LOCUS       NM_001271326            2343 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus DEAD-box helicase 55 (Ddx55), mRNA.
ACCESSION   NM_001271326 XM_002724816 XM_002727964
VERSION     NM_001271326.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2343)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   2  (bases 1 to 2343)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   3  (bases 1 to 2343)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On or before Sep 16, 2012 this sequence version replaced
            XM_002727964.2, XM_002724816.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643289.32298.1,
                                           SRR26360194.1159651.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-147               JAXUCZ010000012.1  37711052-37711198   c
            148-198             JAXUCZ010000012.1  37709564-37709614   c
            199-285             JAXUCZ010000012.1  37709397-37709483   c
            286-377             JAXUCZ010000012.1  37707561-37707652   c
            378-440             JAXUCZ010000012.1  37707397-37707459   c
            441-590             JAXUCZ010000012.1  37706293-37706442   c
            591-780             JAXUCZ010000012.1  37705070-37705259   c
            781-863             JAXUCZ010000012.1  37702113-37702195   c
            864-995             JAXUCZ010000012.1  37701080-37701211   c
            996-1088            JAXUCZ010000012.1  37699226-37699318   c
            1089-1203           JAXUCZ010000012.1  37698024-37698138   c
            1204-1372           JAXUCZ010000012.1  37697567-37697735   c
            1373-1665           JAXUCZ010000012.1  37696399-37696691   c
            1666-2343           JAXUCZ010000012.1  37695444-37696121   c
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q15"
     gene            1..2343
                     /gene="Ddx55"
                     /note="DEAD-box helicase 55"
                     /db_xref="GeneID:100362764"
                     /db_xref="RGD:2324094"
     exon            1..147
                     /gene="Ddx55"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..1842
                     /gene="Ddx55"
                     /EC_number="3.6.4.13"
                     /note="DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
                     /codon_start=1
                     /product="ATP-dependent RNA helicase DDX55"
                     /protein_id="NP_001258255.1"
                     /db_xref="GeneID:100362764"
                     /db_xref="RGD:2324094"
                     /translation="MEHVTEGSWESLQVPLHPLVLGALRELGFLHMTPVQSATIPLFM
                     RNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKNQVGAIVITPTRELAIQIDEVL
                     SHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVATPGRLEDMFRRKAEGLDLAS
                     YVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLR
                     NPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKFNQLVHFLRSRQQEKHLVFFST
                     CACVEYYGKALEALVQRVKILCIHGKMKYKRNKIFMEFRKLQSGILVCTDVMARGIDI
                     PEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEEAYINFLAINQKCPLQ
                     EMSLQRNTVDLLPKLRAMALADRAVFEKGMKAFVSFVQAYAKHECSLIFRLKDLDFAG
                     LARGFALLRMPRMPELKGKQFPDFVPVDIDTDTIPFKDKIREKQRQKLLEQKRKERTE
                     NEGRRKFIKNKAWSKQKAKKERKKKMNAKRKKDEGSDIDDEDMEELLNDTRLLKKFKK
                     GKITEEEFEKGLLTSTKRTVRLTESGVSDSEEDS"
     exon            148..198
                     /gene="Ddx55"
                     /inference="alignment:Splign:2.1.0"
     exon            199..285
                     /gene="Ddx55"
                     /inference="alignment:Splign:2.1.0"
     exon            286..377
                     /gene="Ddx55"
                     /inference="alignment:Splign:2.1.0"
     exon            378..440
                     /gene="Ddx55"
                     /inference="alignment:Splign:2.1.0"
     exon            441..590
                     /gene="Ddx55"
                     /inference="alignment:Splign:2.1.0"
     exon            591..780
                     /gene="Ddx55"
                     /inference="alignment:Splign:2.1.0"
     exon            781..863
                     /gene="Ddx55"
                     /inference="alignment:Splign:2.1.0"
     exon            864..995
                     /gene="Ddx55"
                     /inference="alignment:Splign:2.1.0"
     exon            996..1088
                     /gene="Ddx55"
                     /inference="alignment:Splign:2.1.0"
     exon            1089..1203
                     /gene="Ddx55"
                     /inference="alignment:Splign:2.1.0"
     exon            1204..1372
                     /gene="Ddx55"
                     /inference="alignment:Splign:2.1.0"
     exon            1373..1665
                     /gene="Ddx55"
                     /inference="alignment:Splign:2.1.0"
     exon            1666..2343
                     /gene="Ddx55"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttccgggcg gctgaaacag cggagacttc ttgcgcgcca tggaacacgt gacggagggt
       61 tcctgggagt cgctgcaggt gccgctgcat cctctggtgc tcggagctct gcgcgagttg
      121 ggcttcctgc acatgacgcc ggtgcagtct gccaccatcc ctctgttcat gagaaacaaa
      181 gatgttgctg cagaagccgt caccgggagt ggaaaaactc tggcttttgt catccccatt
      241 ctggagatcc ttctgagaag ggaggagaag ttaaagaaga accaggtagg agccatcgtc
      301 atcaccccca ctcgggagct ggccattcag attgatgagg tcctgtcaca cttcacgaag
      361 cacttcccgc agttcagcca gattttgtgg attggaggcc ggaaccctgg agaagatgtg
      421 gagaggttca agcagcacgg tgggaacatc attgtggcaa ccccaggccg cctggaggac
      481 atgttccgga ggaaggctga gggtctggac ctggccagct atgtgaagag cttggatgtc
      541 ctggtgctgg acgaggcaga cagacttctc gacatgggct ttgaggcaag cataaacaca
      601 atcctggagt ttttgccaaa gcagaggcga acaggccttt tctcggccac tcagacacag
      661 gaggtggaga acttggtgcg agcaggcctc cgcaaccctg tccgaatctc tgtgaaggag
      721 aagggcgtgg cagccagcag cacccagaag acaccgtctc gtctggagaa ccactatatg
      781 atatgtaagg cagatgagaa attcaaccag ctggtccatt tccttcggag ccgtcagcag
      841 gaaaagcacc tggtcttctt cagcacgtgc gcgtgtgtgg aatactatgg aaaggccctg
      901 gaggcgctgg tgcagagggt gaagatcctg tgcatccacg ggaagatgaa gtacaagcgc
      961 aataagatct tcatggagtt ccgcaagctg cagagtggga tcttggtgtg cactgacgtg
     1021 atggcccggg gaattgatat tcctgaagta aactgggttt tgcagtacga ccctcccagc
     1081 aacgccagtg ccttcgtgca tcgatgtgga cgcactgccc gaattggcca cggtggcagt
     1141 gctctggtgt tcctgctgcc catggaggaa gcgtacatca acttcttggc catcaaccag
     1201 aaatgccccc tgcaggagat gagcctccag agaaacactg tagaccttct acccaagctc
     1261 cgggccatgg ccttggctga cagagccgtg ttcgagaagg gcatgaaagc cttcgtgtcc
     1321 tttgttcagg cttatgcaaa gcacgagtgc agtctcatct tcaggttgaa ggatcttgac
     1381 tttgctgggc ttgctcgagg ctttgccctg ctgaggatgc ccaggatgcc agaactaaag
     1441 gggaagcagt ttccagattt tgtaccagtg gacattgata ctgacacaat cccatttaag
     1501 gataaaatta gagaaaaaca gaggcagaaa cttttggagc aaaaaagaaa agagaggaca
     1561 gaaaatgaag ggagaagaaa attcatcaaa aataaagctt ggtcaaagca gaaggccaaa
     1621 aaggaaagga agaagaagat gaatgcaaag aggaaaaagg atgagggttc tgatattgat
     1681 gatgaggaca tggaggaact ccttaatgac acaaggctct tgaaaaaatt taaaaaaggt
     1741 aaaatcacag aagaagaatt tgagaagggg ctgttgacaa gtaccaaaag aacagtccgg
     1801 ctgacagagt caggtgtctc ggactcagaa gaggacagtt gacctgagcc tcaggtgagg
     1861 gctacctcac agctggcctc acattcctac ccttgctgga agactgtggt tcagactgag
     1921 agaaaccaaa ggactgcaca cacgagcaca aggatcctac cagaatctca gtgtattgag
     1981 tgtacataac agatctcagt atttattttg attaattgtg ctttttctgg ggtgactttt
     2041 gtgctttatt actgacttaa agtgtatata tatatgtatg tatgtatgta tttttctcac
     2101 ttttaagaaa acagataata aagtatactt gattttaggc cttgtaaatt tctaagtcac
     2161 ttgacatgcc ctggcctcct cccaccccac actttgcatt tcctttacag ccctaccaag
     2221 agcacccaca ggggcagagg ggactgtgtg tagggttctt ttttctcttc ttttcattgc
     2281 aacagggcta caccattgta gtggtttgta tatgcttggc ccatgggaag cggcactatt
     2341 agg
//
