LOCUS       NM_001108898            1931 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus DEAD-box helicase 28 (Ddx28), mRNA.
ACCESSION   NM_001108898 XM_001076081 XM_344762
VERSION     NM_001108898.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1931)
  AUTHORS   Antonicka H and Shoubridge EA.
  TITLE     Mitochondrial RNA Granules Are Centers for Posttranscriptional RNA
            Processing and Ribosome Biogenesis
  JOURNAL   Cell Rep 10 (6), 920-932 (2015)
   PUBMED   25683715
REFERENCE   2  (bases 1 to 1931)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 1931)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 1931)
  AUTHORS   Bogenhagen DF, Rousseau D and Burke S.
  TITLE     The layered structure of human mitochondrial DNA nucleoids
  JOURNAL   J Biol Chem 283 (6), 3665-3675 (2008)
   PUBMED   18063578
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473972.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001076081.1, XM_344762.3.
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1931
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..1931
                     /gene="Ddx28"
                     /note="DEAD-box helicase 28"
                     /db_xref="GeneID:364995"
                     /db_xref="RGD:1311976"
     exon            1..1931
                     /gene="Ddx28"
                     /inference="alignment:Splign:2.1.0"
     CDS             11..1633
                     /gene="Ddx28"
                     /EC_number="3.6.4.13"
                     /note="DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DDX28"
                     /protein_id="NP_001102368.1"
                     /db_xref="GeneID:364995"
                     /db_xref="RGD:1311976"
                     /translation="MALAGPTRLLSLAVRLLLEPRRNIVLRGSDQSLPVVRIPRALQR
                     RQEQRRSDRGSFQRPVLVQPGPLLVSAKRPELNQPARLTLGRWERAPLASRGWKHRRS
                     RQDHFSIERVQQEAPAMRNLSSRGNFVDLGLEPRVLLALQKAVPEIVQPTSVQSKTIP
                     PLLRGRHILCAAETGSGKTLSYLLPLFQRLLKGPELDSRSSTAPRGLVLVPSRELAEQ
                     VQAVAQSLGRYLDLQVIELGGGLGMNRLKLQLGKWPSADVLVATPGALWKALKSQLIS
                     LHHLNFIVLDEVDTLLDESFVELVDYILGKSPIAESPAELEDPFNPKAQLVMVGATFP
                     EGLNQLLSKVTSPDSLTTITSSKLHCIMPHVRQTFMRLKGTEKVTELIQILKQHDKAN
                     KAEPSGTVLVFCNSASTVNWLGYILDDHKIQHLRLQGQMPASMRAGIFQSFQKGSQNI
                     LVCTDIASRGLDSIHVEMVVNYDFPPTLQDYIHRAGRVGRVGSEVPGTVTSFVTHPWD
                     VSLVQKIELAARRRRSLPGLTSSVRDPLPQQD"
ORIGIN      
        1 caagagaaat atggctttag ccgggccaac gcggctatta tcattagcag tccggttgct
       61 tctggaacct cgacggaaca tagtgttgcg cggttccgac cagtccttgc ctgttgtgcg
      121 cattccgcgg gctctgcagc gacggcagga acagcgacgg agcgaccgtg ggagtttcca
      181 acggccggtg ctagtgcaac ctggtccact cctggtctcg gcaaagcggc cagagttgaa
      241 ccagcccgca cgcctcacgc tgggccgttg ggagcgggca ccactggctt cgcgtggctg
      301 gaagcatcgg cgatcgcgtc aggaccattt ttccatagag cgagtgcagc aagaggcgcc
      361 cgccatgagg aacctctcgt cccggggcaa cttcgtggac ctgggtctag aaccccgagt
      421 actgctcgcg cttcagaagg ctgtccccga aattgttcag ccaacctccg tgcagtcgaa
      481 aaccattccc ccactgcttc gcggccgcca catcctttgc gctgctgaaa ccggtagcgg
      541 caagacgctt agctatctac tgcccctatt tcaacggctc ctaaaagggc cagagctgga
      601 ctcccgcagt tccaccgctc ctcgaggctt ggttctggta ccttcccgag aattagccga
      661 acaggtgcag gcagtggccc agtcattggg taggtacttg gacctgcagg ttatagaact
      721 tggcggaggc ctgggaatga ataggctcaa acttcagctg ggtaaatggc cgtcagcaga
      781 tgtgctagtg gctactccag gggcgctgtg gaaggctctg aaaagtcaac tgatcagctt
      841 acatcatctt aacttcatag tgctggatga agtagacacg ctgctagatg aaagcttcgt
      901 ggaactggtg gactacatct tgggaaagag ccctatagca gaaagtccag ctgagttaga
      961 agaccccttt aatcccaaag ctcagttagt gatggtggga gccacatttc cagaaggcct
     1021 aaaccaattg ctgagtaaag tcaccagccc agacagtctg accaccatca ccagctccaa
     1081 gctccactgc atcatgcctc atgtcagaca gacatttatg agactaaagg gaacagagaa
     1141 ggtgacagaa ctgattcaga tcctcaaaca gcatgacaaa gcaaataagg cagaaccctc
     1201 gggaactgtc ctggtattct gcaacagcgc cagcaccgtg aactggcttg ggtacattct
     1261 ggatgaccac aaaatccaac atttaaggct gcaagggcaa atgccagcct caatgagggc
     1321 aggtatcttc cagagtttcc agaagggctc ccaaaacata cttgtctgca cagacattgc
     1381 ctcacgaggc ctagacagca tccacgtgga aatggttgtc aattatgatt ttccccctac
     1441 tctgcaggat tacatccaca gagcaggaag ggtgggtcga gtgggcagtg aagtgccggg
     1501 gactgttacc agttttgtga cccatccctg ggatgtgagc ctggttcaga aaattgaact
     1561 ggcagctcgt agaaggagaa gccttccagg actaacatct tcagtgaggg acccattgcc
     1621 tcaacaagac tgactttttt ggctgactta aacctacaat agagcaggga tcttcttgga
     1681 ggtccaggaa agttgaacac ttgtcttttg atgacattgg gtcataccag cccctcgcct
     1741 ctctgcagta taatgaattg tttcgagatc tgaaaaataa actactagac aggaatggag
     1801 agtaacattc aaacaataaa gtggggggtt ggggatttag ctcagtggta gagcgcttgc
     1861 ctagcaagtg caaggccctg ggttcagtcc ccagctccga aaaaataaaa aataaagtgg
     1921 atgttgactt t
//
