LOCUS       XM_008770254            1182 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus dopa decarboxylase (Ddc), transcript
            variant X3, mRNA.
ACCESSION   XM_008770254
VERSION     XM_008770254.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_008770254.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1182
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1182
                     /gene="Ddc"
                     /gene_synonym="AADC"
                     /note="dopa decarboxylase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:24311"
                     /db_xref="RGD:2494"
     CDS             82..1167
                     /gene="Ddc"
                     /gene_synonym="AADC"
                     /codon_start=1
                     /product="aromatic-L-amino-acid decarboxylase isoform X3"
                     /protein_id="XP_008768476.2"
                     /db_xref="GeneID:24311"
                     /db_xref="RGD:2494"
                     /translation="MDSREFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRALIPT
                     TAPQEPETYEDIIRDIEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIG
                     FSWAASPACTELETVMMDWLGKMLELPEAFLAGRAGEGGGVIQGSASEATLVALLAAR
                     TKMIRQLQAASPELTQAALMEKLVAYTSDQAHSSVERAGLIGGVKIKAIPSDGNYSMR
                     AAALREALERDKAAGLIPFFVVVTLGTTSCCSFDNLLEVGPICNQEGVWLHIDAAYAG
                     SAFICPEFRYLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTEAFNMDPVYLR
                     HSHQDSGLITDYRVVPALLWKGIWNRK"
ORIGIN      
        1 aatgcatcag ttccaagctg tagtttgcag agctggactg agtggacctg tgaagaatcc
       61 aaattccaaa caattttcaa catggattcc cgtgaattcc ggagaagagg gaaggagatg
      121 gtggattata tagctgacta tctggacggc attgagggac gtccagtgta ccctgacgtg
      181 gagcctggct accttcgggc cctgatcccc accactgccc cccaggagcc agaaacatat
      241 gaggacataa tcagagacat tgaaaagata atcatgccag gggtcacaca ctggcacagc
      301 ccctacttct tcgcttactt ccccacggcc agctcctacc cagctatgct tgcggacatg
      361 ctgtgcgggg ctatcggctg cattggcttc tcctgggctg caagcccagc atgcacagag
      421 ctggagacag tgatgatgga ttggctgggg aagatgcttg agctgccaga ggcctttttg
      481 gctggaagag ctggggaagg gggaggagtg atccagggaa gtgccagcga agccaccttg
      541 gtggccctac tggctgctcg gactaaaatg atccgccagc tgcaggcagc ctccccagag
      601 ctgacacaag ctgctctcat ggaaaagctt gtcgcttaca catctgatca ggcacattcc
      661 tccgtagaaa gagctggatt aattggtgga gtcaaaataa aagcaattcc ttcagatggc
      721 aactactcca tgagagctgc tgcccttcgg gaggccctgg agagagacaa ggcggctggc
      781 ctgattcctt tcttcgtggt tgtcacccta ggaaccacat cttgctgctc ttttgacaat
      841 ctcctagaag tgggtcccat ctgcaaccag gagggtgtat ggctgcacat tgatgctgca
      901 tacgcaggca gtgcctttat ctgtcctgag ttccggtatc ttctgaatgg cgtggagttt
      961 gcagattcct ttaactttaa tccccacaag tggcttttgg tgaattttga ctgctctgcc
     1021 atgtgggtga agaagagaac tgacctaacc gaagccttta atatggaccc tgtttatctg
     1081 aggcacagtc accaggactc aggactcatc actgactaca gggttgtccc agctttgctc
     1141 tggaaaggaa tttggaaccg caagtaatgc tgggaggctt ct
//
