LOCUS       XM_039100108            8940 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus doublecortin (Dcx), transcript variant
            X6, mRNA.
ACCESSION   XM_039100108
VERSION     XM_039100108.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8940
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8940
                     /gene="Dcx"
                     /note="doublecortin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 21 ESTs, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 29 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:84394"
                     /db_xref="RGD:620670"
     CDS             192..1277
                     /gene="Dcx"
                     /codon_start=1
                     /product="neuronal migration protein doublecortin isoform
                     X3"
                     /protein_id="XP_038956036.1"
                     /db_xref="GeneID:84394"
                     /db_xref="RGD:620670"
                     /translation="MELDFGHFDERDKASRNMRGSRMNGLPSPTHSAHCSFYRTRTLQ
                     ALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVR
                     YIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQ
                     SLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAI
                     KLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKG
                     NPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTS
                     PGSLRKHKVDLYLPLSLDDSDSLGDSM"
ORIGIN      
        1 gggctttcga gtgattttca agcagaatgt aacagatgtc aaacgggaga agcacaaggc
       61 acacgccttt ctttctctgt gtgtccgcct ctttcttctc ttttatttgc cttattctgt
      121 aggatttttt tgtcctctaa gattctacct gggattttcc tttggaaaag ttgctgtggt
      181 tccaccaaaa tatggaactt gattttggac attttgacga acgagacaaa gcatctagaa
      241 atatgagagg gtcacggatg aatggacttc caagtcccac tcatagtgct cactgtagct
      301 tctacagaac cagaaccttg caggcattaa gtaatgagaa gaaggccaag aaggtacgtt
      361 tctaccgcaa tggggaccgt tacttcaagg ggattgtgta cgctgtttct tctgaccgtt
      421 ttcgtagttt tgatgcattg ctggctgacc tgactcgatc cttgtccgac aacatcaacc
      481 tgcctcaggg agtgcgctac atttacacta ttgatggatc cagaaagatt ggaagcatgg
      541 atgaactgga agaaggggaa agctatgtct gttcctcaga caacttcttt aaaaaggttg
      601 agtataccaa gaatgtcaat cccaactggt cggtcaatgt aaagacatca gccaacatga
      661 aagcgcccca gtccttggct agcagcaaca gtgctcaagc cagagagaac aaggacttcg
      721 tgcgccccaa acttgtgacc atcattcgca gtggggtgaa gcctcggaag gcggtgcgtg
      781 tgcttctcaa caagaaaaca gcccactctt tcgagcaggt cctcactgac atcacagaag
      841 cgatcaaact ggaaaccgga gttgtcaaaa aactctatac ccttgatgga aagcaggtca
      901 cctgtctcca tgatttcttt ggtgatgatg atgtgttcat tgcttgtggc cctgaaaagt
      961 tccgctatgc tcaagatgac ttctccttgg atgagaatga atgcagagtc atgaaaggga
     1021 atccatctgc cacagctggc ccaaaagctt ccccaacacc tcaaaagaca tctgctaaaa
     1081 gcccaggccc aatgcgccgc agcaagtctc cagctgactc agcaaatgga acttctagca
     1141 gtcagctctc aacacctaag tcgaagcagt ctcctatctc tacacccaca agccctggaa
     1201 gtctgcggaa gcacaaggta gacttgtacc tgccactgtc attggatgac tctgattcac
     1261 ttggcgattc catgtgaaag atgataggct aaatcaaagc cgattattat agcagaatac
     1321 tttcgctcaa gtgaccaaca aggctattgg tgcttagaca tttttgttgt tattgttgct
     1381 tttcaaaaca ctctgtagta tgtagggttt attttcttgt gacttctctt ctgggccact
     1441 aattcacatt taccaataag agatagattg ataaccatct tttgagtgac ttttccagaa
     1501 ctgcaaaatg tgctagtcca tgacctttct actgaatgct taggggcctt tgtattttcc
     1561 ccattcaatt tgtgcagaaa ctagtctttc ttctctagaa ggctgtttac gtacacatcg
     1621 cttaaaatgt ttatgtgtgg gggaaaactt tcatatgcag atctaaaagt gaaaaaccta
     1681 agtgtccctt gcctctgtat cttcagaatg ctggaggatc tcaggagagt ggcaagtcag
     1741 atccttggcc tcactcgttg ctcttaattg agcctccagt gtattgtcta gcattcattc
     1801 tggctgttga gatggagaaa caccagcgac ttccaatgtg acaccatgtg cttaaggctg
     1861 tggtatcaga ctggctgcaa gagatgaggt agaatttagg ggaaaaactg cccaaatttc
     1921 agtaggattt acataaagca cagtggattc ctggtcaact cctctactgg ggaaattttg
     1981 gaatcaatca ataattgatt agtttggggt acatgatgtc acatacatga tcccaccagg
     2041 aggctttcta atgtacacgt tagtacatga accgcatggt atccatctag ctctgttcta
     2101 ttgaatgcct tgtaaacaac caacactaca aacactgtga gaatttgttt tcaggtctga
     2161 caccttttgg tcgcttttta tagcaagaaa ccatatccat tttttataat aactcaagtc
     2221 tgtatttcag gagcaaaact cttcgggctc cttttttata agctggtgat ttttttcctt
     2281 tgtctaaaaa acacgagtag aaaattgacc aaaaaaatgc agaagaatac tgtagtttag
     2341 aaatcatgct ctcactgcca aacagaaagc tccgggagaa aactcaacga ctagaggcca
     2401 attcaataga atcaggtttt tgataccttt ttaacagtta cactttcagt actaatttca
     2461 atgtggacca gacattctaa ttatatttta aatgaaatgt tatggcatat tttaagtaag
     2521 tcttttttat ctataatcct aatatttcat acttaagata cagagacctt tcacttgact
     2581 ttaacattta gaaaggattt ctctttatta aggattgctc acttgaaata actgtctttg
     2641 aggtacaggt ttttaaaatt actttttctc tgtaatcata gcccatgata gccaagacaa
     2701 ctaaatttag gtgaaagcca tgcatgccaa ttctgtgttt gatttttagt agataggcag
     2761 atttccttta cttctttgtc attgttcaga tagcttgaaa gatgcagcgt tcaaagccaa
     2821 catgtcgttt ggctgctgaa tgacatgcag ctgtcccttc attctaagta aaatgagtgt
     2881 ggggttcgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     2941 tgtgtctagg ctgcttcaca attaggaaat actgcacaag acaactcaac gtggattgat
     3001 gacaacttgg tggcattgct gatgcgcagg gggaagtagg atggcagggg tagcgagagc
     3061 ccccttgata aatttcagat gtccttaatt actagattac aagaaacatt ttcggttttg
     3121 gttcaggaga agggggatga tgagagctct ggtttctgct caaactgctc attgaagagc
     3181 ccaaaatgat gaggttttgc tcttcccccc tctttattgg taagcccaca tgaaatgatt
     3241 aagaaaccca ttttaatcag cccctatttt ttctagaagc tcagtgattt cttagtgcct
     3301 cccagagcat ttgagttaat tagggaaaat tggttatttg ggatggatag aaattgtggt
     3361 aggaggtcta tttttaacct ctgggccaga tcctccagca cactctatgt tggtctttga
     3421 gcaaatccca tgttgtccca agtattcatt taagacgaga catgcagatc ctactgaaag
     3481 agtaggagca aagagaattc aacagtcctc atgcccaggc cccttggttc tctgagtatt
     3541 tctctacttg tagcataata tagcacaaga aagtactgtg ggcatatctt tagaatattc
     3601 ttagaacaaa cattctttta taacaacagt gtcctttctg cttttctttg agctaactac
     3661 aaggaaacct ttacaaaaca ctttttattt atatacagga acagttacat ataaaaaata
     3721 tttttaactg ctattttgtg tggtataatt gaaaactcaa gtctccaata atttcatttt
     3781 aaattggctg aaattcaagt aaattgtttt cagaaataag ctcctacacc ccccaaattc
     3841 attctcagtt tttcctaata cagttttact actttagtcc catcgagttc agtgtgcatg
     3901 gtcagcaagc atttgccacc acttcccata acacctcccc ctctctcttt ttctctttct
     3961 ctctgtctct ctgtctctct cacgcgcgtg tgcgcgcgcg ctcacacaca cacacacaca
     4021 cacacacaca cacacacaca caccatgttg cttgttccta cctcctgact tttcttcccc
     4081 acagaaatag aaataggggc ataaaaaggg aaatgtatat atgggggctg ggttgaacaa
     4141 ctaacttcgt aagtagtgct aagtagaatt aaagcgagag aaaagcttct tttctcatca
     4201 ctgttttgga aaggatagcc attagcatga ctgctttgtg tccttgcgga ctttagtatt
     4261 agcctagact gagttatagc attttctagc tggaaggaag attaagatca catcatctgc
     4321 tccaaatttt tcattttctt aaggccagga aacagaccaa gatgtaaagt gatttccccc
     4381 taaggtcaca cagctgccca ttggcagtgc tgggattaga acctacacct ctgggctcat
     4441 attccggggt attttcccaa ctagccagta ttgtcttttg tgaggttgct gaaaattctt
     4501 tcccagggtc atgttgcatc ctggatctat atgctacttt gctggtctca gcaagaaatc
     4561 cacacagcaa tctaatctgg cccttcctcc tcattttcac attacttcat ccacatggcc
     4621 tgtcaacagc gccaaggaga gggatgcatt gaaatgttgg gcaccagaag gtggctgccc
     4681 taccttgagg aatcttctaa atggccctct gaactcctac tttatccacg tagaatggaa
     4741 aatgactact ttgtccctta tcggcttcct tcaatgtcat ggcacacatg ttcctcccag
     4801 gatatggaag tggttacttg tttctgggac agagaaaata agaaatgaag aacagagcaa
     4861 tagctttgtt tattctgact ttctaagatg acttttttat catttaaaaa ttagtctggc
     4921 tatctttcct actaataacg atttccttta aaatatggta gtgagccaag ccagagaaag
     4981 ataatcaagt ctcgtatttg tcctgaatct ctatgtcctc atagccacgc tccctggtgc
     5041 aaacaatttt caggtttaaa caagttgatt ttgtttacta aattgtgccc tggctgacac
     5101 tgaatatttg tatctatacc aaaaatagca cagtgacttt acacattatg ttctctctct
     5161 ctatgtagct tatttctgtg gctttccatg acagaagtta gggcaacgtg atctgtacgt
     5221 gttagtttct ttgcatcaag gaactaacaa atattgactg aattctaaaa gaactcttac
     5281 tagacttacc caagttcagg aacttctcta tcttttcttc tctccagttg ggagtgacca
     5341 aggaatcgta aagtgggtgt gtatcttcta tatcctagga tcatctagcc taagtttaag
     5401 gcaactagcc caatgcttga tttgtataaa attgtgtatc catcaccggt ctcctcaata
     5461 tcctacatag agattttccc agttcctctc acattagatt ccaaatggat ttcccattta
     5521 gaaaacagag aaggaactaa gccctatctc cttggaatgg gagcagtcac atgtccatgg
     5581 gtccccaatg aacttctgtg atggtgagaa tatttcagga gaggagactg ccttgggaac
     5641 agctatagca agagacttct ccagcagaaa cccgatgacg gcatagcttt actgacttcc
     5701 ttcatgatct agtttgcata ggatctttct cttttcttcc tttattcttc tttttttgga
     5761 atttattgga gcctgttctt gggcacatgg ggccatttgg acccatacct aggcctcagt
     5821 tatatattgc cttcgctttt taagaggatt aggcttctag attcaaactg gttttctaag
     5881 tagggaaggt gtattttgaa agtcatacgg ggcacaggag ggctgatggt cctattattt
     5941 agagctggaa ccctgagatg gcaaaggatg agtactgacc taggcattta gaatacgtca
     6001 gggctgatct ggagtttaga ggctgtcatg cttctgcctc tggcctacta aaaccacatg
     6061 tgtagtgcaa ctcacaattc tgggaatcat gtaggatttc ctcttctttc aatcatggcc
     6121 acctggagca agaataggcc actgactttt caggctttcc ttttgattag agaggcctct
     6181 atctgccttg ggtgcaaaat gaagtttcat tagccatcac accaaaggct tcttagtggt
     6241 cacttgtatg ccccctcttt caggattgat gtagagctcc tgctttggcc aaactggtgt
     6301 gagattggct atctttggga agtgaagtgt ttcttaagct gtttggagtc aaaatattct
     6361 gtaattagaa gtgattttgc ccctctttag catacctggg gttagggaag tagagaattc
     6421 tcaattgaaa gtaagtcact ttcctgcttg ggtaataagg ccaggtgagt tgcaaaaggt
     6481 caaagagaac acaaaagtca gaagacaaag tcttgtaatc taaagcaaag acccgaaggt
     6541 ttcagaatgt ctcaagtctg ggcaataatt caaggaaata aatggctatt tgtcattcca
     6601 tttcctgttt tctttctcta tttagatgcc tatatttgtt ctcagtttcg actctgttat
     6661 caatttctca ttccgtagca aaaacatcca ttctttgacg tgtgcggcac ttcctcctct
     6721 tggaattctt tgcaccttcc cacctcacaa ctgggcatat gcagcttcat agtctgttaa
     6781 gttttgcctt gggattgaag ggaaataatt ttccatttcg acaattcctg gttctaccca
     6841 agttcagtca caagtaggtt ggtagaaatc aacctgattc tggccctttc ttcttttctg
     6901 ttttagtctc agcagatctt ttcaaacgtt gtcctttcgg ctcatgaatg ttaggtattt
     6961 accttctaag caagcattgt acagaacact ttctgcttct tttgaaatgt cattttgtga
     7021 acagattgta atgtgctcag ataaataatc agctgaacag gaaaagagtc tacccatcta
     7081 ttcaaattgg caaactattg ttagttggtt tctttaaatt tgctcatagt tttgaaaagc
     7141 tgcaatataa tatcatgaga gaccacagat aattgttcct gtcatttggt tgggctgaat
     7201 agagactggg ggtgggggtg ggggtgggga agcaggaacg atttgtttaa acttttacca
     7261 ctattcatta agctctctct gttataacat tatgatctgt gtttgccact tattgaatta
     7321 tttaagctaa gctggtaggc aattaaaatt aatttaagtc aaaaagtatc taacacatct
     7381 aggctaaaga aaaaaaatac ttagttgaaa tgtatttgtc cttccaatat tagatttacc
     7441 taaacatttt ccttttaaca tcaactgttc atgatccagg actgtctgtc catgtatgtc
     7501 ctgtaaatta gcaggcttaa gtctactgat taattcaaca gagttcagaa tccctgggga
     7561 tgtcaatgtc actgcttggc aataccatat gtattgccta ttttttccag tgacttttct
     7621 ttctaagttc tcttaaagag gtttgcgaaa gtaagaagtt aagctaaaat atatccaatg
     7681 tttggtagtg tatcatattg cagcattaaa ccaacaaccc tttatgactt atacacagct
     7741 aatgcatggt ttgagagtgg attttgcatt tttcatgtgc agtaaattat ttaaaatgtt
     7801 tttggtcacc tttttgtgcc attaaacttg tacagaaaat gctcttatgg ccattttcaa
     7861 agggagaaag tttaaaatgg aaacagccca ccctttctgc cctatagctg tagttagaat
     7921 tgagtacgtg tagaaaaacg gctgtaattg gtggttgtag tgttagagtt tgttagctgg
     7981 ctagtgacta cctttggaga gtaaatgcat ggtcttgtac atcacatttc ttaaataact
     8041 ctttttaacc tcggaaaaga atatattatt ccatgtggcc ctcttccctc cctccactcc
     8101 ctgctcccag atatcttacc attaactgta aataaccgat ttaggggcca agaattcctg
     8161 ccaagtaaag tcagaaacga gcaaaaaaac caaggggcgt gtgtgaagag aattttacaa
     8221 caatttctca gaagtcattg accatttcta aaggaaaggc acggttatca aagcttcagc
     8281 tgtctttgac ctaaaaatca gaggcaaatt gggagggtct ttggctgcca gattacagta
     8341 tagaattgaa taattcttag aatcatacaa cccaaggatg tccctgatcc ctgcactagt
     8401 tgtgaggtat ttggatgcat caaaggtgtg ttgacctata tttattgggg acaaaagaaa
     8461 agcaaatgtg caacgaatgc tcaggggttt cagctaggcc ccagtcagca aaagcaagga
     8521 ggtgagttta gatagatgca ttgtctgttt cccaggcaat gcttagactt tgagtgatac
     8581 aaaggcagtg tttcaagaag acactctctt ctttggtttg ctgttctctc ttggactggt
     8641 atgtttggca aggcccatgt aagctggtta gagcaggtct tttatctccc ccaccataat
     8701 ttgatgaggg ctctttggtt tgaggacttc aaggctgtct agagaagttc ccccatgtgt
     8761 gtgaggtgtt gtgaactgtg aacactgtac atcttcagtg ttcaatacag ggcagccaaa
     8821 gagctgctct tgcaatcttt tttggctctc aagctctgtt ctccatcgaa ttctcatttc
     8881 tgtgtacatt tgcaagatgt gtgtaatgtc attttccaaa aataaaattt gatttcaata
//
