LOCUS       NM_001005895            6462 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus DEAD-box helicase 19B (Ddx19b), mRNA.
ACCESSION   NM_001005895 XM_001075251 XM_002725392
VERSION     NM_001005895.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6462)
  AUTHORS   Natalizio,B.J. and Wente,S.R.
  TITLE     Postage for the messenger: designating routes for nuclear mRNA
            export
  JOURNAL   Trends Cell Biol 23 (8), 365-373 (2013)
   PUBMED   23583578
  REMARK    Review article
REFERENCE   2  (bases 1 to 6462)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   3  (bases 1 to 6462)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   4  (bases 1 to 6462)
  AUTHORS   Ishii,H., Vecchione,A., Furukawa,Y., Croce,C.M., Huebner,K. and
            Fong,L.Y.
  TITLE     Differentially expressed genes execute zinc-induced apoptosis in
            precancerous esophageal epithelium of zinc-deficient rats
  JOURNAL   Oncogene 23 (49), 8040-8048 (2004)
   PUBMED   15361827
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Apr 27, 2023 this sequence version replaced NM_001005895.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643294.59453.1,
                                           SRR26360186.403943.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-180               JAXUCZ010000019.1  55903131-55903310   c
            181-229             JAXUCZ010000019.1  55899656-55899704   c
            230-283             JAXUCZ010000019.1  55898362-55898415   c
            284-419             JAXUCZ010000019.1  55896953-55897088   c
            420-512             JAXUCZ010000019.1  55896644-55896736   c
            513-615             JAXUCZ010000019.1  55892448-55892550   c
            616-730             JAXUCZ010000019.1  55889012-55889126   c
            731-908             JAXUCZ010000019.1  55886482-55886659   c
            909-1146            JAXUCZ010000019.1  55885921-55886158   c
            1147-1309           JAXUCZ010000019.1  55883426-55883588   c
            1310-1501           JAXUCZ010000019.1  55882879-55883070   c
            1502-6462           JAXUCZ010000019.1  55877567-55882527   c
FEATURES             Location/Qualifiers
     source          1..6462
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..6462
                     /gene="Ddx19b"
                     /gene_synonym="Zd10a"
                     /note="DEAD-box helicase 19B"
                     /db_xref="GeneID:690693"
                     /db_xref="RGD:1593382"
     exon            1..180
                     /gene="Ddx19b"
                     /gene_synonym="Zd10a"
                     /inference="alignment:Splign:2.1.0"
     CDS             124..1563
                     /gene="Ddx19b"
                     /gene_synonym="Zd10a"
                     /EC_number="3.6.4.13"
                     /note="zinc responsive protein Zd10A; DEAD
                     (Asp-Glu-Ala-As) box polypeptide 19B; DEAD
                     (Asp-Glu-Ala-Asp) box polypeptide 19B; zinc responsive
                     protein ZD10B"
                     /codon_start=1
                     /product="ATP-dependent RNA helicase DDX19B"
                     /protein_id="NP_001005895.3"
                     /db_xref="GeneID:690693"
                     /db_xref="RGD:1593382"
                     /translation="MATDSWALAVDEQEAAAESLSNLHLKEEKIKPDANGAVVKTSAN
                     TEKTEEDEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPSSPLYSVKSFEELRLKPQ
                     LLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN
                     NHPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKVGEQIVIGTP
                     GTVLDWCSKMKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT
                     FEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEKFQALCNLYGAITIA
                     QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV
                     CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMN
                     ILNRIQEHFNKKIERLDTDDLDEIEKIAN"
     exon            181..229
                     /gene="Ddx19b"
                     /gene_synonym="Zd10a"
                     /inference="alignment:Splign:2.1.0"
     exon            230..283
                     /gene="Ddx19b"
                     /gene_synonym="Zd10a"
                     /inference="alignment:Splign:2.1.0"
     exon            284..419
                     /gene="Ddx19b"
                     /gene_synonym="Zd10a"
                     /inference="alignment:Splign:2.1.0"
     exon            420..512
                     /gene="Ddx19b"
                     /gene_synonym="Zd10a"
                     /inference="alignment:Splign:2.1.0"
     exon            513..615
                     /gene="Ddx19b"
                     /gene_synonym="Zd10a"
                     /inference="alignment:Splign:2.1.0"
     exon            616..730
                     /gene="Ddx19b"
                     /gene_synonym="Zd10a"
                     /inference="alignment:Splign:2.1.0"
     exon            731..908
                     /gene="Ddx19b"
                     /gene_synonym="Zd10a"
                     /inference="alignment:Splign:2.1.0"
     exon            909..1146
                     /gene="Ddx19b"
                     /gene_synonym="Zd10a"
                     /inference="alignment:Splign:2.1.0"
     exon            1147..1309
                     /gene="Ddx19b"
                     /gene_synonym="Zd10a"
                     /inference="alignment:Splign:2.1.0"
     exon            1310..1501
                     /gene="Ddx19b"
                     /gene_synonym="Zd10a"
                     /inference="alignment:Splign:2.1.0"
     exon            1502..6462
                     /gene="Ddx19b"
                     /gene_synonym="Zd10a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttctgagcg gcggtgaatg atttcccccg gggcggtgct ggacctctct gacacccacc
       61 tgagtccgcg gttgcaccgc ccaagcgggc aaacctgcca gcgctgcccg ggcactgggg
      121 accatggcca cggattcttg ggccctagca gtggacgagc aggaagccgc cgctgagtcg
      181 ttgagcaact tgcatcttaa agaggagaaa atcaaaccag atgccaatgg tgctgttgtt
      241 aagaccagtg ctaacacaga gaagacagag gaagatgaga aagaggacag agctgctcag
      301 tctttactca acaagctgat cagaagcaat cttgtggata acaccaacca agtggaagtc
      361 ctgcagaggg acccgagctc cccgctctac tcagtgaagt ccttcgagga gcttcgcctg
      421 aaaccacagc ttctccaggg agtctatgcc atgggtttca accgcccttc caagatccag
      481 gagaatgcac tgcctttgat gcttgctgag cccccacaga acttaattgc ccagtctcag
      541 tctggtactg ggaaaacagc tgccttcgtg ttggccatgc tcagccaagt agagcctgca
      601 aacaaccatc cccagtgtct ctgcctctct ccaacctatg agctggctct tcaaacagga
      661 aaagtgattg agcagatggg caagttttac cctgaactga agttagctta tgctgttcga
      721 ggcaataaat tggaaagagg tcagaaggtc ggtgagcaga ttgtcatcgg tacccctggg
      781 accgtcctgg actggtgctc caaaatgaag ttcattgacc ccaagaagat caaggtgttt
      841 gttctggacg aggctgatgt gatgatagcg actcagggcc accaagacca gagcatccgc
      901 atccagagga tgctgcccag aaactgccag atgctgcttt tctctgccac ctttgaagac
      961 tcagtgtgga agtttgccca gaaggtggtc ccagacccca acatcatcaa gctgaagcgt
     1021 gaagaggaga cgttggacac catcaaacag tattatgtcc tttgcaataa cagagaggag
     1081 aagttccagg ccctgtgcaa cttgtacggg gccatcacca tcgcccaagc catgatcttc
     1141 tgccataccc gcaaaacagc tagctggctg gcggcagagc tctccaaaga gggccaccag
     1201 gtggccctgc tgagtggaga gatgatggtg gagcagaggg ctgctgtgat cgagcgcttc
     1261 agagaaggca aagagaaggt tctggtgacc accaacgtgt gtgcccgtgg tattgatgtt
     1321 gaacaagtgt ctgtggtcat caattttgac cttcctgtgg acaaggacgg gaacccagac
     1381 aatgagacct acctgcaccg cattgggcgc acaggccgct ttggcaagag gggcctggca
     1441 gtaaacatgg ttgacagcaa gcacagcatg aatatcctca acagaatcca ggagcatttc
     1501 aataagaaga tagaaagatt ggacacagat gacttggacg agatcgagaa aatagccaac
     1561 tgagaagctt ctccatgggc tggcgccacc ctcagcactc cctgcctggg actccagtgc
     1621 ttttatggca taggccttga caggcacctc aaagaccaag gtctgagtag agactaccta
     1681 cctcattcgg aattacgttt ggacttgaca gaaatttgtg caaatgatga gggatggtag
     1741 aaaatttgtt tacacaactt tggaagatta ggcatgaatg aatacacaga aatttacctt
     1801 ttacaagtcc cgtctttttt tttttttttt ttggacagaa cttccccatc tttacactaa
     1861 tctagacaat accccaagga ttccttatga cagaacttag ctgagtatga cttggagtgt
     1921 tcaggccagg cgtgtgcaag tagccacaca gtagtacaag aaaggcagag tccccaggta
     1981 ggagaaggat gtgtcaggag ggtagcacga ggtagttgtc ctgtggactg ctgtgtagga
     2041 cctggtgtgc agtggctgag ctggatggat ggtgccagac cccgctgaca ctctttctag
     2101 gaaacgactt gtatgctgga ccaaatgcct ttgggtcccc ctgtctctct attgagcttt
     2161 gtgcctcagg aatgtgatgt tctttccagc aggcagcagt catgtgctgt gcaaatctgg
     2221 tattgtgagt tctcggctca tacttcagca agacctgtgg ggcagttgtc agaggattag
     2281 tggtaccttg gcttacacct agttcatggg gacttgaacc attgttttta catctgtaac
     2341 atcactttga gtgttagttg tcccaggcaa ataaaagggt acctgagatc tggattttaa
     2401 gtgagtacta tagcttcaag tttctgatgg gcaagcagtc ttgatctgag cagttgccaa
     2461 aaatccttgc tttgtcggtg gttcccaaag actagtccta tcagggctag gggtgattac
     2521 agacattgag cattgtgagt ctgcagggat tctcatggtc tgtgttcaca gtgcctggaa
     2581 tgaatacaag tgagtgagat gaagggcaga tggaccacaa ccatttgtct gtccaagaca
     2641 gagtaatcgc catgcgtttg ctccttcctc ccttagcacc tgtcagtaga atagtaaagc
     2701 aaacaatagg aacagaattt gtcacagtta ggtcatagat accctgagtg acgcaaacgg
     2761 aaagatcgag aggcatcctc tcatggggtg agtcctctct ctagcgcctg ttttgttttg
     2821 ttgcatgtat gtgtttgctg ggactcaaag ccagagccct gtggtctgta atgtaagcac
     2881 gttacactta accattattc ccagccatgg tagaagaatt ttgtgatgag aggtattgat
     2941 cctagatctt cttatctgtg ttcatgtatc ttaaggccag ctctgtcacc tgggaaagga
     3001 gagtgccatg gctaccgcct ggggctaccg ctcagtgtca cagagaaacc aacagcctgc
     3061 cagttctcta ctttctccag tgggtatttg aatagaattc tctgtgtgct tttggccaac
     3121 tttgatctat cttaggagtc ttaaaaggag agaataaact ttttctctta aaatactgtg
     3181 gaccaaactt gagataactg aaaacaagga ctgtagttgg agaagtgtga gactcttccc
     3241 tgagtctgag aaggagaatg gggaaggaga gcagcagcct ctccagtggc ttctggtgga
     3301 aatgtagatc ggcctcctaa cctagagtcc tgctcctcca agaatcaact ggatgggttt
     3361 catggtgtct gtggggattc attggtttaa ggttaaaaac taattggaaa gactcccaaa
     3421 agactatcca ccttttaaaa aggtgaggcc tacattgtgg atggctctgg aagtcacttg
     3481 tgtcatgtgg accatattcc ttcacagccc acactcactc ctgccaccac ctgtccccca
     3541 gggcgaggtt agtactgtta ggagccttca gaatgtattg agcttgcaga gccttggtac
     3601 cagggattag actgatgtca ataaagttat gtatctagga aatgataaac cgagccctca
     3661 gagacaggag ctcagggaaa ggagagaaag aagctcaggg aaaggaattt tttgtctaat
     3721 gaaaagtttt gtaacattca ttatccacaa acagatctta atggattttt actctttgac
     3781 ctcaaactta aattcctgcc tcagtttctt gagtgttaga attataggtg tgtactatca
     3841 tgccagactg aggtattttg ttctcagagt atcatttatt ggttggttgc ataagatctg
     3901 atcaattgtt gagacatagt cttttgggag tttagggttt ttgtttgttt ggattttttt
     3961 ttttttttgg ttcttttttt tcggagctgg ggaccgaacc cagggccttg cgcttcctag
     4021 gcaagcgctc taccactgag ctaaatcccc agcccctgtt tggatttttt gagacagggt
     4081 ttctctgtgt atcccttgct gccctggaat ttgctctgta gtagaccagg ctggctttga
     4141 actccaggat ccacctgcct ctgactcctg agtgctggga ttaaaggtgt gcacttccac
     4201 atcctgcaag atacagtttt tcctggtgtt aattatgaat tattcatgtt actaagacag
     4261 gaatgattgt aagaaggaag cagcattttg tggttgttgg tgtattaagt agttgacatt
     4321 gcctcaggct agtatcagtc gtttagttgg tactgttcta gcacgagcaa ccagggctct
     4381 ctacagacca ggattctgtt cactcgccag aggaactcac acacacacct caccccactt
     4441 tagtaaaaca ggatgatgtt ggtcactgcc tataaagtca gtctatggat gcatcttcca
     4501 ggagtgatgg tatataccag tcaggcccag cattagcaag catgatagtc cgtatctgta
     4561 aatcccagca ttagcaaagc tgaggctaga gggattggag tttaaagtaa gcctaggcta
     4621 cataggtcct gtctcaaaaa acaaaacaaa acaaaaaata gtctgagcat ggtgcttcat
     4681 gcccataatc ctggcatttg tgatctgaaa gcaggaagtt caggagttca gagctaacct
     4741 aggctccaag aagctggctc agggcattcc acctggaggc tgaggcagaa ttgctgagtt
     4801 caaagccagc ctgggttact tagaaatagg ccagccttag ctctgtacac tgagtcaagt
     4861 tgacaagggt ggaagagaga ttctgggaaa acagagctca ggtggccatg agtgggagag
     4921 aaaagtcagg gtcacaggat aaaatgctgc agctgtttta gtttttgttt gggatagggt
     4981 ctcagtgttc aacacaggct ggcctggaaa tcaaagcaat tctacctcag cctcctgagt
     5041 gctgggattc taggcaggag ccatcaagac ctggtgacta aattttggct gcatcatagt
     5101 ccagtgtcct gctgtgacag actagccagg gctgggcagt ctgaggacag gtgagcatgc
     5161 gggcgtggag gcggagacgt caacatcagc attagcagca ggatgaggaa ttctgaaatc
     5221 agtgtagcaa aactggcttt ctgttgttgg aggggggaac tggactgcct gcctcctttg
     5281 cccacactca ggtaatgact gtttctcttg gtcctcatta gagacaccag attcttgagg
     5341 actccttgca agtttacatg gctttgcttc tctatgagaa taaatacctg tgttctgttg
     5401 cctggctgtt aaggtgtctt ctataaagga ccctggggca tgaaattaac ccaagaaact
     5461 tacgctgagg cacttacacc gcttttcttg tccttagctg agatagaact ttcccagaac
     5521 aacttgaaac cccgtgtgaa gatgcagact catgcttgtc ttggcttcca gactgtcttg
     5581 gctttagaat ccgaaggggc agggaggcgg ctgctctgtc atagtttcag tcatgaagtg
     5641 gggaatgact agaaggtgga ggaaggtatg gtggccctgc agatgtcatc ttaacacttg
     5701 cagggctgat ggttgaaacg tttgagtact gctagggcta cagagatctg gactgtgtcg
     5761 tgagatcatg atcaggttag gtcaagcttt acagtgatgc ctgacatgcc cgctgtccat
     5821 gaaccatgtc tcccctctgt cttagctaca gttaatgggc agagagagac aagggtgaga
     5881 gagcagacct tctgtgtctt tttgagccca gaattgtggc tagcttttgc caagggaaga
     5941 aataggtttc cctagaagac tactgttgtt caatgtgttt tccccattcc agttcttcaa
     6001 cctaaaagca gcctactgag tgtaggttgt tgtaattatt ccctgagggc aagcctccct
     6061 ccccattcac acttgaagga acaagtcagg ttatgtggct aagtaagcct gtcacacttg
     6121 aaggaacaag tcaggttatg tggctaagta agcctgtcac acttgaagga acaagtcagg
     6181 ttatgtggct aagtaagcct ggttttttgg gttttggttt tatgtgtgtg tgtgttcagc
     6241 tcattttgct atctgacagc agtggctgct gaatatgcgt agaaattatc aagctgtggc
     6301 tagtgcatga ctctggttat tactgatcca ggtcctaaag gtcagagggc actggctgcc
     6361 tcagggagtt gtcattagtg gggcactggt gcctagcctc tcactaattt tattttttaa
     6421 gacttgctca tctttttaaa taaatatatt tttaaaattg tg
//
