LOCUS       XM_006241444            1062 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DNA-damage inducible transcript 3
            (Ddit3), transcript variant X1, mRNA.
ACCESSION   XM_006241444
VERSION     XM_006241444.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006241444.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1062
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1062
                     /gene="Ddit3"
                     /gene_synonym="CHOP; CHOP-10; Chop10; Gadd153; RM4"
                     /note="DNA-damage inducible transcript 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 mRNAs, 29 ESTs, 18 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 63 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:29467"
                     /db_xref="RGD:62391"
     CDS             373..879
                     /gene="Ddit3"
                     /gene_synonym="CHOP; CHOP-10; Chop10; Gadd153; RM4"
                     /codon_start=1
                     /product="DNA damage-inducible transcript 3 protein
                     isoform X1"
                     /protein_id="XP_006241506.1"
                     /db_xref="GeneID:29467"
                     /db_xref="RGD:62391"
                     /translation="MAAESLPFAFETVSSWELEAWYEDLQEVLSSDEIGGTYISSPGN
                     EEEESKTFTTLDPASLAWLTEEPGPAEVTSTSQSPRSPDSSQSSMAQEEEEEDQGRTR
                     KRKQSGQCAARAGKQRMKEKEQENERKVAQLAEENERLKQEIERLTREVETTRRALID
                     RMVSLHQA"
ORIGIN      
        1 gaaacaaacg ttaaagctgc ccttctgaga gaagcggatg gactaccaag gaaatgccag
       61 tacctcagtc tttgggaagc gttagaaggc taaaagagga ggaggtctct taaaagactc
      121 cagaagatgt caatccaggc tcctggacac tacccccccc caggagggac cgaatagcat
      181 aaaagatact cgctctccgc tccagaggtc agtatcttga gtctaatacg tcgatcatac
      241 catgttgaag atgagcgggt ggcagcgaca gagccaaaat aacagccgga acctgaggag
      301 agagtgttcc agaaggaagt gcatcttcat acaccaccac acctgaaagc agaaaccggt
      361 ccaattacag tcatggcagc tgagtctctg cctttcgcct ttgagacagt gtccagctgg
      421 gagctggaag cctggtatga ggatctgcag gaggtcctgt cctcagatga aattgggggc
      481 acctatatct catccccagg aaacgaagag gaagaatcaa aaaccttcac tactcttgac
      541 cctgcatccc tagcttggct gactgaggag ccagggccag cagaggtcac aagcacctcc
      601 caaagccctc gctctccaga ttccagtcag agttctatgg ctcaggagga agaagaggaa
      661 gatcaaggaa gaactaggaa acggaaacag agtggtcagt gcgcagcccg ggctgggaaa
      721 cagcgcatga aggagaagga gcaggagaat gagaggaaag tggcacagct tgctgaagag
      781 aacgagcggc tcaagcagga aatcgagcgc ctgaccaggg aggtagagac cacacggcgg
      841 gctctgatcg accgcatggt cagtctgcac caagcatgaa ctgttggcat cacctcctgt
      901 ctgtctctcc cggagtgtac ccagcaccat cacgccagtg ccaagcatgt aatctccagt
      961 gcacatgctg aggaggggac tgagggtaga ccaaaggaga ggggcttgta cactgtacat
     1021 tctttattac tgtccatacc cagtaaagtg actttgtgtg aa
//
