc tgctggatga ggcccccggc
      481 gcccccggcg gcctggcccg cgcccgcagc ggcctggagc tgcttctgga gctggaacgc
      541 cgcgggcagt gcgacgagag caacctgcgg ctgctgagcc aacttctgcg cgtgctagcc
      601 cgtcacgacc tactgccaca tctggctcgc aagcggcgcc ggccagtgtc ccctgagcga
      661 tacagctatg gcaattccag ctcgtcttcc aagaggacag aggacagtgg ccggtgtcgg
      721 cgacgggcga gcagttcttc ccattctcct cagagtcagt gggacacagg ctccccacca
      781 accaagcggc agcgtcggag tcagggccgc cctagcagtg gtgccaggca gcggcggaga
      841 gcgggcctgg cagcctcgca gcagcagcaa cagcagcaac aggagccggg caggtcgtcc
      901 tcagaaggca aggtgacctg tgacatccgg ctccgggttc gggcagagta ctgcgagcat
      961 ggaccagcct tggagcaggg cgtggcatcc cggagacctc aggcattggc ccggcagctg
     1021 gatgtgtttg gacaggccac tgctgtgctg cggtcaagag acctgggctc tgtggtgtgt
     1081 gacatcaaat tttcagagct ctcctatctg gacgccttct ggggtgacta tctgagcggt
     1141 gccctgctgc aggctcttcg gggcgtgttc ctgactgagg ccttgcggga ggctgtaggc
     1201 cgagaggctg tccgcttgct ggtcagtgtg gacgaggctg actatgaggc tggccggcgc
     1261 cgcctgttgc tgatggagga ggaagagggg cggcgtggga cagaggcttc ttgatcctgg
     1321 atctggcagg actgacccca cctccaagtc tccaggccac ccgaaaggcg accatcttgc
     1381 ccccagatga ctgtgattca gccgcacaag gactgcatca ggacttcgtc aggactgcag
     1441 gttccatgat agcctctcct atgatgtggg ctttgaggca taaaccactt ctagctgctt
     1501 ccatcccaaa ttccccactc ccaggtggat tccctcagcc ttggggaccc agggtcacag
     1561 agccctgaag tagggaggca taaccccctg cacatcatgt ctgtcaccct gggctgatgc
     1621 tgtctgaccc cacacacttt agcctaaggc tactttctca ggatctcaga tttactgtcc
     1681 ccacgtgggt ttcagccaca gcagtgggct ctggagcagg ggtgcccatg gggcttgcac
     1741 accttgccca ttcatcacca accagggctc tgcctgaggc acacacagat atccaactct
     1801 cgtcaccttc ccctgctccc tggaactaga cagacttgcc tttgggccct ttaacagaga
     1861 ctatcccatg tgggctttga ggccacatca ggtcaaaggc agctgcttcg tacagagcta
     1921 ggaccagacc cagccacctc gtgaagggag gtgaggactc aggctgatgg gaagatgttt
     1981 cacaaactgt gccaataaac ctgccctgga aagggcacag gtgggcgtcg aggctctccg
     2041 gtacctttgt tggtcgacga ggggaaaggc tggagaagag catgatgcta actcgtctgc
     2101 cagtcacatc tgccgcgggc atctccattc cttgggcctc gtttccctta accattaacc
     2161 tcagcatcgt ggacccccag cctgcacatg tgtgctctgt tgaagtctgt gtgttcatgg
     2221 ggggaaatct tgtttcatgt gtacaggtgt tctgctcaca tgtgcttctg tgcaccacat
     2281 gtgttctggc ctccaaggag gcctgaaggt ggtgttacat gcactggatc tagagagaag
     2341 cagtcaagtc actgtgaggg tgctgggtcc tctggaagtg cagacagcga tcttaacgac
     2401 tgagccgttc ctccagccat tttcaattgg tcagatgggg ggagggggca cggggcacgt
     2461 gcacttgagt gtagtgcccg tgaatgcccg agtcgtgagt cgtcccctcc cccctccaag
     2521 ggaactcaag tctccagaag ttgtgcgctg tctgacatgg cagctcagat ctgaaccccg
     2581 gtcctctgga agaggatgct gggagtttta gccctctcag tgagaggaac tgattgtttc
     2641 caaaactgtt ggaaccagaa tgggaaacag gaaaggagag gagacaacca gggattctca
     2701 gcctgcaatt gcttcccctg gggctcccaa ccctcgcgct ctggcctggg tttcagggtc
     2761 cagagttaaa gcactacttg ccactgtgcg gcctaagggg agcacgcggc taccttctcc
     2821 ccttggaagg caaaggctca agagtgctct ttacccaaaa tcaagtcttc caccttaggg
     2881 aaggactgga gagatggggg tgggggtaga gattccaagg gctgcccttt agtggggcaa
     2941 gaaggcctaa gcgcccttcc tggaccccta aaggttggca gacagggaag aaaatggcag
     3001 atgtaggggc tgaattctgt caaggagtgg aggcgggtcc catggtcctc cgtgtcctca
     3061 gagcctgctt ttacagtctg gggcaaattt ctactaggtg gtctgacagt actgcactgc
     3121 gtgggctcag cgaagagaac gccctggggg atgagtagtt gcaggtgggc tggaccagtg
     3181 gtgaagcttg cttaagtagc ccttccctgt ctgacccagg aagagcacag gctcttttgt
     3241 tagtttgaga actgggtctc accctgtagc cctgaaacac aatgtgtacc aggctgacct
     3301 cagaggtccg actgcctcct gctccagagc tctgggtcta aaggtgtgcg ccaccacacc
     3361 cttaggtttt cccaccagag tttagctttg aggctctccc ctgtgtgagt tttaagtgta
     3421 cctggaggtg aagctgccac tgtccttagc ccaggtctgg ctctgttcaa gccttgagga
     3481 agctctcctt ttccctcagc taccgtctga ggcttctgac tgggcaggtt tcccactcca
     3541 ggccagttct ctccagtcct ctctctgacg gttcccccaa catattctgg aggcctctcc
     3601 tgcctgtttt ctccacccta cccccacctc accccatcag ctctcactat catgtgcacc
     3661 aggaggaagt taacctaggt tggagggaag ggacctgtgc aggtggagtg tcttcccaga
     3721 agtctacagt ggcacgggcc tgaggtgttg ccctgtcaca cctgaaacct taccatgggt
     3781 ccctcctggg cttgtcagag agttttgaat acaaaagcgg tctagaggat ctccaaatac
     3841 accaggacca tgaagacagc tcaagagctt caaaagtcca gaatcaggat tttggggggc
     3901 agaatgcaga cggggtctta gctctggaga taggaccctg ttgggactta aggatagtgg
     3961 cccatcactc cacaaaggaa caaagccgag ggctggccct gggatgagga gttccccaga
     4021 atgatcccag tatgtcgggg ttgaggggta gaatggtcct taccaaggcc tcggaatatc
     4081 ctgaattaga tgtaaagtga ctagacaaca aaggagacgt ctgtagtcta cctgcctcca
     4141 ccttctgtat gggggatcag agaactgtca gagatggatg agagcccttg gaacgataac
     4201 aaaaagtgac tgaggtggcc ctagtgcaca tggagcttga cagcaactgt tctatgaaac
     4261 ctccatgtag ctgggcagaa ctgaagacct gaggggatcc caggttgggc tctagaagag
     4321 accctgtttt ctttgttgat accccagact ggcaccctgg gactcacagg ccagagtgac
     4381 cagccagcta tgacagcagt tggagacgcc caaaggctag tgaacggaga cttatggcct
     4441 gttactaaca ctactaggtc caacacagta catggctctt aaccccccaa gcttggagga
     4501 aaaagcagga ggatcaggag tctaaggtca tcctcaaata cagcaagttt gaggccagcc
     4561 tggtttcctg gagaccctgc ctcaaaagca acagtgacag aaaaaaaaaa aaacaaaaaa
     4621 ctaccacatc actgagtaac atttgagtta tgaaatacaa cattgggaag agtacagaag
     4681 acagtacctg taatgtaaat ctcttgtgta acccatgtca ggaagaagga aaagaaaaag
     4741 caagccatct cttcagaagg cccctactag cttttctgtt cactatgtag ccctggctaa
     4801 cctgcaactc cctatgtaga ccaggctggc ctcagacaaa ctcagagatc cacctgtctc
     4861 tgcctcctga gtgctgggat taagggcacg gcacaccaca gctggctggt acaatatatt
     4921 tttatttttc ata
//
