LOCUS       XM_008761243            2428 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DC-STAMP domain containing 1 (Dcst1),
            transcript variant X1, mRNA.
ACCESSION   XM_008761243
VERSION     XM_008761243.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008761243.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008761243.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2428
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2428
                     /gene="Dcst1"
                     /note="DC-STAMP domain containing 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:295246"
                     /db_xref="RGD:1307756"
     CDS             33..2237
                     /gene="Dcst1"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase DCST1 isoform X1"
                     /protein_id="XP_008759465.2"
                     /db_xref="GeneID:295246"
                     /db_xref="RGD:1307756"
                     /translation="MSFLSSTFHSLGIFEKISGIKEALKNRLLDITQRQYRAGGQQRK
                     RPHTIIQGLLRWGLPVSWSRFLWRQPGEFPVTAFLLGTGTGGLLAIGLFQLLVNPMNI
                     YEEQKVVALYGLTSLGAIGWGISPHIRCASLLLVPKMLGKEGRLFIMGYALASIYKGP
                     VANLQYNINEVIASLGCTVELQINNTRSAWRVSTAPLRAVFKDMLSSKDSLKTEIANV
                     STSFEDLDAQVESNIGYSPEDKDMDTAPGTKALGTGTSRARLHLSTQMVYELKTKLRC
                     SHVVNKAILSCYRWFDKKHQRCMQRIQVPLLNSLLCLPMKFKFFCNIAKVMEIWCHKR
                     IPVEGNFGQTYDSVNQSIHGLSGEFSANIDIKEQKQSAVVGLSTNWEHVSVEVRDYAH
                     QQEARLQWAVGLMHVLLSCTFLLVFHAAFSYMDNYNWDIRFDNIYISTYFYQIDARRK
                     KLGKQSLLPLRKAEKTSVIFPLKATIQATEMRNVIRELLETLPILLLLLVLFAIDWVL
                     YSIFDTIGHHSFVQYSFRSSHKLEINVEGDSILARLLRKTIGALNTTSDTEMETNNMP
                     CLPRAVGLSAGGYFRASLPTCLLMCVCLAQAFGYRLRRVIAAFYFPKREKKRVLFLYN
                     ELLRKRSAFTKLRRAAIVRRARQQTTPRPPVVDALYRRCPLLRRLTRRRCVVCQALET
                     PESYVCPTPDCKALYCRSCWDDMQRQCPVCTPREELSSSAHSDSNDDTVYGE"
ORIGIN      
        1 gggctgtgtg tgaagcaaag cacacgggcg acatgtcctt cctctcatca acatttcaca
       61 gcctgggaat ctttgaaaag atttctggga taaaagaggc tctcaagaat aggctactgg
      121 acattacaca gcgtcagtac cgagcaggag ggcaacaaag gaaacggccc cacaccatca
      181 tacaggggct cctacgctgg ggtcttccag tttcctggag ccggttcctg tggcgccagc
      241 caggagagtt cccagtcact gctttcctgc taggaacagg cacgggtggg ctcctggcca
      301 taggtctctt tcagctcttg gtgaacccca tgaacattta cgaggagcag aaggtggtgg
      361 cgttgtatgg cttgacaagc ttgggggcca taggctgggg catctcccct cacatccgct
      421 gtgccagtct cctgttggta cccaagatgc tgggcaaaga aggcagactc tttatcatgg
      481 gatatgctct ggcttccatc tacaaagggc cggtggccaa tctacagtac aacatcaatg
      541 aggtgatagc atccctgggc tgcaccgtgg agctgcaaat caacaacacc cgatctgcct
      601 ggcgcgtctc cacggcccct ctgcgggcag tgttcaagga tatgctgagc agcaaagact
      661 cactgaaaac agagattgca aacgtctcga cctcctttga ggacctggat gcccaggtgg
      721 agagtaacat tggctactca cctgaggaca aggacatgga cacagcccca ggcacgaagg
      781 ccctcggaac cggaacctcc agagccagac tccacctgtc cacacagatg gtgtatgagc
      841 tgaagaccaa gctgcgctgt tctcatgtag tgaataaggc catactgagc tgctaccgct
      901 ggtttgacaa aaagcatcaa cggtgcatgc aacgcatcca ggtcccactc ctgaacagcc
      961 tgctctgcct gccaatgaag ttcaagttct tctgtaacat tgccaaggtg atggagatct
     1021 ggtgtcacaa acgcatcccc gtggaaggca actttgggca aacctatgac tcggtcaacc
     1081 agtctattca tggtctgtct ggagaatttt cagccaatat tgacattaag gagcagaagc
     1141 agtctgcagt ggtgggtctc agcacgaact gggaacacgt gagcgtcgag gtgcgggact
     1201 atgctcacca gcaggaggcc cgtctgcagt gggctgtggg gctgatgcac gtgctcctgt
     1261 cctgcacctt cctgcttgtc ttccatgcag ccttctccta catggataac tacaactggg
     1321 acatccgctt tgacaacatc tacatcagca cctacttcta tcagatcgat gcccgcagga
     1381 agaagctggg caaacagagt ctgttgccac tccgcaaggc agaaaagaca tccgtcatct
     1441 tccctctcaa ggccactatc caggccacgg agatgcgcaa tgtgataagg gagctcctag
     1501 agacactgcc catcctcctc ctgctgctgg tgctgtttgc aatcgactgg gtgctctact
     1561 ccatctttga caccattggt caccactcct tcgtgcagta ctccttccgc agcagtcaca
     1621 agctggagat aaatgttgag ggagactcca tacttgccag gctccttcgg aaaaccatcg
     1681 gagctctgaa caccacctcg gatacagaaa tggagacaaa caacatgccc tgcctgcccc
     1741 gagccgtggg cctgtctgcc ggcggctact ttagagcctc actgccaacc tgcctgctta
     1801 tgtgtgtctg cctagctcag gcctttggct accgactccg gagggtcatc gcagccttct
     1861 acttccccaa gagagagaag aagcgggttc tcttcctcta caatgagtta ctgaggaaga
     1921 gatcagcttt cacaaagctg aggagggcgg ccattgtccg gcgggcacgg cagcagacca
     1981 ctccacgccc ccccgtggtg gacgcgctgt accgccggtg cccgctcctg cgccgcttga
     2041 cgcgtcggcg ctgcgtggtg tgccaggcac tagagacgcc cgagtcctac gtgtgtccca
     2101 cgccggactg caaggccctg tattgccggt cgtgctggga cgacatgcaa cggcagtgcc
     2161 cggtgtgcac gccccgcgag gagctctctt catccgccca cagcgacagc aacgacgaca
     2221 ctgtatacgg cgaatgaagg gatgctgccc atcttcttgt ttaataaagt gtgatgcacg
     2281 ctcctgtggc tggtgcttct cagggatcgg ggactgggtg atccggaaga atgggcccgc
     2341 acaacccgca cgaagtcggg ccacagaccg gacgcaggat ggagagaagg cgcgagcgag
     2401 ccttgtaggg ttcaagtcga tccctgta
//
