LOCUS       XM_039089596            4255 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus damage-specific DNA binding protein 1
            (Ddb1), transcript variant X3, mRNA.
ACCESSION   XM_039089596
VERSION     XM_039089596.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4255
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4255
                     /gene="Ddb1"
                     /note="damage-specific DNA binding protein 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 165 ESTs, 718 long SRA reads"
                     /db_xref="GeneID:64470"
                     /db_xref="RGD:621889"
     CDS             165..3602
                     /gene="Ddb1"
                     /codon_start=1
                     /product="DNA damage-binding protein 1 isoform X3"
                     /protein_id="XP_038945524.1"
                     /db_xref="GeneID:64470"
                     /db_xref="RGD:621889"
                     /translation="MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVV
                     TAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIIT
                     RAHGNVQCFPSQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAF
                     NIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVE
                     AEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRY
                     LLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG
                     DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL
                     RIIRNGIGIHEHASIDLPGIKGLWPLRSDPSRETDDTLVLSFVGQTRVLMLNGEEVEE
                     TELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASC
                     NSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGESNGLSPLCAIGLW
                     TDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIE
                     TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVN
                     YMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGV
                     LSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLI
                     IDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVF
                     QYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNI
                     MALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLG
                     AENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQ
                     GSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTE
                     PATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH"
     polyA_site      4255
                     /gene="Ddb1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gtgatcctct gcgcctggcc tctctggcct gcaacgtgtc ttaggggcgg aggcaacagc
       61 cacggagttg gctgcgtgag ggtgggggtt ctcagtctct tcgctcgtgc ccatctccct
      121 gtcgtcgctc taggcgcccc acgggccggc ccaaggacct caatatgtcg tacaactacg
      181 tcgtaacggc gcagaagcct accgcagtga acggctgtgt gaccggacac tttacttcag
      241 cggaagactt gaacctgttg attgctaaaa acacaagatt agagatctat gtggtcaccg
      301 cagaaggcct acggccagtc aaagaggtgg ggatgtatgg gaagatcgca gttatggagc
      361 tcttcagacc caagggggag agtaaagacc tgctgttcat cttgactgct aagtacaatg
      421 cctgcatcct ggagtataag cagagtggtg aaagcattga tatcattaca agggcccatg
      481 gcaatgtcca gtgtttcccc tctcaggacc gtattggtcg cccctcagag actggcatca
      541 ttggcatcat tgaccctgag tgccgtatga ttggcctccg actctacgat ggccttttca
      601 aggtcattcc actagaccga gacaataaag agctcaaggc ctttaacatc cgcctagaag
      661 aattgcatgt catcgatgtc aagttcctgt atggttgtca agcgcctacc atttgctttg
      721 tctaccagga tcctcagggg cggcacgtga aaacctatga ggtgtctctt cgggagaagg
      781 agttcaacaa gggcccttgg aagcaggaga atgtagaagc cgaagcttca atggtgatcg
      841 cagtcccgga gccttttgga ggtgccatca tcattggaca ggagtcaatt acctatcaca
      901 atggtgataa atacctggca atcgctcctc ctatcattaa gcaaagcact attgtgtgcc
      961 ataaccgggt ggatcctaat ggctcacggt accttctggg agatatggaa ggacggcttt
     1021 tcatgctgct cttagagaag gaggagcaga tggatggcac cgtcaccctc aaggaccttc
     1081 gagtggaact ccttggagag acctccattg cagagtgcct aacatatctt gataacggtg
     1141 ttgtgtttgt cgggtctcgc ctgggtgatt cccagctcgt aaagctcaat gtcgacagca
     1201 atgaacaagg ctcctatgta gtggctatgg aaacctttac caacttagga cccattgtgg
     1261 atatgtgtgt ggtggacctg gagaggcagg gacagggtca gctggtcact tgctctggag
     1321 ctttcaagga aggttccttg cggatcatcc ggaacggaat tggaatccat gagcatgcca
     1381 gcattgactt accaggcatc aaaggtttat ggccactgcg gtctgaccca agtcgggaga
     1441 ctgatgacac tttggtactc tcttttgtgg gccagacaag agttctcatg ctaaatggag
     1501 aggaagtgga agaaacagaa ttgatgggct ttgtggacga tcagcagact ttcttttgcg
     1561 gcaatgtggc tcatcagcag cttatccaga tcacctcagc gtctgtaagg ttggtctctc
     1621 aagagcccaa agctttggtc agcgagtgga aggagcccca gggcaagaac atcagtgtgg
     1681 cctcctgtaa cagcagccag gtggtagttg ctgtgggaag ggcactatac tatcttcaga
     1741 tccatcctca ggagctccgg caaatcagcc acacagagat ggaacatgaa gtggcttgct
     1801 tggatatcac cccactagga gagagcaatg gcctgtcccc actttgtgcc attggtctct
     1861 ggacagatat ttcagctcgt atcttgaagc tcccatcctt tgaactactg cacaaggaga
     1921 tgctgggtgg agagatcatc cctcgatcta tcctgatgac cacttttgag agcagccact
     1981 acctcctttg tgccttggga gatggggctc tcttctactt tgggctcaac atagagacag
     2041 gcttactgag tgaccgtaaa aaggtgactt tgggtaccca gcccacggtg ttgaggacat
     2101 tccgttctct ttctaccacc aacgtctttg cttgctcaga ccggcccact gtcatctata
     2161 gcagcaatca taagttggtc ttctccaatg ttaacctcaa ggaggtgaac tatatgtgtc
     2221 ctctcaactc agatggctat cctgacagtc tggcattggc caataacagc actctcacca
     2281 ttggcaccat cgatgagatc cagaaactcc atattcgcac ggttcctctc tatgaatctc
     2341 ccaggaagat ctgttatcag gaagtgtctc agtgctttgg ggtcctttcc agccgcattg
     2401 aagttcaaga taccagtgga ggcactactg ctttgaggcc cagtgctagc acccaggccc
     2461 tgtccagcag cgtcagctcc agcaagctct tctctagtag tacggctcct cacgagacct
     2521 cctttggaga agaggtggaa gtgcacaacc tcctcatcat tgaccagcat acttttgaag
     2581 tgcttcatgc ccatcagttt ctacaaaatg agtatgccct cagcctggtc tcctgcaaat
     2641 tgggtaaaga ccccaacaca tacttcattg tgggcacagc catggtatat cctgaagagg
     2701 cggagcccaa acagggtcgt attgtggtct tccagtattc ggatggaaaa ctacagactg
     2761 tggccgaaaa ggaagtaaag ggggctgtgt actctatggt ggagtttaat gggaagctgc
     2821 ttgctagcat caacagcacg gtgcggctct atgaatggac cacagaaaag gaacttcgca
     2881 ctgagtgcaa tcactacaac aacatcatgg ccctgtacct gaagaccaag ggcgacttca
     2941 tcctggtggg cgacctcatg cgatcagtgc tactgcttgc ctacaagcct atggaaggaa
     3001 actttgaaga gattgcccga gactttaatc ccaactggat gagtgcagtg gagatcttgg
     3061 atgatgacaa ttttctggga gctgagaatg cctttaactt gtttgtgtgt cagaaggaca
     3121 gtgctgccac cactgatgag gagcggcagc acctacagga ggttggtctc ttccacctgg
     3181 gcgagtttgt caatgtgttc tgccatggct ccctagttat gcagaatctg ggcgagactt
     3241 ctacccctac ccagggctcg gtgctctttg gcacagtcaa cggcatgata gggctggtga
     3301 cctcactgtc ggagagctgg tacaacctcc tgttggacat gcagaaccga ctcaataagg
     3361 tcatcaaaag tgtgggcaag attgagcact ccttctggag atcctttcac actgagcgaa
     3421 agacagaacc agccacaggc ttcatcgatg gtgacctgat tgaaagtttc ctagatatca
     3481 gccgccccaa gatgcaggag gttgtggcaa acttgcagta tgatgatggc agtggtatga
     3541 agcgggaggc aactgcagat gacctcatca aagtcgtgga ggagctaact cggatccatt
     3601 agccaaggaa caggatttct tttcctggcc ctccctaaag gcgctgccct cctgtcctcc
     3661 cctccttttc ccacccttgt tttcttggca tgggaggctt ttccctaagc cacctgcccc
     3721 tagaaccaca gatgacctgt gtggaaacag ggctttttat aactaaaacc agttcactag
     3781 agacctagga atgggctgaa agtggaatat tttctccctg gatttttacc agccatcacc
     3841 ttggaccacc aagccttgaa tggtgttgcc agttggctcc tcctggggag gacttttgtc
     3901 actcttcggc caagaagcag ctctgtgcac ctgtgtgtgg tgtctcacac tcatgctctg
     3961 tcctctgctg tcttatgtag gttgtgggtg tggggaggtc gaggtaggga agagggtcgg
     4021 gagggttcat tgtcttgagg gcttcctttg ctttcttctc ttgcctctga gaacatcagc
     4081 ctggaggtct gtcaggccgt gggctgcctg agtggaaacc ttggatggtg gataattccc
     4141 aagccacagc ccttctgtct cggggaactc ccttcttcac agagaaggag gtgggggctg
     4201 tgaattggtt gttagtttct gaattttacc aaataaagta gaatctaaga agaaa
//
