LOCUS       XM_039084765            4452 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DEAD/H-box helicase 11 (Ddx11),
            transcript variant X2, mRNA.
ACCESSION   XM_039084765
VERSION     XM_039084765.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4452
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4452
                     /gene="Ddx11"
                     /note="DEAD/H-box helicase 11; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 10
                     ESTs, 1 long SRA read, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:316767"
                     /db_xref="RGD:1306675"
     CDS             393..3068
                     /gene="Ddx11"
                     /codon_start=1
                     /product="ATP-dependent DNA helicase DDX11 isoform X2"
                     /protein_id="XP_038940693.1"
                     /db_xref="GeneID:316767"
                     /db_xref="RGD:1306675"
                     /translation="MAEESQEMGGIHFPFPFPPYPIQKDFMAELYKVLEAGKIGIFES
                     PTGTGKSLSLICGALSWLRDFEQKKLQAEAGLLAPASGPTSSGRNSVLSSSSCQEPSD
                     TLRPAGDPDWVTEFVQKKEERDLVERLREEQLRRRKREERLQEVCQDGRRRFAAKRSR
                     QEEEETETLLRLSREMLAADTAPEQLGQLECGEEHLVLAEYESDEERRGSRADEGEDD
                     LEEEHITKIYYCSRTHSQLAQFVREVQKSPFGKETRLVSLGSRQSLCVNEDVKSLGSV
                     HLMNDRCVDMQRRKHKKMRIGEDKPKRRRQKMQASCPFYNHEQMELLRDEILLEVKDM
                     EQLVALGKEAQACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRLQGQVVIIDEA
                     HNLIDTITNIHSTEVNGSQLCQAHSQLLQYMERYRKRLKAKNLMYIKQILYLLDKFVA
                     VLGGSELQSINDFLFQSQVDNINLFKVQRYLEKSMLSRKLFGFTECFGVVLPSLSDSE
                     ENRGLGGFQQFLKSLQSGPPEDSLEEGQAVALRPASPLMHIEAFLEALTTANQDGRVI
                     VNRQGSVGQSSLKFLLLNPAVHFAQVVKECRALVIAGGTMQPVSDFREQLLACSGVEA
                     SRVVEFSCGHVIPPDNILPLIICSGPSNQQLEFTYQRRELPQMMEETGRILCNLCNVV
                     PGGMVCFLPSYEYLRQVHAHWDKTGLLARLSVRKKIFQEPKRASQVEQVLTAYSTCIA
                     SCSHSEGHLTGALLLSVVGGKMSEGINFSDDLGRCVVMVGMPYPNIKSPELQEKMAYL
                     DQTIPRTHGQPPPGTVLIENLCMKAINQSIGRAIRHQKDFASIVLLDHRYARPSILAK
                     LPAWIRDRVEVKATFGPAFAAMRKFHREKSHPCLG"
ORIGIN      
        1 tctttgggca ggcagatgta tatgtagcag agcactcata cattaagtaa ataaaagttt
       61 ttttaaaaag ctcgatatct ctgtgaaaac aaaaccccga taaatggtaa tagtaaaatc
      121 ctaatacgaa gagttagatc aaggttcaag cacagagcca taaccaaaac aacttgaacc
      181 tcaaagcccc ggatgagctg gagtgcgcag gcgcagtgac gggggcgtgg ccaagtggcg
      241 ggcttttctg tttgcgcatg ctccttctgt gaagcttcaa attttatggc ggctaccggg
      301 cttacttgcg ggcctcaggg agtccgccct gaagatgaga gcgaattcgg ccctgcctga
      361 gtgaagcgct gacaccgaag acagagaggg caatggctga agaaagccag gagatgggtg
      421 gcatccattt tccgtttccc ttccccccct atcctatcca gaaagacttc atggcagaac
      481 tctacaaggt tttggaggct ggcaagattg ggatatttga gagtccaact ggcacgggaa
      541 agtccttaag tctgatttgt ggggccctct cctggctccg ggactttgaa cagaagaaat
      601 tgcaagcaga ggctggtctc ctcgctcctg catctggccc cacaagtagt gggaggaact
      661 cagtcctgtc ttcctcatcc tgccaagaac cctctgacac cctgagacct gctggagatc
      721 ctgactgggt cactgaattt gtgcagaaga aagaagaaag ggacctggtg gagaggctga
      781 gggaggagca gctgaggagg aggaagcgag aggagcggct gcaggaggtc tgccaggatg
      841 gaagacgcag gtttgctgcc aagcgctcga gacaggagga agaggagacc gagactctcc
      901 tgcgcctcag cagggagatg cttgctgcag acacagcacc agagcagctg gggcagctgg
      961 agtgtgggga ggagcatctg gttctggcag aatatgagag tgatgaggag agaagaggca
     1021 gcagggcgga tgagggtgag gatgacttgg aggaagaaca tataaccaag atttattact
     1081 gcagtcggac acactcacag ctggcccagt ttgtgcgtga ggtgcagaag agcccttttg
     1141 gcaaggagac gcggctagtt tcccttgggt ctaggcagag cctttgtgtg aatgaagatg
     1201 tgaaaagcct gggttctgtg cacctcatga atgaccgctg tgtggacatg caaagacgca
     1261 aacacaagaa gatgagaatt ggggaagaca agccaaagag aaggagacag aagatgcagg
     1321 cctcctgccc cttctacaac catgagcaga tggagcttct ccgggatgag attctgctgg
     1381 aggtgaagga catggagcag ctcgtggccc tcgggaagga ggcccaggcc tgcccctatt
     1441 atggaagccg ctttgccatc cctgcagccc agctggtggt gctgccctac ccaatgctgc
     1501 tgcacgcagc cacccggcag gctgcgggaa tcaggctgca agggcaggtg gtcattattg
     1561 acgaggctca caacctgatc gacaccatca ccaatatcca cagcacagag gtcaatggtt
     1621 cccagctctg ccaggcccat tcccagttgc tccagtacat ggaaagatac aggaagcgtt
     1681 taaaggccaa gaacctgatg tacatcaagc agatcctgta cttgctggac aagtttgtgg
     1741 ctgttttggg agggtctgag ctgcagagca tcaacgactt tctctttcag agccaggtgg
     1801 acaacatcaa cctcttcaag gttcagcggt acctggagaa gagcatgctc agcaggaagc
     1861 tctttggctt cacagaatgc tttggagttg ttcttccatc cctctcagac tctgaggaga
     1921 accgaggtct gggtggcttc cagcagttcc tgaagagcct gcagtcaggg cctcctgagg
     1981 actccctgga ggagggccag gctgtagccc tgcggcctgc ctccccactg atgcacattg
     2041 aggccttttt agaagctctc accacagcca accaggatgg cagggtgatc gtgaaccgcc
     2101 aaggcagtgt tggtcagagc agccttaagt tcttactctt gaacccagct gtgcactttg
     2161 cccaggtggt gaaggaatgc cgagccctgg tcattgctgg tggcaccatg cagccggtgt
     2221 ctgactttcg ggagcagctg ctggcgtgtt ctggggtaga agcttcgaga gtggttgagt
     2281 tctcctgtgg tcacgtgatc cctccagaca acatcttgcc ccttatcata tgcagtgggc
     2341 cctctaacca acagctggaa ttcacctacc agagaagaga gctgcctcag atgatggagg
     2401 agacgggccg cattctctgt aacttgtgca acgtggtccc tggagggatg gtgtgcttcc
     2461 ttccttccta cgagtacctg cgccaggtac atgctcactg ggacaagact ggcctgctgg
     2521 cacgtttgtc tgtcaggaaa aagatctttc aagagcccaa gagagcgagc caggtggagc
     2581 aggtgctgac ggcgtattcc acgtgcattg cgagctgcag tcactcagaa ggccatctga
     2641 caggggccct tctcctctct gtggttggag ggaagatgag tgaagggatc aacttctcgg
     2701 acgacctggg ccggtgtgtg gtgatggtgg ggatgccgta ccccaacatt aagtctccag
     2761 agctacaaga gaagatggcc tacttggatc agaccattcc taggacacat ggtcagcccc
     2821 cgccagggac ggtattgata gagaatctgt gtatgaaggc tataaaccaa tccataggca
     2881 gggccatcag gcaccagaag gactttgcca gcattgtgct cctggatcac cggtatgccc
     2941 ggccctccat cctggccaag ttgcctgcct ggatacgaga ccgagtggaa gtcaaagcca
     3001 cctttgggcc tgcttttgct gctatgcgga agttccatcg agaaaagtca cacccatgtc
     3061 tagggtaagc ttgtgtttat tttctgtgct tgacccggcc ttcgtatatg gcctaagaag
     3121 gtgcaaacca tatgcagact gctgtgtgca ccagccttca gaggccgtgc cctccagtgt
     3181 ttggactcac atagagaagc cacaaggaca gagccagaac atcctgaaga caccacgttc
     3241 ccggagacaa gagtctcact gtagcacctg gctcaggttc agctctctgc cttttctgag
     3301 gtgaggcccg cctgcctctg acccacgcca tttaagcttt ccttggcctt ggactcccat
     3361 ctcagacaca gatgtcctgt ttcaagcttt attgcctggc ccagaattgt acacacatca
     3421 tctgtccaga agagaatttg agaaaacaat ggggacatac ttaatattga aagagctgac
     3481 ataaactgat ttttctgaag gacccttcac aaagacttgg accctggtca tatacttctc
     3541 tataccccat aaagaaagaa gcattgatcc tatccacagc tcctcaggcc tctgtgctca
     3601 gaacaacgtt cccctgtaag acatgtcatg gggcaaaagg gtctccatgt ttttcatttt
     3661 cttctgttgt tccctgaaca tgaacagctc cttcatgttc agcagtggct gtcccttata
     3721 tgaccttcgg gaaactcagg agccatatgc ccttggcatt taggcaacac cctgggctgc
     3781 aaactgagag gaggcaagag gaggcagagg agagagtgca ggcttgtctt tcaatggtgc
     3841 ttgtaccgct tgcagctcaa aggggttcga tccttgaatc ctccccagat tgaagtgccc
     3901 tcacacctgg gggatgtttt gagacagaca gaccttcaca gggagacacg ttaagatttt
     3961 gtcactagcg caggacttta gcatgcactg aaatgcagct agaaatccaa gttctaaaag
     4021 gacccagaga atgacagcct ctgtaaacct tgaaggattg tcactgggaa tctactcatc
     4081 tgttacctgc tttctgaaat ggcaatgttc ccagggttat atcataggaa tatcatccag
     4141 gtatcatgcc caattaaaac attgattgaa ttttgtgatc aagtatgaga attttcctaa
     4201 atgcaattga tatcatgata atagatattt gtctagagac agcgtgcagt gtgagctatg
     4261 taaaagcatt ggggagatgc agtgggagga ataattgatc caggtcatca aaggcggcag
     4321 caggctgcag aatgaagaga cccagagacc tcatttgttg tgtgacctcc atcaagccac
     4381 ttagagacct ccacacctta atgtgttatt cacttattaa aatgtttgtt ccatttccct
     4441 tataacctga aa
//
