LOCUS       XM_039095172            4048 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DEXD/H-box helicase 60 (Ddx60),
            transcript variant X10, mRNA.
ACCESSION   XM_039095172
VERSION     XM_039095172.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4048
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4048
                     /gene="Ddx60"
                     /gene_synonym="AABR07025140.1; RGD1560014"
                     /note="DEXD/H-box helicase 60; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 49 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100360801"
                     /db_xref="RGD:1560014"
     CDS             368..3889
                     /gene="Ddx60"
                     /gene_synonym="AABR07025140.1; RGD1560014"
                     /codon_start=1
                     /product="DEXD/H-box helicase 60 isoform X5"
                     /protein_id="XP_038951100.1"
                     /db_xref="GeneID:100360801"
                     /db_xref="RGD:1560014"
                     /translation="MEKRCTMFLEGMSQLILENIPRADYSSLFNDFVESEFFLIDGDS
                     LLLTCVCEMSLEPGQSLHFFYLVERYLLDVTSKGGQFAIVFFKDAEYAYFSVPELLTL
                     RTSLILHLQKNTTIEVWTMFSNCLSEEWSICLNQSCPYFLIVADEGLDHLQTHLLNFV
                     VIQAWAAKVNVVLFSGQTSDILRLYAYFMQSSYTNQMFFKKNEETIMNVYKALIEQLE
                     KYRDRALTPLFGDLKFNDMEKEVSEIVSLLKQLWPEGSDIRRVFCVTSCSLFLEMYHS
                     YLENREKRASTETSEVTQKPDNCLTLKDVEDFCKLHCLSVAFQLHLPLSQRARSRFIT
                     SNWIQDLQTVLKMKEWCEYFTLNNVDIFEFWSLDLLHVSDLSDEPLLKNIAFYYEYEN
                     KGGLDLKVGDVIMKEYIHLWDTVSKLVKKFDVGKPTPLRTTKVHFIEKTLSPIKESSQ
                     ETMPNLGFIPISCNLVDEFTRDILKDLPFLKSDDPIVTSLVKHKEFDELVHWHSHRPL
                     SDDYDRTKATFDDKKDPYYLSRLQKYHRFQRLYGSSLESVTSKMITTEGPKPKKDCIK
                     SKRTKAHKTKAEIIVRENKKRLIAEEEQKEGQKWSALSFSIEEEMRRNLNSGIKKLEE
                     FLKSCKSSSVKTQAERVGLQACLKAWKEHCRAEGKTTKDFNIAVNMMKRIHSLLEKQS
                     EFLQEADQKLIARCLTYLGFYELADSLCPTQDTADDVKMTKKKYSVGIGPARFQLQYM
                     GHYLIREERKDPDPRVQDFIPDTWQRELLDVVDNYESAVIVAPTSSGKTYASYYCMEK
                     VLKESNEGVVVYVAPTKALVNQVAATVQNRYTKNMPGGEALCGVFTRDYRHEALNSQV
                     LITVPACFEILLLAPHRQNWVKRIRYVIFDEVHCLGGEIGAEIWEHLLVMIRCPFLAL
                     SATISNPQHLTEWLQSVKRYWKQVDSTMEQGSVSQRNAATRGSYHKDRVQARQSYKVR
                     LVLYGERYNDLEKYLCSVRQGDVCFDHFHPCAALTTDHIEKYGFPSDLALSPRESIQL
                     YDTMCQVWKSWPQAQNLCPENFTQFKNKIVIKKLDARKYEESLKEEFTNWVKNGNEKE
                     AQLVLKKLSPDYHDYSGQMLDFFPCLVEKLRKMEKLPALFFLFSLDTVEECAESVCEF
                     LEEKQEEKRPPKADKVAYTMTNKLRKV"
ORIGIN      
        1 gtgactccga agcttccgct atagggagcg agcgaactca gttctcccgc gggcgattct
       61 gcgcgcactt ggaacctgca gcacagacca gcggctctgc aaccagcagg tcccagttcc
      121 caatctgggc ttcccggtgg cggtatcttc cacggacata ggaagctttc tgtcttaacg
      181 cgcatgctgg tagcctaatt accagagaga ctgtcctgtt aaataaggac gtcagtccgc
      241 ccaacagtag gaaactgtgc aagatatgct gtttcattat taatgaccat tgagaggaaa
      301 cagagtaaag gatatttaca tttttaattt tccccaggtc gggttggaag cacagatagc
      361 agcaagaatg gaaaaacgat gcacaatgtt tttagaagga atgtcgcaat taatcttgga
      421 aaatatacca agagctgact attccagctt attcaatgat tttgttgaat ctgagttctt
      481 tctgattgat ggtgactcct tgctcctcac atgtgtgtgt gagatgtcac ttgagccagg
      541 acagagtctc catttcttct acctggttga acgctacctg ctggatgtta cgagcaaagg
      601 agggcaattt gccatcgttt tcttcaagga tgctgaatat gcatacttca gtgtcccaga
      661 acttcttaca ctgagaactt ctttaattct gcatcttcag aagaatacca ccattgaagt
      721 ttggactatg ttttctaact gcttgtcaga agagtggagt atttgcttga atcagagctg
      781 cccatatttc ttgatagtgg ctgacgaagg cctagaccac ctgcaaacac atcttttaaa
      841 ctttgtagtc attcaggctt gggcagcaaa ggtcaatgtt gtgcttttct cagggcaaac
      901 atctgacatc cttcgtcttt atgcatactt tatgcaaagc tcgtacacaa accagatgtt
      961 ttttaagaag aatgaagaaa cgattatgaa tgtttacaaa gccctgattg aacagttgga
     1021 aaaatacaga gatagggctt taacacctct gttcggagat ttaaaattca atgatatgga
     1081 aaaagaggta tctgaaattg tatctttgct gaagcaactc tggccagaag gatctgacat
     1141 ccgacgtgtc ttttgtgtca cctcatgttc tctcttcttg gaaatgtacc acagctactt
     1201 agaaaacaga gagaagagag catccacaga gacatccgaa gtcacacaga aaccagataa
     1261 ttgcttaacc ctgaaggacg tggaagactt ttgtaagcta cattgcctca gtgtggcttt
     1321 tcagctccat ttacctctct cccagagagc tcgctcaaga ttcatcactt cgaattggat
     1381 tcaggacctc cagactgtct taaaaatgaa agagtggtgc gagtatttca ccctaaataa
     1441 tgtggatata tttgaatttt ggagccttga tttacttcac gtttctgact taagtgatga
     1501 gcctttgttg aagaatattg ctttttacta tgagtatgaa aataaaggag gcctggattt
     1561 gaaagtaggc gatgtcatca tgaaagagta tatacatctc tgggacactg tgtcaaagtt
     1621 agtcaaaaag tttgatgtgg gaaaaccaac tcctctgaga acaacaaaag ttcattttat
     1681 tgaaaagaca ctgtcgccaa tcaaagaaag ttcccaggag acgatgccaa atttaggttt
     1741 cattccaata tcatgtaatt tagttgatga gtttactaga gacattttga aagacttgcc
     1801 tttcctaaag agtgatgacc ccattgttac gtcactggtt aagcataagg aatttgatga
     1861 gcttgtgcac tggcattccc acagacccct gagtgatgat tatgacagga caaaggccac
     1921 ttttgatgac aaaaaagacc cctattatct ttcacgtttg cagaagtatc atcgttttca
     1981 acgattatat gggagctcat tagaatcagt cacttcaaag atgatcacaa ctgaaggtcc
     2041 taagccaaag aaggattgta ttaagtctaa gagaacaaag gcacataaga ccaaggctga
     2101 aataattgta agagagaata aaaagagatt aattgctgag gaagaacaaa aagaagggca
     2161 aaaatggagt gccctgtcat tttctatcga ggaggagatg agaaggaatt taaactctgg
     2221 aataaagaag ctggaagagt tcttgaaatc atgtaaaagt agctcagtga aaactcaggc
     2281 tgagagagtt gggttacagg cttgcttgaa agcctggaag gaacattgcc gagctgaagg
     2341 taaaaccaca aaagacttca acatagctgt caacatgatg aagaggatcc actccttgtt
     2401 ggaaaaacaa tctgaatttt tgcaagaagc agatcaaaaa ctcatagcca gatgtcttac
     2461 gtatttaggg ttttatgagc tagcagattc tttatgtcca acccaggaca cagcagatga
     2521 cgtaaagatg acgaaaaaga aatactcagt tgggattggg ccagctcggt tccaactaca
     2581 gtatatgggt cactatctga tacgagaaga aaggaaagac ccagacccca gggtccaaga
     2641 ctttattcct gacacgtggc agcgagagct cctggatgtg gtggataact atgagtctgc
     2701 agtgattgtc gccccaacat cgtctggcaa aacttatgct tcctactact gcatggaaaa
     2761 agtgctgaaa gagagtaatg aaggcgtggt tgtgtatgtt gcaccaacaa aggctcttgt
     2821 taatcaagtg gcagcaacag ttcaaaatcg ttacaccaaa aatatgccag gtggtgaagc
     2881 tctctgtggt gtttttacta gggactaccg tcatgaagcc ctcaactctc aggtgcttat
     2941 taccgtgcct gcctgctttg aaattctgct actagctcct catcggcaaa attgggtgaa
     3001 gaggatcaga tacgttatat ttgatgaggt ccattgtctt ggtggagaaa ttggagcaga
     3061 aatctgggag catctccttg tcatgatccg atgtcccttt ttggcccttt cagctaccat
     3121 tagtaaccct cagcatctca ccgagtggct ccagtcagta aagcggtact ggaaacaagt
     3181 agacagtacc atggaacaag gatctgtttc ccaaagaaat gctgccaccc gtggcagcta
     3241 tcacaaagac cgagtgcaag ccagacagtc atacaaagtt agacttgtgc tctatggaga
     3301 gagatataat gatctagaga agtatttgtg ttcggtgaga cagggcgatg tttgctttga
     3361 tcattttcac ccatgcgctg cactaaccac agatcacatt gaaaagtatg gatttccttc
     3421 tgatcttgcc ttgtcacccc gagaaagcat tcagctatat gacactatgt gccaggtctg
     3481 gaagagttgg cctcaggccc agaacctatg tccagagaac ttcactcaat ttaagaataa
     3541 aatagtcatt aaaaagctgg atgctagaaa atatgaagag agcttaaagg aagaattcac
     3601 aaattgggtt aaaaatggga acgagaagga ggcccaactt gtactgaaaa aactgagtcc
     3661 tgattaccat gactactcag ggcagatgct ggactttttc ccatgtctcg ttgagaagct
     3721 aaggaagatg gagaagttgc ctgcactatt ctttctattt agtttagata ctgtagaaga
     3781 atgcgctgaa agtgtttgtg aattcctaga ggaaaaacag gaggagaaaa gacctcccaa
     3841 agctgataaa gtagcttata ccatgactaa caaacttcga aaagtttaaa aatctctgga
     3901 gaaacaaaaa atagatgaaa agggtcagaa atcttccaga agattggatc aaagcattat
     3961 gtatgaagct gaacacaatt acctcctgaa gagtctggag aagaatctag agattcccaa
     4021 ggactgcaca tatgctgatc agaaggca
//
