LOCUS       XM_003750545            2752 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DEAD-box helicase 43 (Ddx43), mRNA.
ACCESSION   XM_003750545
VERSION     XM_003750545.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 1, 2024 this sequence was replaced by
            NM_001427633.1.
            
            On Jan 21, 2021 this sequence version replaced XM_003750545.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2752
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2752
                     /gene="Ddx43"
                     /note="DEAD-box helicase 43; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 8
                     ESTs, 3 Proteins, and 90% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:682138"
                     /db_xref="RGD:1586947"
     CDS             655..2595
                     /gene="Ddx43"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DDX43"
                     /protein_id="XP_003750593.1"
                     /db_xref="GeneID:682138"
                     /db_xref="RGD:1586947"
                     /translation="MSRRESAANASSSGVASRRSSTGSRGAERTATEEGNRRGRVGSR
                     GAGGGWREPAGAAEATAASRREPPLCFGVKNDVVGAVIGRGGSKIREIQNTTNTRIQV
                     IKGNPEAEIKIFGNKAMQTKAKTVIDNVVKKQQNYIPGHRVDIIAFQPTVGTDTSTSE
                     SVTDDQPLIDWDQIREDALKWEKKKWADLPPIKKNFYIESATTSSMSQVQIDNWRKEN
                     FNITCDDLKDGEKRPIPNPICKFEDAFHSYPEVMENIKRAGFQKPTPIQSQAWPIVLQ
                     GIDLIGVAQTGTGKTLSYLMPGFIHLDSQPLAREQRNGPGMLVLTPTRELALQVEAEC
                     SKYSYGDLKSVCVYGGGDRDGQIQDVSKGVDIIIATPGRLNDLQMNNFVNLKSVTYLV
                     LDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSATWPYAVRRLAQSYLKEPMIVYVGT
                     LDLVAVSTVKQNIIITTEEEKRTHIQTFLENMSPKDKVIVFVSRKAVADHLSSDLILR
                     HISVESLHGNREQSDREKALENFKTGKVRILIATDLASRGLDVHDITHVYNYDFPRNI
                     EEYVHRVGRTGRAGRTGMSITLITRNDWRIATELINILERANQNIPEELVLMAERYKA
                     NKLKREMEKKMGRPQGKPQKFY"
ORIGIN      
        1 gacccaatcc tacagttttt cctcagtctc tcctataaca aatacaatgc taagattcta
       61 agtgtcctct gatgagtgat tgacctgcga tctattcaga cagtttgggg atctcaatcc
      121 caacaaggga ttctgtggct tagcccagcc ctgaaggagt gtgtccaact ccagaatctt
      181 tgcaaagctg ggtgtgcttc aggcagtgct catatttttt tttttcactt taggtattgg
      241 ggattgtaaa ttgggtcttc tgctctatac taggtgaacg ctttcatcga gttattttaa
      301 gatagagcct taaataattg tcacacagac cctcctgccc cagatctcaa ttctgtacca
      361 ttaacccgtc atgaacgtga atttcgaggc acggttggga tcctttccgt gcctttgaga
      421 cgcgctgccc tcaggctgga tgttcacaga tggagcaagt ataggtccag gcggccgcgc
      481 ggctgcaagc gccgattggt caggccggcc aggccccgcc cccgagacgc ggcggccaat
      541 gagcgcgccg aggactggcg ggcgagcacg cgggcggcag cggagttttt ccgacgccgc
      601 ggcctgtgca gctgagtccg gaacgaagtg cgacgcgcgg gtctcctcag agccatgtct
      661 aggcgggaat ccgcagccaa cgcttcctcc tcgggcgttg cttcccggag aagctcgacc
      721 gggtcccggg gcgccgaacg gacggcgacg gaggagggga accggagagg ccgggtcggt
      781 agcaggggtg cgggcggcgg ctggagagag cccgcgggtg ccgccgaggc tacggccgcc
      841 agccgccgtg aaccgccgct ctgcttcggg gtgaagaacg atgtggtggg cgcggtgata
      901 ggtcgtggtg ggtcaaaaat tagagaaatc caaaatacaa cgaacactag aatacaggta
      961 ataaaaggaa atcctgaggc agaaataaaa atttttggta ataaagccat gcaaacaaaa
     1021 gcaaaaacag tgatagataa tgttgttaaa aaacaacaaa attacattcc aggacacaga
     1081 gttgatatta ttgcattcca acctactgtt ggaacagata ccagtacaag tgagagtgta
     1141 acggacgacc agccattgat agattgggat caaattcgag aagatgcttt gaaatgggag
     1201 aagaaaaagt gggcagattt acctccaatt aagaaaaact tttatataga gtcagcaacg
     1261 acgagctcaa tgtcacaagt gcagatagac aactggagga aagaaaattt taatataaca
     1321 tgtgatgact taaaagatgg tgagaaacgt cctatcccca accctatatg taaatttgaa
     1381 gatgcctttc acagttaccc agaagttatg gaaaacatta aaagagcagg ctttcaaaaa
     1441 cctacaccaa ttcagtcaca ggcgtggcca atagttctgc aaggaataga tcttattgga
     1501 gtagcacaga ctggaacagg gaagacactg tcctatttaa tgcctggatt tattcatcta
     1561 gactctcaac cactagctag agaacaaaga aatggacccg gcatgttggt ccttacaccc
     1621 actcgggaat tagcccttca agtagaagct gagtgttcta aatattcata tggtgatctt
     1681 aaaagtgttt gtgtatatgg cggtggtgat agagatggac aaattcaaga tgtgtcaaaa
     1741 ggtgtagaca tcattattgc aactcctgga agattgaatg acctacaaat gaataacttt
     1801 gtcaacctga aaagtgtaac ctatttggtt ttagatgaag ccgacaagat gctggacatg
     1861 ggattcgaac cccagataat gaagattttg ttagatgtac gcccagaccg acagactatt
     1921 atgacaagtg cgacttggcc atatgctgtc cgacgtcttg cacaatctta tttgaaagag
     1981 ccaatgattg tctatgttgg tactttggat ctagttgctg taagtacagt gaaacaaaat
     2041 ataatcatta ccacagaaga agagaaacga actcatatcc agaccttcct agagaatatg
     2101 tcacctaaag acaaagtcat tgtctttgtc agcagaaaag ctgttgctga tcacttatca
     2161 agtgatctca ttctccgaca catatcagtg gagtctctgc atggcaacag agaacagagt
     2221 gacagagaga aagcattaga gaactttaag acaggtaaag ttagaatact tattgctact
     2281 gacttggcat ctcgaggtct tgatgtccat gatatcactc acgtctacaa ttacgatttt
     2341 cctcggaaca ttgaagaata tgtacacaga gtagggcgca ctgggagagc agggcgcact
     2401 ggaatgtcca ttacccttat cacaagaaat gattggagga ttgccactga attgattaat
     2461 attctggaaa gagcaaatca gaatatccca gaggaacttg tcttaatggc tgagagatac
     2521 aaggcaaaca aactaaaaag agagatggaa aaaaaaatgg gaagacccca aggaaagccc
     2581 cagaagtttt actaatgctg cgtgtagcac taggtgccac aggattcaag gtggaattgt
     2641 taaagcatac atcaatatga agagacttgg ctgattctta aaataatagt gttcaaaatg
     2701 tagaattcaa tgttttatac tttctttaat aaaacgatag tttttaacct tg
//
