LOCUS       NM_001190820            2148 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus DEAD-box helicase 59 (Ddx59), transcript variant
            1, mRNA.
ACCESSION   NM_001190820
VERSION     NM_001190820.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2148)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2148)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 2148)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DY317721.1, DY310785.1, CO398251.1, BC081871.1 and CR477587.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132263,
                              SAMD00132264 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-21                DY317721.1         1-21
            22-652              DY310785.1         46-676
            653-1323            CO398251.1         1-671
            1324-2139           BC081871.1         1188-2003
            2140-2148           CR477587.1         9-17                c
FEATURES             Location/Qualifiers
     source          1..2148
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q13"
     gene            1..2148
                     /gene="Ddx59"
                     /note="DEAD-box helicase 59"
                     /db_xref="GeneID:289402"
                     /db_xref="RGD:1359520"
     exon            1..128
                     /gene="Ddx59"
                     /inference="alignment:Splign:2.1.0"
     exon            129..943
                     /gene="Ddx59"
                     /inference="alignment:Splign:2.1.0"
     CDS             140..1999
                     /gene="Ddx59"
                     /EC_number="3.6.4.13"
                     /note="isoform 1 is encoded by transcript variant 1;
                     probable ATP-dependent RNA helicase DDX59; DEAD box
                     protein 59; DEAD (Asp-Glu-Ala-Asp) box polypeptide 59;
                     zinc finger HIT domain-containing protein 5"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DDX59
                     isoform 1"
                     /protein_id="NP_001177749.1"
                     /db_xref="GeneID:289402"
                     /db_xref="RGD:1359520"
                     /translation="MFVPRSLKLKRNSNDDLKSCEAKKSKPEAAGLQLEGNRETLVLE
                     SVTKEAVTADRPGSASSTSSPSCQLAEVCSTGPDQGVKDSHPSEEPVKSFSKTQRWPE
                     PGEPVCVVCGRYGEYICDKTDEDVCSLECKAKHLLQVKEEEGSLKPSSPQGAASEPES
                     PLDAFYVYKEHPFIVALRDDQIETLKQQLGISVQGQEVARPIIDFEHCGFPETLNQNL
                     KKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRALPEDKTPSALI
                     LTPTRELAIQIERQAKELMRGLPRMKTVLLVGGLPLPPQLYRLQQHVKVVIATPGRLL
                     DIIEQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPSDCQTVLVSATIPDSID
                     QLADQLLHNPVRIVTGDKNLPCSSVRQIILWVEDPAKKKKLFEILNDQKLFKPPVLVF
                     VDCKLGADLLSEAVQKITGLSSTSIHSEKSQVERREILKGLLEGDYEVVVSTGILGRG
                     LDLVNVKLVVNFDMPSSLDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAKRVKP
                     TGSILPPQLLNSPYLHEQKRKEQQKDRQTQSSLVTGANLMDIIRKHEKSSSQK"
     exon            944..1111
                     /gene="Ddx59"
                     /inference="alignment:Splign:2.1.0"
     exon            1112..1201
                     /gene="Ddx59"
                     /inference="alignment:Splign:2.1.0"
     exon            1202..1453
                     /gene="Ddx59"
                     /inference="alignment:Splign:2.1.0"
     exon            1454..1606
                     /gene="Ddx59"
                     /inference="alignment:Splign:2.1.0"
     exon            1607..1735
                     /gene="Ddx59"
                     /inference="alignment:Splign:2.1.0"
     exon            1736..2148
                     /gene="Ddx59"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcgcaggcg cgggaccctc aaaccctgac ttggtctgtg gagcttcccg gcttctcggc
       61 cggaggctcg gcctagcgcc tggaagggag cggcccgagc gggaacggac gcggccgggt
      121 ccgcgcggaa tgttgaagaa tgtttgttcc aagatctttg aaactcaaga ggaattctaa
      181 tgatgacctc aaaagctgcg aagccaaaaa aagtaagcca gaagcggcag gccttcagct
      241 ggaaggaaac agagaaactc tggtcctcga atcagttact aaggaagctg tcacagcaga
      301 caggcccggc agtgcatcga gcacatccag cccttcttgc cagttggctg aggtttgttc
      361 cacaggacct gatcagggtg tgaaggacag ccacccatct gaagagccgg taaagtcatt
      421 ttccaaaacc cagcggtggc cagaacctgg ggagcccgtc tgtgttgtct gcggtcgtta
      481 cggagagtat atttgtgaca agaccgacga agacgtgtgt agcttggagt gcaaagcaaa
      541 acatctgctg caagttaagg aagaggaagg atcattaaaa cccagcagcc cacagggagc
      601 tgcttccgag ccagagtccc cactggatgc cttttatgtc tacaaagagc acccctttat
      661 tgtggccctc agggacgacc agattgaaac ccttaaacag cagctaggaa tctcagtcca
      721 aggacaagaa gttgccaggc ccattattga cttcgagcac tgtggcttcc ccgagacctt
      781 aaatcagaac ttgaagaagt caggctacga agtgccaact cccatccaga tgcagatgat
      841 tcctgtgggg cttctgggaa gagacattct ggccagcgca gacactggct cagggaaaac
      901 ggcagctttt ctcctacctg taattatccg agctttacct gaggataaaa ctccatctgc
      961 actcattctc acaccaacac gagaactggc cattcagata gagaggcagg ccaaggaact
     1021 gatgaggggg ctgcctcgaa tgaagacagt gcttctcgtg gggggcttac ctttaccccc
     1081 gcagctctat cgcctacagc agcatgtgaa ggttgtcata gcaacccccg gacgacttct
     1141 ggatataatt gaacagagct ccgtatcgct cagcggcata aagattgtcg tagtagatga
     1201 agctgacacc atgttgaaga tgggctttca gcagcaagta ctggatgttt tggaacacac
     1261 tccgagcgac tgtcagaccg tcttggtttc tgccacaatc ccagatagca tagaccagct
     1321 tgcagaccag cttctgcata atcctgtgag gattgtcacc ggggacaaga acctgccctg
     1381 ctccagcgtg cggcagatca tcctgtgggt agaagaccca gccaaaaaga agaagttgtt
     1441 tgaaatccta aatgatcaga agctctttaa gcctccagtg ttagtatttg tggactgcaa
     1501 acttggcgca gatctgctga gcgaggcggt tcagaagatc acaggcctga gcagcacatc
     1561 catccactcc gagaagtcgc aggtggagag gagggagata ctgaagggac tactggaagg
     1621 agactatgaa gtggtggtga gcacggggat cctgggccga ggcctagatt tggtcaacgt
     1681 caagctggtt gtgaattttg atatgccttc aagcctggat gagtatgttc accaggttgg
     1741 cagagttggg agactgggtc aaaatggaac ggcaattaca ttcatcaata acaactctaa
     1801 aagactcttc tgggatgttg ccaaaagagt gaagcccacg ggatccattc tcccgccaca
     1861 actcttaaat tctccttacc ttcatgagca gaagagaaag gaacagcaga aggacagaca
     1921 gacacagagc agcctggtca caggggccaa cctcatggac attattagga aacacgagaa
     1981 gagcagttca cagaagtgac ctggcctgcc gtttcccctg ggttaatgca ttgccatccg
     2041 aatctcaatg gctgctgtgt gactgcgtct gtacacttgt gcgagcaaca gagggatctc
     2101 taagttctct tttaatttaa taaaatccgt acaacaatat tgtattta
//
