LOCUS       XM_039111253            2409 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus doublecortin domain containing 2B
            (Dcdc2b), mRNA.
ACCESSION   XM_039111253
VERSION     XM_039111253.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1014              JACYVU010000162.1  56505762-56506775   c
            1015-1042           JACYVU010000162.1  56502815-56502842   c
            1043-1044           "NN"               1-2
            1045-1191           JACYVU010000162.1  56502668-56502814   c
            1192-1338           JACYVU010000162.1  56502239-56502385   c
            1339-1378           JACYVU010000162.1  56502092-56502131   c
            1379-1514           JACYVU010000162.1  56501407-56501542   c
            1515-1618           JACYVU010000162.1  56500905-56501008   c
            1619-2409           JACYVU010000162.1  56499873-56500663   c
FEATURES             Location/Qualifiers
     source          1..2409
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2409
                     /gene="Dcdc2b"
                     /note="doublecortin domain containing 2B; The sequence of
                     the model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 2 bases in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 1 long SRA read, 1 Protein, and 96% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:682416"
                     /db_xref="RGD:1583476"
     CDS             764..1714
                     /gene="Dcdc2b"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: doublecortin
                     domain-containing protein 2B"
                     /protein_id="XP_038967181.1"
                     /db_xref="GeneID:682416"
                     /db_xref="RGD:1583476"
                     /translation="MAAKRILVYRNGDPFFPGHQLVVTQRRYPTMEAFLYEVTSAVQA
                     PLAVRALYTLSDGHPVTNLADLQNGGQYVAAGFERFHKIQGTLGDPCPYXVLCLSVFR
                     NGDLLSPPFSLKLSQTAIQDWEVVLKLLNEKATVQSGTVHKLCTLEGLPLSTGTALVN
                     GHYYVAVGEEEFKALPYMELLVPSPSLSRGCWCPPGLKYKAHRQRVQGHKAQAAQPSP
                     KESRETKPSVFYARSQQSLQPWSKLPPLSFASGVKGVYGAPYPRKETAGAQEVDEDEN
                     TCREEPVDQRAAETVEEALSAQHQPGPEAVAPTSTHTPPS"
ORIGIN      
        1 tggtgtgtct gaagacagct acattgtacg tacatatata tatatataga gagagatata
       61 gatatagata tatacaatct tttgaagaaa aaagagttca gagtttctca ctgggccttc
      121 ttgccaaccc cacgtaaatt ttgttccatc agtggtgctg agtctgtaaa ttgcccactc
      181 agtgaggctt ccgttggctg ctattaacgg accccagtcc acataccata ccttgatgct
      241 ttccttagtt acctgcatgt cagaacaggc tttggggaag ttttgagcct gtctcctttt
      301 atctcctgcc tctgaccagg acagattctg ggccatctga ttcacctccc actgacatgg
      361 gagtgtcatc cccagaacca gctagcaaca atgccaaggg aactagccat cctccttggg
      421 taacaggctc caggctggtt gctcttggtc tcagttgttt aaaggagccc aaaccttgga
      481 caagatggac atctctctct cactgagccc gagctcttcc tttcataatg gcgtcagacc
      541 aggctgaaca agggctagag tttttcactg caaagtcagt gaaaaagtga tcacacctgt
      601 cctgctatga ggcccatctg agaccctgaa ttcagggaaa tgctcccatc caaggtgctt
      661 gcagccttcc tggataagag ggcagaactc cacctttggc acatctccca gccctggctt
      721 agttgcttgg caacagctct gtgtctgaga gtgaggatac actatggcag ccaagaggat
      781 actggtgtat cgaaatgggg accccttctt tccaggccac cagctggtgg tgacccaacg
      841 ccgctacccc accatggagg ctttccttta tgaggtgaca tcagctgtgc aagccccact
      901 ggctgtacgt gccctctaca cacttagtga tggccaccct gtcaccaacc tggctgactt
      961 acagaacgga gggcagtatg tggctgctgg cttcgaacga ttccacaaga tccaagggac
     1021 tcttggagac ccttgccctt atnntgttct ttgtctcagt gtgttcagga acggggacct
     1081 gctaagtccc ccctttagtc tgaagctgtc ccagactgcc atccaggact gggaagtggt
     1141 cttgaagcta ctgaatgaga aggctacggt acagagtggg actgtacaca aactctgcac
     1201 cctcgagggg ctcccactgt ccacagggac tgctctggtg aatggccact actatgtggc
     1261 cgttggagaa gaagagttca aagccctccc atatatggag ctgctggtgc ccagcccctc
     1321 tctgtccagg ggctgctggt gtcctccagg ccttaagtac aaagcccaca ggcagagggt
     1381 ccagggccac aaggcccagg cagcccagcc ttctccaaag gagtccagag aaactaagcc
     1441 atccgttttc tatgccagat cccagcagtc ccttcagcca tggagcaagc tccctcctct
     1501 ctcatttgca tcaggagtta agggagtcta tggggctccg tacccgagga aggagacagc
     1561 tggggctcag gaagtagatg aggatgaaaa cacctgcaga gaggaacctg tggatcagag
     1621 ggcagcagag acagtagaag aggctttgtc tgcgcaacac cagcctgggc ctgaagctgt
     1681 agccccaacc tccacccata ctccaccatc ttaagtgctg ggagcttcag atagaaactt
     1741 cggacaacca ctcccagtca cctctagtcc ccagccctca gcaatgtgtt ctggagaagc
     1801 cacacctcct gggctcacag taggtgtggc ctcctcaccc ctcctcagtc acaggcgagc
     1861 aagttctatg gaagctactt ccttatgtga cccctgctca ggagcaggct cattacaata
     1921 aaatatttgc taagctttgt ttgttgtacg tttattgaga gctgctactg gccagatgtt
     1981 tgctgcagct aggtgctgct tggccacagc agtctactta cttgaggggc cggcagttga
     2041 gcattttacc cagggccagc ttggttttct tccagctgac actctgacgt aacccctctc
     2101 cctgaatccc accttcagtc agccaaagca ctgtaaggga gcttggaggc tcccagacac
     2161 tcctggttga gactgcagca gcccttccca cgtaggaggc gctgtgtgga tgcggacagt
     2221 ctagagcagg tcaggtaatg caggctgggt aacagctgcc tgcggtggca gcaggaggac
     2281 aagatggctg ctggggcaga ggcagctgag ggtggctgta cagtctccag tgctaaatac
     2341 tttgaatgtt tttttttctt tttggttttc aagacaggat ttctctacgt agccctagct
     2401 gtcctggaa
//
