LOCUS       XM_039100107            8951 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus doublecortin (Dcx), transcript variant
            X5, mRNA.
ACCESSION   XM_039100107
VERSION     XM_039100107.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8951
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8951
                     /gene="Dcx"
                     /note="doublecortin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 21 ESTs, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 38 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:84394"
                     /db_xref="RGD:620670"
     CDS             191..1288
                     /gene="Dcx"
                     /codon_start=1
                     /product="neuronal migration protein doublecortin isoform
                     X2"
                     /protein_id="XP_038956035.1"
                     /db_xref="GeneID:84394"
                     /db_xref="RGD:620670"
                     /translation="MELDFGHFDERDKASRNMRGSRMNGLPSPTHSAHCSFYRTRTLQ
                     ALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVR
                     YIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQ
                     SLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAI
                     KLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFRYAQDDFSLDENECRVMKG
                     NPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSGNDQDANGTSSSQLSTPKSKQSPI
                     STPTSPGSLRKHKDLYLPLSLDDSDSLGDSM"
ORIGIN      
        1 ggctttcgag tgattttcaa gcagaatgta acagatgtca aacgggagaa gcacaaggca
       61 cacgcctttc tttctctgtg tgtccgcctc tttcttctct tttatttgcc ttattctgta
      121 ggattttttt gtcctctaag attctacctg ggattttcct ttggaaaagt tgctgtggtt
      181 ccaccaaaat atggaacttg attttggaca ttttgacgaa cgagacaaag catctagaaa
      241 tatgagaggg tcacggatga atggacttcc aagtcccact catagtgctc actgtagctt
      301 ctacagaacc agaaccttgc aggcattaag taatgagaag aaggccaaga aggtacgttt
      361 ctaccgcaat ggggaccgtt acttcaaggg gattgtgtac gctgtttctt ctgaccgttt
      421 tcgtagtttt gatgcattgc tggctgacct gactcgatcc ttgtccgaca acatcaacct
      481 gcctcaggga gtgcgctaca tttacactat tgatggatcc agaaagattg gaagcatgga
      541 tgaactggaa gaaggggaaa gctatgtctg ttcctcagac aacttcttta aaaaggttga
      601 gtataccaag aatgtcaatc ccaactggtc ggtcaatgta aagacatcag ccaacatgaa
      661 agcgccccag tccttggcta gcagcaacag tgctcaagcc agagagaaca aggacttcgt
      721 gcgccccaaa cttgtgacca tcattcgcag tggggtgaag cctcggaagg cggtgcgtgt
      781 gcttctcaac aagaaaacag cccactcttt cgagcaggtc ctcactgaca tcacagaagc
      841 gatcaaactg gaaaccggag ttgtcaaaaa actctatacc cttgatggaa agcaggtcac
      901 ctgtctccat gatttctttg gtgatgatga tgtgttcatt gcttgtggcc ctgaaaagtt
      961 ccgctatgct caagatgact tctccttgga tgagaatgaa tgcagagtca tgaaagggaa
     1021 tccatctgcc acagctggcc caaaagcttc cccaacacct caaaagacat ctgctaaaag
     1081 cccaggccca atgcgccgca gcaagtctcc agctgactca ggtaacgacc aagacgcaaa
     1141 tggaacttct agcagtcagc tctcaacacc taagtcgaag cagtctccta tctctacacc
     1201 cacaagccct ggaagtctgc ggaagcacaa ggacttgtac ctgccactgt cattggatga
     1261 ctctgattca cttggcgatt ccatgtgaaa gatgataggc taaatcaaag ccgattatta
     1321 tagcagaata ctttcgctca agtgaccaac aaggctattg gtgcttagac atttttgttg
     1381 ttattgttgc ttttcaaaac actctgtagt atgtagggtt tattttcttg tgacttctct
     1441 tctgggccac taattcacat ttaccaataa gagatagatt gataaccatc ttttgagtga
     1501 cttttccaga actgcaaaat gtgctagtcc atgacctttc tactgaatgc ttaggggcct
     1561 ttgtattttc cccattcaat ttgtgcagaa actagtcttt cttctctaga aggctgttta
     1621 cgtacacatc gcttaaaatg tttatgtgtg ggggaaaact ttcatatgca gatctaaaag
     1681 tgaaaaacct aagtgtccct tgcctctgta tcttcagaat gctggaggat ctcaggagag
     1741 tggcaagtca gatccttggc ctcactcgtt gctcttaatt gagcctccag tgtattgtct
     1801 agcattcatt ctggctgttg agatggagaa acaccagcga cttccaatgt gacaccatgt
     1861 gcttaaggct gtggtatcag actggctgca agagatgagg tagaatttag gggaaaaact
     1921 gcccaaattt cagtaggatt tacataaagc acagtggatt cctggtcaac tcctctactg
     1981 gggaaatttt ggaatcaatc aataattgat tagtttgggg tacatgatgt cacatacatg
     2041 atcccaccag gaggctttct aatgtacacg ttagtacatg aaccgcatgg tatccatcta
     2101 gctctgttct attgaatgcc ttgtaaacaa ccaacactac aaacactgtg agaatttgtt
     2161 ttcaggtctg acaccttttg gtcgcttttt atagcaagaa accatatcca ttttttataa
     2221 taactcaagt ctgtatttca ggagcaaaac tcttcgggct ccttttttat aagctggtga
     2281 tttttttcct ttgtctaaaa aacacgagta gaaaattgac caaaaaaatg cagaagaata
     2341 ctgtagttta gaaatcatgc tctcactgcc aaacagaaag ctccgggaga aaactcaacg
     2401 actagaggcc aattcaatag aatcaggttt ttgatacctt tttaacagtt acactttcag
     2461 tactaatttc aatgtggacc agacattcta attatatttt aaatgaaatg ttatggcata
     2521 ttttaagtaa gtctttttta tctataatcc taatatttca tacttaagat acagagacct
     2581 ttcacttgac tttaacattt agaaaggatt tctctttatt aaggattgct cacttgaaat
     2641 aactgtcttt gaggtacagg tttttaaaat tactttttct ctgtaatcat agcccatgat
     2701 agccaagaca actaaattta ggtgaaagcc atgcatgcca attctgtgtt tgatttttag
     2761 tagataggca gatttccttt acttctttgt cattgttcag atagcttgaa agatgcagcg
     2821 ttcaaagcca acatgtcgtt tggctgctga atgacatgca gctgtccctt cattctaagt
     2881 aaaatgagtg tggggttcgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     2941 gtgtgtgtgt gtgtgtctag gctgcttcac aattaggaaa tactgcacaa gacaactcaa
     3001 cgtggattga tgacaacttg gtggcattgc tgatgcgcag ggggaagtag gatggcaggg
     3061 gtagcgagag cccccttgat aaatttcaga tgtccttaat tactagatta caagaaacat
     3121 tttcggtttt ggttcaggag aagggggatg atgagagctc tggtttctgc tcaaactgct
     3181 cattgaagag cccaaaatga tgaggttttg ctcttccccc ctctttattg gtaagcccac
     3241 atgaaatgat taagaaaccc attttaatca gcccctattt tttctagaag ctcagtgatt
     3301 tcttagtgcc tcccagagca tttgagttaa ttagggaaaa ttggttattt gggatggata
     3361 gaaattgtgg taggaggtct atttttaacc tctgggccag atcctccagc acactctatg
     3421 ttggtctttg agcaaatccc atgttgtccc aagtattcat ttaagacgag acatgcagat
     3481 cctactgaaa gagtaggagc aaagagaatt caacagtcct catgcccagg ccccttggtt
     3541 ctctgagtat ttctctactt gtagcataat atagcacaag aaagtactgt gggcatatct
     3601 ttagaatatt cttagaacaa acattctttt ataacaacag tgtcctttct gcttttcttt
     3661 gagctaacta caaggaaacc tttacaaaac actttttatt tatatacagg aacagttaca
     3721 tataaaaaat atttttaact gctattttgt gtggtataat tgaaaactca agtctccaat
     3781 aatttcattt taaattggct gaaattcaag taaattgttt tcagaaataa gctcctacac
     3841 cccccaaatt cattctcagt ttttcctaat acagttttac tactttagtc ccatcgagtt
     3901 cagtgtgcat ggtcagcaag catttgccac cacttcccat aacacctccc cctctctctt
     3961 tttctctttc tctctgtctc tctgtctctc tcacgcgcgt gtgcgcgcgc gctcacacac
     4021 acacacacac acacacacac acacacacac acaccatgtt gcttgttcct acctcctgac
     4081 ttttcttccc cacagaaata gaaatagggg cataaaaagg gaaatgtata tatgggggct
     4141 gggttgaaca actaacttcg taagtagtgc taagtagaat taaagcgaga gaaaagcttc
     4201 ttttctcatc actgttttgg aaaggatagc cattagcatg actgctttgt gtccttgcgg
     4261 actttagtat tagcctagac tgagttatag cattttctag ctggaaggaa gattaagatc
     4321 acatcatctg ctccaaattt ttcattttct taaggccagg aaacagacca agatgtaaag
     4381 tgatttcccc ctaaggtcac acagctgccc attggcagtg ctgggattag aacctacacc
     4441 tctgggctca tattccgggg tattttccca actagccagt attgtctttt gtgaggttgc
     4501 tgaaaattct ttcccagggt catgttgcat cctggatcta tatgctactt tgctggtctc
     4561 agcaagaaat ccacacagca atctaatctg gcccttcctc ctcattttca cattacttca
     4621 tccacatggc ctgtcaacag cgccaaggag agggatgcat tgaaatgttg ggcaccagaa
     4681 ggtggctgcc ctaccttgag gaatcttcta aatggccctc tgaactccta ctttatccac
     4741 gtagaatgga aaatgactac tttgtccctt atcggcttcc ttcaatgtca tggcacacat
     4801 gttcctccca ggatatggaa gtggttactt gtttctggga cagagaaaat aagaaatgaa
     4861 gaacagagca atagctttgt ttattctgac tttctaagat gactttttta tcatttaaaa
     4921 attagtctgg ctatctttcc tactaataac gatttccttt aaaatatggt agtgagccaa
     4981 gccagagaaa gataatcaag tctcgtattt gtcctgaatc tctatgtcct catagccacg
     5041 ctccctggtg caaacaattt tcaggtttaa acaagttgat tttgtttact aaattgtgcc
     5101 ctggctgaca ctgaatattt gtatctatac caaaaatagc acagtgactt tacacattat
     5161 gttctctctc tctatgtagc ttatttctgt ggctttccat gacagaagtt agggcaacgt
     5221 gatctgtacg tgttagtttc tttgcatcaa ggaactaaca aatattgact gaattctaaa
     5281 agaactctta ctagacttac ccaagttcag gaacttctct atcttttctt ctctccagtt
     5341 gggagtgacc aaggaatcgt aaagtgggtg tgtatcttct atatcctagg atcatctagc
     5401 ctaagtttaa ggcaactagc ccaatgcttg atttgtataa aattgtgtat ccatcaccgg
     5461 tctcctcaat atcctacata gagattttcc cagttcctct cacattagat tccaaatgga
     5521 tttcccattt agaaaacaga gaaggaacta agccctatct ccttggaatg ggagcagtca
     5581 catgtccatg ggtccccaat gaacttctgt gatggtgaga atatttcagg agaggagact
     5641 gccttgggaa cagctatagc aagagacttc tccagcagaa acccgatgac ggcatagctt
     5701 tactgacttc cttcatgatc tagtttgcat aggatctttc tcttttcttc ctttattctt
     5761 ctttttttgg aatttattgg agcctgttct tgggcacatg gggccatttg gacccatacc
     5821 taggcctcag ttatatattg ccttcgcttt ttaagaggat taggcttcta gattcaaact
     5881 ggttttctaa gtagggaagg tgtattttga aagtcatacg gggcacagga gggctgatgg
     5941 tcctattatt tagagctgga accctgagat ggcaaaggat gagtactgac ctaggcattt
     6001 agaatacgtc agggctgatc tggagtttag aggctgtcat gcttctgcct ctggcctact
     6061 aaaaccacat gtgtagtgca actcacaatt ctgggaatca tgtaggattt cctcttcttt
     6121 caatcatggc cacctggagc aagaataggc cactgacttt tcaggctttc cttttgatta
     6181 gagaggcctc tatctgcctt gggtgcaaaa tgaagtttca ttagccatca caccaaaggc
     6241 ttcttagtgg tcacttgtat gccccctctt tcaggattga tgtagagctc ctgctttggc
     6301 caaactggtg tgagattggc tatctttggg aagtgaagtg tttcttaagc tgtttggagt
     6361 caaaatattc tgtaattaga agtgattttg cccctcttta gcatacctgg ggttagggaa
     6421 gtagagaatt ctcaattgaa agtaagtcac tttcctgctt gggtaataag gccaggtgag
     6481 ttgcaaaagg tcaaagagaa cacaaaagtc agaagacaaa gtcttgtaat ctaaagcaaa
     6541 gacccgaagg tttcagaatg tctcaagtct gggcaataat tcaaggaaat aaatggctat
     6601 ttgtcattcc atttcctgtt ttctttctct atttagatgc ctatatttgt tctcagtttc
     6661 gactctgtta tcaatttctc attccgtagc aaaaacatcc attctttgac gtgtgcggca
     6721 cttcctcctc ttggaattct ttgcaccttc ccacctcaca actgggcata tgcagcttca
     6781 tagtctgtta agttttgcct tgggattgaa gggaaataat tttccatttc gacaattcct
     6841 ggttctaccc aagttcagtc acaagtaggt tggtagaaat caacctgatt ctggcccttt
     6901 cttcttttct gttttagtct cagcagatct tttcaaacgt tgtcctttcg gctcatgaat
     6961 gttaggtatt taccttctaa gcaagcattg tacagaacac tttctgcttc ttttgaaatg
     7021 tcattttgtg aacagattgt aatgtgctca gataaataat cagctgaaca ggaaaagagt
     7081 ctacccatct attcaaattg gcaaactatt gttagttggt ttctttaaat ttgctcatag
     7141 ttttgaaaag ctgcaatata atatcatgag agaccacaga taattgttcc tgtcatttgg
     7201 ttgggctgaa tagagactgg gggtgggggt gggggtgggg aagcaggaac gatttgttta
     7261 aacttttacc actattcatt aagctctctc tgttataaca ttatgatctg tgtttgccac
     7321 ttattgaatt atttaagcta agctggtagg caattaaaat taatttaagt caaaaagtat
     7381 ctaacacatc taggctaaag aaaaaaaata cttagttgaa atgtatttgt ccttccaata
     7441 ttagatttac ctaaacattt tccttttaac atcaactgtt catgatccag gactgtctgt
     7501 ccatgtatgt cctgtaaatt agcaggctta agtctactga ttaattcaac agagttcaga
     7561 atccctgggg atgtcaatgt cactgcttgg caataccata tgtattgcct attttttcca
     7621 gtgacttttc tttctaagtt ctcttaaaga ggtttgcgaa agtaagaagt taagctaaaa
     7681 tatatccaat gtttggtagt gtatcatatt gcagcattaa accaacaacc ctttatgact
     7741 tatacacagc taatgcatgg tttgagagtg gattttgcat ttttcatgtg cagtaaatta
     7801 tttaaaatgt ttttggtcac ctttttgtgc cattaaactt gtacagaaaa tgctcttatg
     7861 gccattttca aagggagaaa gtttaaaatg gaaacagccc accctttctg ccctatagct
     7921 gtagttagaa ttgagtacgt gtagaaaaac ggctgtaatt ggtggttgta gtgttagagt
     7981 ttgttagctg gctagtgact acctttggag agtaaatgca tggtcttgta catcacattt
     8041 cttaaataac tctttttaac ctcggaaaag aatatattat tccatgtggc cctcttccct
     8101 ccctccactc cctgctccca gatatcttac cattaactgt aaataaccga tttaggggcc
     8161 aagaattcct gccaagtaaa gtcagaaacg agcaaaaaaa ccaaggggcg tgtgtgaaga
     8221 gaattttaca acaatttctc agaagtcatt gaccatttct aaaggaaagg cacggttatc
     8281 aaagcttcag ctgtctttga cctaaaaatc agaggcaaat tgggagggtc tttggctgcc
     8341 agattacagt atagaattga ataattctta gaatcataca acccaaggat gtccctgatc
     8401 cctgcactag ttgtgaggta tttggatgca tcaaaggtgt gttgacctat atttattggg
     8461 gacaaaagaa aagcaaatgt gcaacgaatg ctcaggggtt tcagctaggc cccagtcagc
     8521 aaaagcaagg aggtgagttt agatagatgc attgtctgtt tcccaggcaa tgcttagact
     8581 ttgagtgata caaaggcagt gtttcaagaa gacactctct tctttggttt gctgttctct
     8641 cttggactgg tatgtttggc aaggcccatg taagctggtt agagcaggtc ttttatctcc
     8701 cccaccataa tttgatgagg gctctttggt ttgaggactt caaggctgtc tagagaagtt
     8761 cccccatgtg tgtgaggtgt tgtgaactgt gaacactgta catcttcagt gttcaataca
     8821 gggcagccaa agagctgctc ttgcaatctt ttttggctct caagctctgt tctccatcga
     8881 attctcattt ctgtgtacat ttgcaagatg tgtgtaatgt cattttccaa aaataaaatt
     8941 tgatttcaat a
//
