LOCUS       NM_001107824            2688 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus DEAD-box helicase 31 (Ddx31), mRNA.
ACCESSION   NM_001107824 XM_001079220 XM_242296
VERSION     NM_001107824.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2688)
  AUTHORS   Fukawa T, Ono M, Matsuo T, Uehara H, Miki T, Nakamura Y, Kanayama
            HO and Katagiri T.
  TITLE     DDX31 regulates the p53-HDM2 pathway and rRNA gene transcription
            through its interaction with NPM1 in renal cell carcinomas
  JOURNAL   Cancer Res 72 (22), 5867-5877 (2012)
   PUBMED   23019224
REFERENCE   2  (bases 1 to 2688)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 2688)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC160917.1.
            
            On Mar 16, 2008 this sequence version replaced NM_001107824.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC160917.1, SRR8487231.53362.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132291, SAMD00132293
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2688
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p12"
     gene            1..2688
                     /gene="Ddx31"
                     /note="DEAD-box helicase 31"
                     /db_xref="GeneID:311835"
                     /db_xref="RGD:1304895"
     exon            1..213
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     CDS             205..2253
                     /gene="Ddx31"
                     /EC_number="3.6.4.13"
                     /note="DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31;
                     DEAD (Asp-Glu-Ala-Asp) box polypeptide 31"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DDX31"
                     /protein_id="NP_001101294.2"
                     /db_xref="GeneID:311835"
                     /db_xref="RGD:1304895"
                     /translation="MRRQTEATKRKHQVSSDAPPAKRRNEISSLSAKKASNKETQRAF
                     KGSAHKTFPPKKHLDTIGNERQEEKPCVKTSSLFKNNPEIPELHRTVVKQAREQVFSP
                     EAFQELDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCI
                     PVVQSLQALTSKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEK
                     RKSEKARLRKGINILISTPGRLVDHIKSTKNIHFNRVRWLVVDEADRILDLGFEKDVT
                     VILNAVNAECQKRQNVLLSATLTEGVTRLADISLHNPVSISVLDKSWDQPNPKEVASI
                     QLDSFAIPESLDQYVVLVPSKLRLVCLAAFILKKCKFEKDQKMIVFFSSCELVEFHYN
                     LFLHTLLCHSGTPASETLPSASWPLKFLRLHGNMKQEERTSVFHEFSHSGTGVLLCTD
                     VASRGLDLPQVTWIVQYSAPSAPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLA
                     SHKINVSEIKLEGILAVLAKDDCFKRRQRGAQRSHATGPQEIRERATVLQTVFEDYVH
                     SSQRMVSWAKKALQSFIRAYATYPKELKSIFHVRSLHLGHVAKSFGLRDAPRNLGVSA
                     VRKASFKRPDPRRKTQRKHHLVPAEVLHSEHSSGLEGNGPKGRKQGLRVAPSKPGLRR
                     "
     exon            214..470
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            471..546
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            547..590
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            591..661
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            662..726
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            727..771
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            772..813
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            814..878
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            879..998
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            999..1105
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            1106..1314
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            1315..1491
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            1492..1551
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            1552..1602
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            1603..1742
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            1743..1824
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            1825..1936
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            1937..2099
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
     exon            2100..2665
                     /gene="Ddx31"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttgtctccgg ccggtgcctg cagccttggc tcccggaccc ggaaggggcg gcggcggacg
       61 ggcaacagct gcgaagaatc ttactctcca cgtgctgctc gggcctcctg ctcggtctgt
      121 ggctctgagc tcggactttg gctacagcct gaagctctct ccgaccggcc tcccaggacg
      181 tgcttcggac gcacccacac caagatgagg cggcaaacag aggctaccaa gagaaagcac
      241 caagtgtcca gcgatgctcc accagcaaaa cggaggaatg aaatatcctc tctttcagcc
      301 aagaaagcca gcaataaaga aactcagaga gcatttaaag ggagcgcaca caaaacattt
      361 cctccaaaga agcatttgga cactataggc aatgaaaggc aagaggagaa gccgtgtgtt
      421 aagacttcgt cgctgtttaa aaacaatccc gagatcccag aactccacag aacagtagtg
      481 aagcaggctc gagagcaagt gttctctcca gaagctttcc aggagctgga cctccaccca
      541 catctaattt ccacaataaa tacagtttta aaaatgtcca gtatgaccag tgtccagaag
      601 cagagtatcc cagtgctgct ggaaggcaga gatgcccttg tgcgctcgca gacgggctca
      661 ggtaaaactc ttgcctattg catccctgtg gtccagtctc ttcaagcact gacatcaaaa
      721 atacagcgta gtgatggccc ctatgctttg gtcctagtgc ccaccagaga gttggctctg
      781 caaagctttg acactgttca gaagctactt aagccattta cctggattgt tcctggagtg
      841 ttgatgggcg gagagaagag gaaatcagaa aaggccagac tccgcaaagg cataaatatc
      901 cttatctcaa ctcctggccg gttagtggat catataaaat ccacaaagaa cattcacttt
      961 aaccgagtac ggtggctggt tgtggatgaa gcagacagga tcttggattt gggctttgag
     1021 aaggatgtca ccgtgattct gaatgctgta aatgctgagt gtcagaagcg gcagaatgtc
     1081 ctcctgtcag cgacactcac ggaaggtgta actcggctgg ctgatatcag tttgcacaat
     1141 ccagtcagta tctctgtcct ggacaaaagt tgggaccagc ccaatcctaa ggaagttgct
     1201 agtatccagc tggacagctt tgccatacca gagagtctcg accagtatgt ggtgttggtt
     1261 cccagcaagc tgcgccttgt ctgccttgca gccttcatcc tgaagaagtg caagtttgag
     1321 aaggaccaga agatgattgt ctttttctca agttgtgagc tggtagagtt ccactacaac
     1381 ctcttccttc acaccctgct ttgccactcc gggacccctg cttcagagac gctgccatct
     1441 gcctcctggc cactgaaatt ccttcggctg catggcaaca tgaagcagga ggaaagaact
     1501 tctgtgtttc atgagttctc acattctgga actggagtcc tactctgcac agatgttgca
     1561 tctcgaggct tggatctccc acaagtcacc tggattgttc agtacagtgc tccgtctgca
     1621 cctgcagagt acattcaccg cattggaagg actgcccgga tcggctgtca tgggagcagc
     1681 ctgctcattt tggctccttc ggaggcagag tatgtcaact cgttggcttc tcacaaaatc
     1741 aatgtctctg agattaagct ggaaggtatt ttggctgtcc tggcaaagga tgattgtttt
     1801 aaaaggagac aaaggggagc ccagagatcc catgccactg gcccccagga aatccgagag
     1861 cgagccacgg tgttgcagac agtgtttgaa gattatgtgc actccagtca gaggatggtc
     1921 tcctgggcaa agaaagccct gcagtccttc atccgagcct atgccaccta ccccaaggag
     1981 ctgaagtcta tcttccatgt ccggtcccta caccttggcc atgtggctaa gagtttcgga
     2041 ctaagagatg ctcctagaaa cctcggtgtc tctgctgtga gaaaggcaag ctttaaaagg
     2101 cctgaccctc ggaggaagac ccagaggaag caccaccttg tgcctgctga agtcctgcac
     2161 tcggaacact ccagtgggct ggagggcaat ggcccgaagg gcagaaagca aggccttcgg
     2221 gtggcaccca gcaagcctgg gctacggaga taatgaagct gcttttgcat ccagaagctg
     2281 ctgccagcca gcaagcttct ctgggttgtg ttttaatttc tacaggacca ggtcagggtg
     2341 gatccaacat ggcctctcag ctttagattg atgtcctgtt attagtgaag attctgaaaa
     2401 atgactggca cctctccctg aatacagact cacaagagca cagaccctca cctgttggag
     2461 gaggagccct gatgagacca agtaggccgg ggccagtgct aaacagatac ccacctttgg
     2521 ccaggccctg tgagattgca ctcatggaca gcaagcatcc tgtgtgtcag cctggaggag
     2581 tgtagctcct ggcaagcttg ccagattaag cagccacatg tgtattgcat gagtgctgta
     2641 agataaaaga tgttaaaaac aggaaaaaaa aaaaaaaaaa aaaaaaaa
//
