LOCUS       XM_228172               3054 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus discoidin, CUB and LCCL domain
            containing 1 (Dcbld1), transcript variant X1, mRNA.
ACCESSION   XM_228172
VERSION     XM_228172.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_228172.11.
            
            On Jan 21, 2021 this sequence version replaced XM_228172.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3054
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3054
                     /gene="Dcbld1"
                     /note="discoidin, CUB and LCCL domain containing 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 7 ESTs, 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 137 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:309773"
                     /db_xref="RGD:1307211"
     CDS             143..1657
                     /gene="Dcbld1"
                     /codon_start=1
                     /product="discoidin, CUB and LCCL domain-containing
                     protein 1 isoform X1"
                     /protein_id="XP_228172.5"
                     /db_xref="GeneID:309773"
                     /db_xref="RGD:1307211"
                     /translation="MGTGAGGPGVLALLFAVCAPLRLQAEELGDGCGHIVTSQDSGTM
                     TSKNYPGTYPNYTVCEKIITVPKGKRLILRLGDLNIESKTCASDYLLFSSATDQYGPY
                     CGSWAVPKELWLNSNEVTVRFQSGSHISGRGFLLAYASSDHPDLITCLERGNHYSQEK
                     YSKFCPAGCRDVAGDISGNTKDGYRDTSLLCKAAIHAGIITDELGGQINLLQSKGISH
                     YEGILANGVLSRHGSLSEKRFLFTSPGMSITTVAIPSVIFIALLLTGTGIFAICRKKK
                     KKGNPFVSAEAQKTGCWKQIKYPFARHQSAEFTISYDNEKEMTQKLDLITSDMADYQQ
                     PLMIGTGTVTRKGSTFRPMDTDTEEARVNTEASSHYDCPHRPGRHEYALPLTHSEPEY
                     ATPIVERHLLRAHTFSTQSGYRVPGPRLTHKHSLSSGGFPPAAGATQIESYQRPASPK
                     PVGGGYDKPAAASSFLDSGDPASQSQMTSGGNDGYSAPRNGLAPLNQMAVTALL"
ORIGIN      
        1 ctcgcgggcg cgggcggccc acagggatcg gtgccgtgtg cccgcgccgc gccgggccgc
       61 ggaggaggct gccccaagcg ggcagcggcg gcgaaagccg ggccgggcgg ccgatcctgc
      121 gggtctggag tctggcgggg ccatggggac cggggccggt gggccgggtg tcttggcgct
      181 gctgttcgcc gtgtgcgctc cgctccgttt gcaggcggag gagctgggtg atggctgcgg
      241 gcacatagtg acatctcagg acagtggcac aatgacatct aagaattatc cagggactta
      301 ccccaattac accgtgtgtg aaaagatcat cacagtcccg aaggggaaga gacttattct
      361 gaggctgggc gatttgaaca ttgagtccaa gacctgcgct tccgactatc tcctctttag
      421 cagtgcgaca gatcagtatg gtccctattg tgggagttgg gctgttccca aagaactctg
      481 gctgaactca aatgaagtga cagtccgttt ccagagtgga tctcacattt ctggtcgggg
      541 ctttctcctg gcctacgcca gcagtgacca tccagattta ataacctgtt tggaacgagg
      601 caatcattat tcccaggaaa aatacagcaa attctgcccc gctggttgta gagacgtagc
      661 aggagacatt tctgggaata caaaagacgg ctacagagat acctctttat tgtgcaaagc
      721 tgccatccat gcagggatca tcacggatga actaggtggc cagatcaacc tgcttcagag
      781 caaggggata agtcactacg aaggaatcct ggccaacggt gtgctctccc ggcatggttc
      841 tctgtcagaa aagcgatttc tgtttacatc cccaggaatg agtataacaa cggtggctat
      901 tccgtcggtg atcttcattg ccctccttct gactgggacc gggatctttg cgatctgtag
      961 gaagaagaaa aagaaaggca atccatttgt gtcagccgag gctcagaaaa caggctgttg
     1021 gaagcagatt aaatatccct ttgccaggca tcagtcggcg gaatttacca tcagctatga
     1081 caacgagaag gagatgacac aaaagttgga cctcatcact agtgacatgg cagattatca
     1141 gcagcctctc atgattggca caggaacagt cacgagaaag ggctctacct tccggcccat
     1201 ggacacagac acggaggagg ccagagtgaa cactgaggcc agcagccact atgattgtcc
     1261 tcaccgccct ggccgccatg agtacgcact gcccttgact cactcagaac ctgagtatgc
     1321 cacacctatc gtggagaggc acctgctgcg agctcacacc ttctccacac agagcggata
     1381 ccgagtcccc gggcccaggc tcactcacaa acactccctt tcctctggag gctttcctcc
     1441 cgctgcagga gccacccaga ttgaaagcta tcagaggcca gcaagcccca agcctgtggg
     1501 tggcggctat gacaaaccgg ctgctgccag cagcttcttg gacagcggag accccgcctc
     1561 tcaatcacag atgacttccg gggggaacga tggttattca gcaccccgaa acggtctcgc
     1621 gcccctcaac cagatggcgg tgactgccct tttgtgaacc caatgtgaaa gaaacctgct
     1681 gtggtactga gcgcgcaccg ctgcgagtcc ctggaagaaa tgtcccagcg cgcatgtgtg
     1741 actcttcagg atcctagagg cgacctcact tactgtttac agaactgtgc ggctggtttt
     1801 gttccgatct ctccagcaga gccggttggt ttctgctggg ctagaacaag gagacttttc
     1861 tcattcgtct aactgtgatg ctgtgctata aaatgtgcaa tctgtacagt tatatttaac
     1921 acggattaac ctaacgaagt ttgtggtgtt tgttttctac acggggcttc aagggggaac
     1981 gcgggatttg aatagatgga gcccgcccgt gttcatgctt ctcggtgcgt ttggttatct
     2041 gacgctaagc agcaggtctg tttaaaacct tcgtgggttg tggcggctcg tttccttttt
     2101 gataaagtga aagcattttt acccttcttt ctccgggaag aaatgaaatt acttgaaaac
     2161 acataaagca cactggggtg ggggacggcc agcaatggtg gcccacgtac gcaagcaaga
     2221 ataccacttc ggcagctgca gcctggtttc ttagactttc cttgagagga gtagggaagc
     2281 ctagtgtcct ggggcctgtg tgggtcccgg ctgcaccctt agggaccaca ttctccaagg
     2341 aaagggccta gcctactgcg catcttccca agcaaatatg cgtccacact gtccacccac
     2401 gccttgtaat gaaggagctt atagctcaag gcaggaatat caaatatttc tacacctcag
     2461 attatgaaca cagctgaacc cagaagccct acttcctaca actttctcca gaagcaacgc
     2521 atgtggacga ctccctctct ctggaaagca aatggctctt tgaaatgtgt ttgtgccagt
     2581 gtcgaagcag agctctttta gcggagagct agtaactgcc ctggtgatgt aaagtgcagt
     2641 tttccccctg aacatgtgtg tattcataga gtagcccggg tctcagctgt acttcatgtc
     2701 ttgtgttgtt tttttttttt ttccagagtt tacttctcga atgaactggg gggttagagg
     2761 ggagggattt aacctctttc tgccaaagag gaaaaagtta tgtgtcttgt ttatttaaaa
     2821 aaaaaaaaaa caaaaacatg gaccaaaaac aaaacaaaaa agattctttc cttacaaatt
     2881 gtattataat cctatttgtg tgattgtcgt tttctgtgaa ttctgtgtta acatagggtg
     2941 ctgaaagctc gtggcagagt atctgctggt tgtagtggag gttaaaccat ttatgttatg
     3001 gagtttacct gattttgtat gtatactaat tgtaataaac tatgaaaaat caga
//
