LOCUS       NM_001401167            2482 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus DEAD-box helicase 51 (Ddx51), mRNA.
ACCESSION   NM_001401167 XM_006249561
VERSION     NM_001401167.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2482)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 2482)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 2482)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Feb 3, 2022 this sequence version replaced XM_006249561.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643286.35719.1,
                                           SRR26643298.81467.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-309               JAXUCZ010000012.1  51675456-51675764   c
            310-443             JAXUCZ010000012.1  51675228-51675361   c
            444-594             JAXUCZ010000012.1  51674634-51674784   c
            595-740             JAXUCZ010000012.1  51674233-51674378   c
            741-812             JAXUCZ010000012.1  51674082-51674153   c
            813-919             JAXUCZ010000012.1  51673822-51673928   c
            920-1028            JAXUCZ010000012.1  51673543-51673651   c
            1029-1174           JAXUCZ010000012.1  51673311-51673456   c
            1175-1367           JAXUCZ010000012.1  51672988-51673180   c
            1368-1483           JAXUCZ010000012.1  51672773-51672888   c
            1484-1600           JAXUCZ010000012.1  51672578-51672694   c
            1601-1702           JAXUCZ010000012.1  51672297-51672398   c
            1703-1766           JAXUCZ010000012.1  51672062-51672125   c
            1767-1901           JAXUCZ010000012.1  51671836-51671970   c
            1902-2482           JAXUCZ010000012.1  51671078-51671658   c
FEATURES             Location/Qualifiers
     source          1..2482
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..2482
                     /gene="Ddx51"
                     /note="DEAD-box helicase 51"
                     /db_xref="GeneID:304570"
                     /db_xref="RGD:1309580"
     exon            1..309
                     /gene="Ddx51"
                     /inference="alignment:Splign:2.1.0"
     CDS             21..1928
                     /gene="Ddx51"
                     /EC_number="3.6.1.-"
                     /note="DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
                     /codon_start=1
                     /product="ATP-dependent RNA helicase DDX51"
                     /protein_id="NP_001388096.1"
                     /db_xref="GeneID:304570"
                     /db_xref="RGD:1309580"
                     /translation="MALFHIARYAGPEAAGLGDTEAEAGGRARVLLERLQNRAREREQ
                     RQPELESTGTAAEAPVRRRRRPRRRRGVSGSVAEKPEAPRAKRQKVEDDVDAGRGEET
                     PEELSESAEDPGESPQEDVQRPPAPGRVLGDFARKKVPKVQPFLPAWLAKPSCVKKSV
                     TEDLTPIEDIPEVHPDLQKQLRANGISSYFPVQAAVIPALLESADNGFLVGRGGYQPS
                     DLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQVSKVFNIYTDTT
                     PLRVALVTGQKSLAKEQESLVQKTADGFCCLADIVVATPGRLVDHIDQTPGFSLQQLR
                     FLIIDEADRMIDSMHQSWLPRVVAAAFYTEDPTGSCALLQRTQPQAVTAASTCIPQMP
                     LQKLLFSATLTQNPEKLQRLGLYQPRLFSTRLGHQSPRDTVEVDENLGKYTFPVGLTH
                     HYVPCRLSSKPLIVFHLVLGMNFSRALCFTNSRENSHRLFLLAQAFGGVSVAEFSSRY
                     GPGQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTA
                     RAGKTGQAFTLLLKVQERKFLQMVSEAGVPELACHEVPRKLLQPLVARYETALSQLEK
                     TVKEEQKLKAA"
     exon            310..443
                     /gene="Ddx51"
                     /inference="alignment:Splign:2.1.0"
     exon            444..594
                     /gene="Ddx51"
                     /inference="alignment:Splign:2.1.0"
     exon            595..740
                     /gene="Ddx51"
                     /inference="alignment:Splign:2.1.0"
     exon            741..812
                     /gene="Ddx51"
                     /inference="alignment:Splign:2.1.0"
     exon            813..919
                     /gene="Ddx51"
                     /inference="alignment:Splign:2.1.0"
     exon            920..1028
                     /gene="Ddx51"
                     /inference="alignment:Splign:2.1.0"
     exon            1029..1174
                     /gene="Ddx51"
                     /inference="alignment:Splign:2.1.0"
     exon            1175..1367
                     /gene="Ddx51"
                     /inference="alignment:Splign:2.1.0"
     exon            1368..1483
                     /gene="Ddx51"
                     /inference="alignment:Splign:2.1.0"
     exon            1484..1600
                     /gene="Ddx51"
                     /inference="alignment:Splign:2.1.0"
     exon            1601..1702
                     /gene="Ddx51"
                     /inference="alignment:Splign:2.1.0"
     exon            1703..1766
                     /gene="Ddx51"
                     /inference="alignment:Splign:2.1.0"
     exon            1767..1901
                     /gene="Ddx51"
                     /inference="alignment:Splign:2.1.0"
     exon            1902..2482
                     /gene="Ddx51"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaccaaggcg tgcagcagct atggcgctgt tccacatagc gcggtacgcg ggcccggagg
       61 ctgcggggct gggggatacg gaggcagagg ccggaggccg agctcgagtg cttctggagc
      121 gactgcagaa cagagcccgt gagcgggagc agcggcagcc ggagctcgag tccaccggga
      181 cggctgcgga agcgccagtt aggcggcgac ggcggccccg acggcggcgt ggggtgagcg
      241 gctcggtggc tgagaagccg gaggctccta gggctaagcg gcagaaagtg gaagacgacg
      301 tggacgcagg gagaggtgag gagacgccgg aggagctcag tgagagtgca gaggacccag
      361 gtgagagccc tcaggaggat gtccagagac ccccagctcc aggccgggtg ttgggggact
      421 ttgcaaggaa gaaggttccg aaggtccagc ctttcctgcc agcatggttg gccaagccaa
      481 gctgtgtcaa gaagagtgtc actgaggatc ttactcctat tgaggacatc cctgaggttc
      541 accctgactt gcagaagcag ttgagggcta atggcatctc ttcctacttt ccagtccagg
      601 cagctgtgat tcccgccctc ctcgagagtg ctgacaatgg atttctcgta ggcagaggtg
      661 gctaccaacc tagtgacctc tgcgtttctg ccccaacagg cagtgggaaa acactggcct
      721 ttgtcatccc cgtggtgcaa gccctgttgc atcgagtggt ctgtcacatc cgtgcgctgg
      781 ttgtgcttcc cactaaggag ctggcccaac aggtgagcaa agtattcaac atctacacgg
      841 acaccacacc tctgcgggtt gccttggtga ctggacagaa gtcactggcc aaggagcagg
      901 agagccttgt ccagaagaca gcagatggtt tctgttgcct ggctgacatt gtggtggcca
      961 cacctggccg cctggtggac cacattgacc agactccagg attcagcctc cagcagctcc
     1021 gcttcctgat cattgatgag gctgaccgga tgatagacag catgcaccag tcctggctgc
     1081 cacgagtggt ggcggcagcc ttctacactg aggaccccac aggctcctgt gccctgctcc
     1141 agaggacaca gccccaggct gtgactgctg ccagcacctg cattccccag atgcctctgc
     1201 agaagctgct gttctcagcc acactgaccc agaaccctga gaagctgcag cgcctcggcc
     1261 tgtaccagcc aaggcttttc tccacaaggc tgggacacca aagccctaga gacacagttg
     1321 aggtggatga aaacctgggg aagtacacct tccctgtggg gctcacgcat cactatgtgc
     1381 catgcagact cagctcgaag ccactcattg tctttcacct ggtccttggg atgaacttct
     1441 cgagggctct ttgcttcacc aactcccgag agaattccca caggctcttc ctgttagcac
     1501 aagcttttgg gggtgtgagt gtggctgaat tctcctcccg ctatgggcct ggccaaagga
     1561 agaaaatctt gaagcagttt gaacagggaa agatccagct ccttatcagc acagatgcta
     1621 ccgctcgagg catcgatgtg cagggtgtgg agctggtgat caactatgat gctccgcagt
     1681 acctgaggac ctatgtgcat agggtaggga gaacagcccg agctgggaaa actggacagg
     1741 ccttcacact tctcttgaaa gtgcaggaaa ggaagttcct tcagatggtg tcagaagctg
     1801 gggtgcctga gctggcatgc catgaggtcc ccaggaagct cctgcagcca ctggttgctc
     1861 gttacgagac agccttgtct cagctggaga aaactgtcaa ggaggaacaa aagctgaagg
     1921 cagcctagat gggaacatcc tgtgaacaga agataacagc tccttggggt tccagtggga
     1981 acaacccttc ttcccaacat cgtgggcatc tggtcgactt gggacaggca gcctagttgg
     2041 tggcctggtc ctgaaaaata atggctcttg ggttggactg ctggtgtcca gttgatcttc
     2101 agaaataagc tcaggcgaaa ctgaaggaag ccctcaggag tgtgaccaaa aactatggtg
     2161 actacagatt aaagtgttta tctgttagca tcacacgtct acagagatgt tatggtgggc
     2221 ctgccccagg caagtcatta gaggcaagaa caggttgaag attccttggc tgctagtctt
     2281 caagatcgta ctttataatc cgccaccacc catttaagtt cttaaatggt ggaagaatcc
     2341 ttccctgagc atcgtcaagg agtcttagca cttacctgtg cttataagga ggcctgtttt
     2401 tgaaaagtct gtgtgtcaaa aaaggtaaac tattttcatt tgtattcaga aaaaaaaata
     2461 aaatggatca cttgaaccca ta
//
