LOCUS       XM_039084764            4496 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DEAD/H-box helicase 11 (Ddx11),
            transcript variant X1, mRNA.
ACCESSION   XM_039084764
VERSION     XM_039084764.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 31, 2024 this sequence was replaced by
            NM_001427601.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4496
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4496
                     /gene="Ddx11"
                     /note="DEAD/H-box helicase 11; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 10
                     ESTs, 1 long SRA read, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     20 samples with support for all annotated introns"
                     /db_xref="GeneID:316767"
                     /db_xref="RGD:1306675"
     CDS             392..3112
                     /gene="Ddx11"
                     /codon_start=1
                     /product="ATP-dependent DNA helicase DDX11 isoform X1"
                     /protein_id="XP_038940692.1"
                     /db_xref="GeneID:316767"
                     /db_xref="RGD:1306675"
                     /translation="MAEESQEMGGIHFPFPFPPYPIQKDFMAELYKVLEAGKIGIFES
                     PTGTGKSLSLICGALSWLRDFEQKKLQAEAGLLAPASGPTSSGRNSVLSSSSCQEPSD
                     TLRPAGDPDWVTEFVQKKEERDLVERLREEQLRRRKREERLQEVCQDGRRRFAAKRSR
                     QEEEETETLLRLSREMLAADTAPEQLGQLECGEEHLVLAEYESDEERRGSRADEGEDD
                     LEEEHITKIYYCSRTHSQLAQFVREVQKSPFGKETRLVSLGSRQSLCVNEDVKSLGSV
                     HLMNDRCVDMQRRKHKKMRIGEDKPKRRRQKMQASCPFYNHEQMELLRDEILLEVKDM
                     EQLVALGKEAQACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRLQGQVVIIDEA
                     HNLIDTITNIHSTEVNGSQLCQAHSQLLQYMERYRKRLKAKNLMYIKQILYLLDKFVA
                     VLGGNVKQNPSTQSLPQTGSELQSINDFLFQSQVDNINLFKVQRYLEKSMLSRKLFGF
                     TECFGVVLPSLSDSEENRGLGGFQQFLKSLQSGPPEDSLEEGQAVALRPASPLMHIEA
                     FLEALTTANQDGRVIVNRQGSVGQSSLKFLLLNPAVHFAQVVKECRALVIAGGTMQPV
                     SDFREQLLACSGVEASRVVEFSCGHVIPPDNILPLIICSGPSNQQLEFTYQRRELPQM
                     MEETGRILCNLCNVVPGGMVCFLPSYEYLRQVHAHWDKTGLLARLSVRKKIFQEPKRA
                     SQVEQVLTAYSTCIASCSHSEGHLTGALLLSVVGGKMSEGINFSDDLGRCVVMVGMPY
                     PNIKSPELQEKMAYLDQTIPRTHGQPPPGTVLIENLCMKAINQSIGRAIRHQKDFASI
                     VLLDHRYARPSILAKLPAWIRDRVEVKATFGPAFAAMRKFHREKSHPCLG"
ORIGIN      
        1 ctttgggcag gcagatgtat atgtagcaga gcactcatac attaagtaaa taaaagtttt
       61 tttaaaaagc tcgatatctc tgtgaaaaca aaaccccgat aaatggtaat agtaaaatcc
      121 taatacgaag agttagatca aggttcaagc acagagccat aaccaaaaca acttgaacct
      181 caaagccccg gatgagctgg agtgcgcagg cgcagtgacg ggggcgtggc caagtggcgg
      241 gcttttctgt ttgcgcatgc tccttctgtg aagcttcaaa ttttatggcg gctaccgggc
      301 ttacttgcgg gcctcaggga gtccgccctg aagatgagag cgaattcggc cctgcctgag
      361 tgaagcgctg acaccgaaga cagagagggc aatggctgaa gaaagccagg agatgggtgg
      421 catccatttt ccgtttccct tcccccccta tcctatccag aaagacttca tggcagaact
      481 ctacaaggtt ttggaggctg gcaagattgg gatatttgag agtccaactg gcacgggaaa
      541 gtccttaagt ctgatttgtg gggccctctc ctggctccgg gactttgaac agaagaaatt
      601 gcaagcagag gctggtctcc tcgctcctgc atctggcccc acaagtagtg ggaggaactc
      661 agtcctgtct tcctcatcct gccaagaacc ctctgacacc ctgagacctg ctggagatcc
      721 tgactgggtc actgaatttg tgcagaagaa agaagaaagg gacctggtgg agaggctgag
      781 ggaggagcag ctgaggagga ggaagcgaga ggagcggctg caggaggtct gccaggatgg
      841 aagacgcagg tttgctgcca agcgctcgag acaggaggaa gaggagaccg agactctcct
      901 gcgcctcagc agggagatgc ttgctgcaga cacagcacca gagcagctgg ggcagctgga
      961 gtgtggggag gagcatctgg ttctggcaga atatgagagt gatgaggaga gaagaggcag
     1021 cagggcggat gagggtgagg atgacttgga ggaagaacat ataaccaaga tttattactg
     1081 cagtcggaca cactcacagc tggcccagtt tgtgcgtgag gtgcagaaga gcccttttgg
     1141 caaggagacg cggctagttt cccttgggtc taggcagagc ctttgtgtga atgaagatgt
     1201 gaaaagcctg ggttctgtgc acctcatgaa tgaccgctgt gtggacatgc aaagacgcaa
     1261 acacaagaag atgagaattg gggaagacaa gccaaagaga aggagacaga agatgcaggc
     1321 ctcctgcccc ttctacaacc atgagcagat ggagcttctc cgggatgaga ttctgctgga
     1381 ggtgaaggac atggagcagc tcgtggccct cgggaaggag gcccaggcct gcccctatta
     1441 tggaagccgc tttgccatcc ctgcagccca gctggtggtg ctgccctacc caatgctgct
     1501 gcacgcagcc acccggcagg ctgcgggaat caggctgcaa gggcaggtgg tcattattga
     1561 cgaggctcac aacctgatcg acaccatcac caatatccac agcacagagg tcaatggttc
     1621 ccagctctgc caggcccatt cccagttgct ccagtacatg gaaagataca ggaagcgttt
     1681 aaaggccaag aacctgatgt acatcaagca gatcctgtac ttgctggaca agtttgtggc
     1741 tgttttggga ggtaacgtta agcaaaaccc tagtacacag agcctgcctc agacagggtc
     1801 tgagctgcag agcatcaacg actttctctt tcagagccag gtggacaaca tcaacctctt
     1861 caaggttcag cggtacctgg agaagagcat gctcagcagg aagctctttg gcttcacaga
     1921 atgctttgga gttgttcttc catccctctc agactctgag gagaaccgag gtctgggtgg
     1981 cttccagcag ttcctgaaga gcctgcagtc agggcctcct gaggactccc tggaggaggg
     2041 ccaggctgta gccctgcggc ctgcctcccc actgatgcac attgaggcct ttttagaagc
     2101 tctcaccaca gccaaccagg atggcagggt gatcgtgaac cgccaaggca gtgttggtca
     2161 gagcagcctt aagttcttac tcttgaaccc agctgtgcac tttgcccagg tggtgaagga
     2221 atgccgagcc ctggtcattg ctggtggcac catgcagccg gtgtctgact ttcgggagca
     2281 gctgctggcg tgttctgggg tagaagcttc gagagtggtt gagttctcct gtggtcacgt
     2341 gatccctcca gacaacatct tgccccttat catatgcagt gggccctcta accaacagct
     2401 ggaattcacc taccagagaa gagagctgcc tcagatgatg gaggagacgg gccgcattct
     2461 ctgtaacttg tgcaacgtgg tccctggagg gatggtgtgc ttccttcctt cctacgagta
     2521 cctgcgccag gtacatgctc actgggacaa gactggcctg ctggcacgtt tgtctgtcag
     2581 gaaaaagatc tttcaagagc ccaagagagc gagccaggtg gagcaggtgc tgacggcgta
     2641 ttccacgtgc attgcgagct gcagtcactc agaaggccat ctgacagggg cccttctcct
     2701 ctctgtggtt ggagggaaga tgagtgaagg gatcaacttc tcggacgacc tgggccggtg
     2761 tgtggtgatg gtggggatgc cgtaccccaa cattaagtct ccagagctac aagagaagat
     2821 ggcctacttg gatcagacca ttcctaggac acatggtcag cccccgccag ggacggtatt
     2881 gatagagaat ctgtgtatga aggctataaa ccaatccata ggcagggcca tcaggcacca
     2941 gaaggacttt gccagcattg tgctcctgga tcaccggtat gcccggccct ccatcctggc
     3001 caagttgcct gcctggatac gagaccgagt ggaagtcaaa gccacctttg ggcctgcttt
     3061 tgctgctatg cggaagttcc atcgagaaaa gtcacaccca tgtctagggt aagcttgtgt
     3121 ttattttctg tgcttgaccc ggccttcgta tatggcctaa gaaggtgcaa accatatgca
     3181 gactgctgtg tgcaccagcc ttcagaggcc gtgccctcca gtgtttggac tcacatagag
     3241 aagccacaag gacagagcca gaacatcctg aagacaccac gttcccggag acaagagtct
     3301 cactgtagca cctggctcag gttcagctct ctgccttttc tgaggtgagg cccgcctgcc
     3361 tctgacccac gccatttaag ctttccttgg ccttggactc ccatctcaga cacagatgtc
     3421 ctgtttcaag ctttattgcc tggcccagaa ttgtacacac atcatctgtc cagaagagaa
     3481 tttgagaaaa caatggggac atacttaata ttgaaagagc tgacataaac tgatttttct
     3541 gaaggaccct tcacaaagac ttggaccctg gtcatatact tctctatacc ccataaagaa
     3601 agaagcattg atcctatcca cagctcctca ggcctctgtg ctcagaacaa cgttcccctg
     3661 taagacatgt catggggcaa aagggtctcc atgtttttca ttttcttctg ttgttccctg
     3721 aacatgaaca gctccttcat gttcagcagt ggctgtccct tatatgacct tcgggaaact
     3781 caggagccat atgcccttgg catttaggca acaccctggg ctgcaaactg agaggaggca
     3841 agaggaggca gaggagagag tgcaggcttg tctttcaatg gtgcttgtac cgcttgcagc
     3901 tcaaaggggt tcgatccttg aatcctcccc agattgaagt gccctcacac ctgggggatg
     3961 ttttgagaca gacagacctt cacagggaga cacgttaaga ttttgtcact agcgcaggac
     4021 tttagcatgc actgaaatgc agctagaaat ccaagttcta aaaggaccca gagaatgaca
     4081 gcctctgtaa accttgaagg attgtcactg ggaatctact catctgttac ctgctttctg
     4141 aaatggcaat gttcccaggg ttatatcata ggaatatcat ccaggtatca tgcccaatta
     4201 aaacattgat tgaattttgt gatcaagtat gagaattttc ctaaatgcaa ttgatatcat
     4261 gataatagat atttgtctag agacagcgtg cagtgtgagc tatgtaaaag cattggggag
     4321 atgcagtggg aggaataatt gatccaggtc atcaaaggcg gcagcaggct gcagaatgaa
     4381 gagacccaga gacctcattt gttgtgtgac ctccatcaag ccacttagag acctccacac
     4441 cttaatgtgt tattcactta ttaaaatgtt tgttccattt cccttataac ctgaaa
//
