LOCUS       NM_001167665            3085 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus DEAD box helicase 3, Y-linked (Ddx3y), mRNA.
ACCESSION   NM_001167665
VERSION     NM_001167665.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3085)
  AUTHORS   Cortez,D., Marin,R., Toledo-Flores,D., Froidevaux,L., Liechti,A.,
            Waters,P.D., Grutzner,F. and Kaessmann,H.
  TITLE     Origins and functional evolution of Y chromosomes across mammals
  JOURNAL   Nature 508 (7497), 488-493 (2014)
   PUBMED   24759410
REFERENCE   2  (bases 1 to 3085)
  AUTHORS   Pink,C.J., Swaminathan,S.K., Dunham,I., Rogers,J., Ward,A. and
            Hurst,L.D.
  TITLE     Evidence that replication-associated mutation alone does not
            explain between-chromosome differences in substitution rates
  JOURNAL   Genome Biol Evol 1, 13-22 (2009)
   PUBMED   20333173
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000022.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001167665.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FJ775727.1, SRR26360186.2458984.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760386,
                                           SAMEA5760393 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-109               JAXUCZ010000022.1  1210542-1210650     c
            110-167             JAXUCZ010000022.1  1207282-1207339     c
            168-215             JAXUCZ010000022.1  1204041-1204088     c
            216-339             JAXUCZ010000022.1  1201410-1201533     c
            340-495             JAXUCZ010000022.1  1200356-1200511     c
            496-595             JAXUCZ010000022.1  1199833-1199932     c
            596-731             JAXUCZ010000022.1  1197923-1198058     c
            732-817             JAXUCZ010000022.1  1196649-1196734     c
            818-916             JAXUCZ010000022.1  1196124-1196222     c
            917-1077            JAXUCZ010000022.1  1195887-1196047     c
            1078-1222           JAXUCZ010000022.1  1195001-1195145     c
            1223-1367           JAXUCZ010000022.1  1194741-1194885     c
            1368-1549           JAXUCZ010000022.1  1194184-1194365     c
            1550-1667           JAXUCZ010000022.1  1193997-1194114     c
            1668-1821           JAXUCZ010000022.1  1193065-1193218     c
            1822-1952           JAXUCZ010000022.1  1192533-1192663     c
            1953-3085           JAXUCZ010000022.1  1191242-1192374     c
FEATURES             Location/Qualifiers
     source          1..3085
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="Y"
                     /map="Yq11"
     gene            1..3085
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /note="DEAD box helicase 3, Y-linked"
                     /db_xref="GeneID:100312982"
                     /db_xref="RGD:2314437"
     exon            1..109
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
     CDS             74..2032
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /EC_number="3.6.4.13"
                     /note="DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked;
                     DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked"
                     /codon_start=1
                     /product="ATP-dependent RNA helicase DDX3Y"
                     /protein_id="NP_001161137.2"
                     /db_xref="GeneID:100312982"
                     /db_xref="RGD:2314437"
                     /translation="MAAENTVGLDQQFAGLDMNSDNQNGGVSTESKGRYIPPHLRNRE
                     TSKGVCDKDNSGWSKDKDAYSSFGSRDSRGKPNYFSDRGSGSRGRFDDPGRSDYDCIA
                     SRDRSGFGKFERSGYSRWGDKSDEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIP
                     VEATGNNCPPHIENFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQ
                     TGSGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIY
                     EEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFC
                     KYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDE
                     YIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSL
                     ENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVIN
                     FDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQEVPSWLES
                     MAYEHHYKGNSRGRSKSRFSGGFGARDYRQSSGYANSGFNNNRANSSRTSGSTHNRGF
                     GGGGYGGFYSNEGYGGNYNSQAVDWWGN"
     exon            110..167
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
     exon            168..215
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
     exon            216..339
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
     exon            340..495
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
     exon            496..595
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
     exon            596..731
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
     exon            732..817
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
     exon            818..916
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
     exon            917..1077
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
     exon            1078..1222
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
     exon            1223..1367
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
     exon            1368..1549
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
     exon            1550..1667
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
     exon            1668..1821
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
     exon            1822..1952
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
     exon            1953..3085
                     /gene="Ddx3y"
                     /gene_synonym="Ddx3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actgtaagga gtcaggttta cggtggctgc tccgtgaaaa gtaaagttct cgatttttcc
       61 agaaacgagt caaatggcgg cggaaaatac ggttggcctt gaccagcaat ttgctggtct
      121 tgacatgaac tcagataatc agaatggagg agttagtaca gaaagcaaag ggcgctatat
      181 acctcctcac ttaaggaaca gagaaacatc taaaggtgtc tgtgataagg acaattcagg
      241 gtggagtaaa gataaagatg cctacagcag ttttggatct cgggattcca gaggaaaacc
      301 caattatttc agtgatcgtg gaagtggatc cagaggaagg tttgatgatc ctggtcgaag
      361 tgactatgat tgtattgcca gtcgtgaccg aagtggattt ggcaaatttg aacgaagtgg
      421 ttatagtcgt tggggtgaca aatcagatga agatgattgg tcaaaaccac ttccaccaag
      481 tgaacgctta gagcaagaac ttttctctgg aggtaataca gggattaact ttgagaaata
      541 tgatgatata ccagtagagg caactggaaa taattgtcct cctcacattg aaaatttcag
      601 tgatgttgag atgggagaaa ttatcatggg aaacattgaa cttactcgtt acactcgtcc
      661 tactccagtt cagaaacatg ctattccaat tattaaagaa aaaagggact taatggcttg
      721 tgctcaaaca gggtctggaa aaactgctgc atttctactg cccattctca gtcagattta
      781 cacagatggt ccaggagagg ctttgaaggc tatgaaggaa aacggaagat atggtcgccg
      841 taaacaatac ccaatctcct tggtgttagc tccaacaaga gaattggctg tgcagatcta
      901 tgaggaagcc agaaaatttt cgtaccggtc tagagtccga ccttgtgtag tgtatggtgg
      961 tgctgatact gttcaacaga ttcgggactt agaacgagga tgccacttgt tagttgccac
     1021 accaggacgt ctagtggaca tgatggaaag aggaaagatt ggactagatt tctgcaaata
     1081 cttagtgttg gatgaagctg acaggatgct ggatatggga tttgaacctc agatacgtcg
     1141 tatagttgaa caggacacta tgccaccaaa gggagttcgt cacaccatga tgtttagtgc
     1201 tacttttcct aaggagatac agatgcttgc tcgtgacttt ttagatgaat acatctttct
     1261 ggctgtaggc agagtaggct ctacttctga gaacatcaca cagaaagtag tatgggttga
     1321 agagttagac aaacggtcat ttttacttga tctcttaaat gcaacaggga aggattcatt
     1381 gactttagta tttgtggaga ctaaaaaggg tgcagattca ctggagaact tcttatttca
     1441 agaaagatat gcatgtacta gtattcatgg agacagatca cagaaagatc gagaggaggc
     1501 ccttcaccaa ttccgctcag ggaggaagcc aattttagtg gctacagctg tggcagcaag
     1561 aggtctagac atttcaaatg tgaaacatgt tatcaatttt gatttgccaa gtgatattga
     1621 agaatatgtg catcgtattg gccgcacagg acgcgtagga aaccttggtc ttgccacctc
     1681 ttttttcaat gagaggaatt tgaacattac gaaagatttg ttagatctcc tcgttgaggc
     1741 taaacaagaa gtaccatctt ggttggaaag tatggcttat gaacaccact acaagggaaa
     1801 cagccgggga cgttctaaaa gcagattcag tggaggattt ggtgccagag actatcgaca
     1861 gagcagtggt tatgcaaatt ctgggtttaa taataatcgt gccaacagca gccgaactag
     1921 tggtagtacc cacaacagag gatttggtgg aggtggctat ggaggtttct acagcaatga
     1981 aggatatgga ggaaattata actcccaggc agttgactgg tggggcaatt gaatttgtgc
     2041 ctaaatcgtc atttcatata gctaatatgg aaaccacatg taacttagcc agactgtatt
     2101 gtgtagcttc aagaacttgc agtacattac cagctgtgat tcttctaaaa attcatgaga
     2161 gctcaaagtc acaacctgta accctattca aaagttgatg tgaagaatta ttgtagttgg
     2221 attaaatccc ttcctgcttg gttgcaccct aaactgcatt tataatttgt gactgaggat
     2281 catttgttaa tgtactgtga cttttgactt taaacaactt atctgatgtc ctgttcgctc
     2341 aataatgctc aagataccaa ttgttttaat aagttaattg aaccttggca cacaagtgtg
     2401 agacacctta acagaaatca cttaattgct aaatatgatg gtgaaagaat ttaggcataa
     2461 cctgaatagg aaatttttgg tatatgcaga gttggtggta aaactttttt ttttaagttt
     2521 gtaatgtggc agacaataca aagctaaagt tctgaattgc tcactctatc ttggattggc
     2581 acttaaactt tttaaaaaat atgattatat atggttatat cctttatttt tgaaagcact
     2641 aatacagatc actagaatga ttcctcattt actattttaa gtaatttaca ttggcatact
     2701 tctacaggaa aattaaaaaa tttggtgagg aatttaggat ataaagttga gatttattta
     2761 atgcctgcca tacataaaaa tgacatatta atggctgacc atggcagtga ccagaacata
     2821 tcacaatctt gttaattctg gtctttaatg catgctagtg ttggtgtttt ttggtcaaga
     2881 gagtatgaac agaaaggatt atgcagcagc aggcttttat ttttacacag tcacattttt
     2941 ttctgttaaa ctatgtggaa atgtaaaaaa aaaaggctta catacatatt atgtaaatat
     3001 aagaataaca aattgcaatt gctgaggtct cacaggttgg atctatgtac taattataca
     3061 gtgcagtttt catatatttt agttg
//
