LOCUS       NM_001015005            1747 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus DEAD-box helicase 47 (Ddx47), mRNA.
ACCESSION   NM_001015005 XM_216291
VERSION     NM_001015005.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1747)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1747)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 1747)
  AUTHORS   Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   4  (bases 1 to 1747)
  AUTHORS   Sekiguchi T, Hayano T, Yanagida M, Takahashi N and Nishimoto T.
  TITLE     NOP132 is required for proper nucleolus localization of DEAD-box
            RNA helicase DDX47
  JOURNAL   Nucleic Acids Res 34 (16), 4593-4608 (2006)
   PUBMED   16963496
REFERENCE   5  (bases 1 to 1747)
  AUTHORS   Lee JH, Rho SB and Chun T.
  TITLE     GABAA receptor-associated protein (GABARAP) induces apoptosis by
            interacting with DEAD (Asp-Glu-Ala-Asp/His) box polypeptide 47 (DDX
            47)
  JOURNAL   Biotechnol Lett 27 (9), 623-628 (2005)
   PUBMED   15977068
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB761683.1 and BC091696.1.
            
            On Jun 30, 2010 this sequence version replaced NM_001015005.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091696.1, SRR8487226.72384.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132263
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-30                CB761683.1         13-42
            31-1747             BC091696.1         24-1740
FEATURES             Location/Qualifiers
     source          1..1747
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q43"
     gene            1..1747
                     /gene="Ddx47"
                     /note="DEAD-box helicase 47"
                     /db_xref="GeneID:297685"
                     /db_xref="RGD:1310437"
     exon            1..99
                     /gene="Ddx47"
                     /inference="alignment:Splign:2.1.0"
     CDS             13..1380
                     /gene="Ddx47"
                     /EC_number="3.6.4.13"
                     /note="DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DDX47"
                     /protein_id="NP_001015005.2"
                     /db_xref="GeneID:297685"
                     /db_xref="RGD:1310437"
                     /translation="MAADEEPDSPTEALQTAAEEEETKTFKDLGVTDVLCEACDQLGW
                     AKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTR
                     ELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENT
                     KGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRA
                     ALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNT
                     QRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDV
                     VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFPTQ
                     DEEVMMLTERVSEAQRFARMELREHGEKKKRKREDPGDDDDTEGAIGVRNKVAGGKMK
                     KRKGR"
     exon            100..193
                     /gene="Ddx47"
                     /inference="alignment:Splign:2.1.0"
     exon            194..382
                     /gene="Ddx47"
                     /inference="alignment:Splign:2.1.0"
     exon            383..454
                     /gene="Ddx47"
                     /inference="alignment:Splign:2.1.0"
     exon            455..573
                     /gene="Ddx47"
                     /inference="alignment:Splign:2.1.0"
     exon            574..645
                     /gene="Ddx47"
                     /inference="alignment:Splign:2.1.0"
     exon            646..762
                     /gene="Ddx47"
                     /inference="alignment:Splign:2.1.0"
     exon            763..909
                     /gene="Ddx47"
                     /inference="alignment:Splign:2.1.0"
     exon            910..1047
                     /gene="Ddx47"
                     /inference="alignment:Splign:2.1.0"
     exon            1048..1118
                     /gene="Ddx47"
                     /inference="alignment:Splign:2.1.0"
     exon            1119..1248
                     /gene="Ddx47"
                     /inference="alignment:Splign:2.1.0"
     exon            1249..1724
                     /gene="Ddx47"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcctcgagca acatggcggc agacgaggaa cccgattccc ccacagaagc ccttcagaca
       61 gctgcagaag aggaggaaac gaaaacattt aaggacctgg gtgtgaccga tgtactgtgt
      121 gaagcttgtg accagttggg gtgggcaaag cccaccaaga tccagattga agctattcct
      181 ttggccttgc aaggtcgtga tattattggg ttggcagaaa cgggatctgg aaaaacaggt
      241 gcttttgctt tgcccattct gaatgcactg ctggagactc cccagcgttt gtttgccctg
      301 gtcctcaccc ctactcgaga gttggccttt cagatctctg aacagttcga ggccctgggg
      361 tcatctattg gagtacagtg tgctgtcatt gttggtggaa ttgattcgat gtctcagtca
      421 ctagcgttgg ccaaaaaacc acatatagta atagctactc ctggccgact gattgaccat
      481 ttggaaaata ccaaaggctt caacttaaga gctcttaagt acttggtcat ggatgaagca
      541 gaccggatac tgaacatgga ttttgagaca gaggttgaca agatcctcaa agtgattccc
      601 cgagatcgga aaacatttct cttttctgct accatgacca agaaggtgca aaaacttcag
      661 cgtgcagctc tcaagaaccc tgtgaagtgc gctgtttcct ctaagtacca gactgttgag
      721 aaactgcagc agtattacct tttcattccc tctaaattca aggacaccta cctggtttat
      781 attctcaatg agctggccgg caactccttc atgatattct gtagcacctg taacaacact
      841 cagagaacag cattgctgct tcgcaatctc gggttcacgg ccatccccct ccatgggcag
      901 atgagtcaga gcaagcgcct tggatccctt aataagttta aagctaaggc gaggtccatt
      961 ctcctagcga ctgatgtggc cagcagaggt ctggacatac cccatgtgga tgtagtagtc
     1021 aattttgaca ttccgactca ttctaaggat tatatccatc gagtaggacg aactgcgaga
     1081 gctgggcgct ctgggaaggc cattaccttt gtaacacagt atgatgtgga actcttccag
     1141 cgcatcgagc acctaattgg gaagaaactg cctgtctttc caacgcagga tgaggaggtc
     1201 atgatgctca cagagcgtgt gagcgaagcc cagagatttg cccgaatgga gttaagggaa
     1261 catggagaaa agaagaaacg caagcgagag gacccaggag atgatgatga taccgagggc
     1321 gctattggtg tgaggaacaa ggtggctggg gggaaaatga agaagcggaa aggccgctaa
     1381 cggctttaga aagacttgtg cttgccagct gtaaagagag gtggaagacg gcagtgagcc
     1441 ccctggagta gagttgagat tctgtccagg atgctcggcc atctgggagc ttgttctctc
     1501 tgaggatcgg agtgtcgttg cagtgggaca tctttcagtg ttgacacagg actgaccgct
     1561 cttcagctgc acctctctcc gccttcccac ctgtaaggcc aggcctggct gtaaggagca
     1621 tcgtctgcag tccactgtga agcttgtaca cagtggctgt cagccacctt atctcagcct
     1681 gatgtacatc aataattact atttttaaag atgtattttt attaaaaaaa aaaaaaaaaa
     1741 aaaaaaa
//
