LOCUS       NM_001107057            5563 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus DDB1 and CUL4 associated factor 7 (Dcaf7), mRNA.
ACCESSION   NM_001107057 XM_001081566 XM_221032
VERSION     NM_001107057.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5563)
  AUTHORS   Sircoulomb,F., Nicolas,N., Ferrari,A., Finetti,P., Bekhouche,I.,
            Rousselet,E., Lonigro,A., Adelaide,J., Baudelet,E., Esteyries,S.,
            Wicinski,J., Audebert,S., Charafe-Jauffret,E., Jacquemier,J.,
            Lopez,M., Borg,J.P., Sotiriou,C., Popovici,C., Bertucci,F.,
            Birnbaum,D., Chaffanet,M. and Ginestier,C.
  TITLE     ZNF703 gene amplification at 8p12 specifies luminal B breast cancer
  JOURNAL   EMBO Mol Med 3 (3), 153-166 (2011)
   PUBMED   21328542
  REMARK    Erratum:[EMBO Mol Med. 2011 Mar;3(3). doi:10.1002/emmm.201000121]
REFERENCE   2  (bases 1 to 5563)
  AUTHORS   Jin,J., Arias,E.E., Chen,J., Harper,J.W. and Walter,J.C.
  TITLE     A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2,
            which is required for S phase destruction of the replication factor
            Cdt1
  JOURNAL   Mol Cell 23 (5), 709-721 (2006)
   PUBMED   16949367
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC167045.1 and JAXUCZ010000010.1.
            
            On Sep 10, 2010 this sequence version replaced NM_001107057.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC167045.1, SRR26360172.767779.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1518              BC167045.1         1-1518
            1519-5563           JAXUCZ010000010.1  91492036-91496080
FEATURES             Location/Qualifiers
     source          1..5563
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..5563
                     /gene="Dcaf7"
                     /gene_synonym="RGD1305140; Wdr68"
                     /note="DDB1 and CUL4 associated factor 7"
                     /db_xref="GeneID:303602"
                     /db_xref="RGD:1305140"
     exon            1..366
                     /gene="Dcaf7"
                     /gene_synonym="RGD1305140; Wdr68"
                     /inference="alignment:Splign:2.1.0"
     CDS             229..1257
                     /gene="Dcaf7"
                     /gene_synonym="RGD1305140; Wdr68"
                     /note="WD repeat domain 68"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 7"
                     /protein_id="NP_001100527.1"
                     /db_xref="GeneID:303602"
                     /db_xref="RGD:1305140"
                     /translation="MSLHGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYN
                     NKVQLVGLDEESSEFICRNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGE
                     TETRLECLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVN
                     LVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYED
                     PQHHPLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAP
                     HSSCHICTAADDHQALIWDIQQMPRAIEDPILAYTAEGEINNVQWASTQPDWIAICYN
                     NCLEILRV"
     exon            367..525
                     /gene="Dcaf7"
                     /gene_synonym="RGD1305140; Wdr68"
                     /inference="alignment:Splign:2.1.0"
     exon            526..637
                     /gene="Dcaf7"
                     /gene_synonym="RGD1305140; Wdr68"
                     /inference="alignment:Splign:2.1.0"
     exon            638..756
                     /gene="Dcaf7"
                     /gene_synonym="RGD1305140; Wdr68"
                     /inference="alignment:Splign:2.1.0"
     exon            757..966
                     /gene="Dcaf7"
                     /gene_synonym="RGD1305140; Wdr68"
                     /inference="alignment:Splign:2.1.0"
     exon            967..1084
                     /gene="Dcaf7"
                     /gene_synonym="RGD1305140; Wdr68"
                     /inference="alignment:Splign:2.1.0"
     exon            1085..5563
                     /gene="Dcaf7"
                     /gene_synonym="RGD1305140; Wdr68"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgacatccc aaacggaagg tggtagtcgc tgcccgagct ggtttgaaac tggtggtccg
       61 gcccggccga gtgtgtgtgt gtagctgagg acctgctgga gggctaggcc gttcttgacc
      121 gcccgggccc cgcctcccct cggacccgcg gacccaagcc ccgctccccg cccgtcttgt
      181 gcctcagccc gctgcctctc cggccgtctc tgcggcccag ccgccaccat gtccctgcac
      241 ggcaaacgga aggagatcta caaatatgaa gcgccctgga ctgtgtacgc catgaactgg
      301 agcgtgcggc cggacaagcg ctttcgcctg gcgctgggca gcttcgtgga ggagtacaac
      361 aacaaggttc aacttgttgg tttagatgag gagagttcag agtttatttg ccgaaacacc
      421 tttgaccacc cataccctac cacaaagctc atgtggattc ctgacacaaa aggcgtctat
      481 ccggaccttc tggcaacaag tggcgactat ctccgtgtgt ggagggttgg cgaaacagag
      541 accaggctgg agtgcttgct aaacaataac aagaattcag acttctgtgc tcccctgacc
      601 tcctttgact ggaatgaggt ggatccttac cttctaggaa cctcaagcat tgacacgacc
      661 tgcaccatct ggggcctgga gaccgggcag gtgctaggac gagtgaacct tgtgtctggc
      721 catgtgaaga cccagctcat tgcccatgac aaagaggtct atgacattgc gttcagccga
      781 gctggaggtg gcagggacat gtttgcctct gtgggtgctg acggctctgt gagaatgttc
      841 gacctccgcc atctggaaca cagcaccatc atttatgaag acccacagca ccaccccctg
      901 cttcgcctct gctggaacaa gcaggacccc aactacctgg ccaccatggc catggatgga
      961 atggaggtgg tgattctgga tgtccgagtt ccctgcacac cggttgccag gctaaacaac
     1021 caccgagcat gcgtcaatgg cattgcctgg gccccacact cgtcctgcca catctgcact
     1081 gcagcggatg atcatcaggc cctcatctgg gacatccagc agatgcctcg ggccatcgag
     1141 gaccctatct tggcctacac agctgaaggg gagatcaaca atgtgcagtg ggcctcgacc
     1201 cagcctgact ggatcgccat ctgctacaac aactgcctgg agatcctccg cgtgtagtgt
     1261 tggcacctca ccgactaggc aggggctgtg tgcttcagcc tctgccccct tccttcccac
     1321 gtaagaagag ttcccagtgg ccagtatgtc tactgttgct ttaacccact gtgtccagaa
     1381 gctgctgtag aagtccaggc cagttacccc gctgtctgtg ttggactgtg ctgtgtggca
     1441 ccaccgcggc ccagggctgg gttttaagtt ttcactcctt tcctcctctt tgcttcttca
     1501 attaaacgtc tctgtgtatt tgtttgtcag ctgttggttc atgaacagta caagcactgg
     1561 ctctgtctgt ctgtctgctg ctgaggcagt cgtctgtccc ctgtccctat gtgttgtgct
     1621 agcacttaag tgggaacaaa gaccaacttc agactgtctt tcctcctggc accagttctt
     1681 taacaaacct caactttgta tgtttttatc tgtcaggcta ggtttttatg aaaagaattt
     1741 aaccttcctg gtttcttgat ttcacaggtt tccctctttg taccgtcctc tcttccctca
     1801 gtgcctgcag tgggtactgg accctagacc ccacgagcag tttgctctcc tgcctacagg
     1861 gcacacccct gaccaggagt tggcagctgc gctggtgctc tgaagtctgt tgactcacca
     1921 acctttcctc agcctgttcc accctcaggt tcctttctct ggcttcacta attgagtacc
     1981 cagtggggtt gacataaggg ccatgctgag ggagaatcgt tttcaggaaa gctgaactta
     2041 cattgtgttt ccagtatggt ttcagaatct atttttccag tttagaactt gaatgatagg
     2101 caaaagagat ctctaagcta agctgtgttt ctgtttgttg agtttcctct ccctggttgg
     2161 atactgtccc atctttggat taagtgctct aaataagaga cttcctgaga ggtattgtct
     2221 gtgcttgacc ctaaacaaga tttttagact gagatagaca ggcagttctc gtaagtgagg
     2281 agctcatcag ttgtggtgat cccagggtag ccgtctaatt gtccacacct gtgcacttgc
     2341 cctctcctca gttaaggttc tgagcagtat tcaactttgt aggctgcagt tggccaagct
     2401 gacttacagg ccttgtgtgt cttgtttccg ttacacgaat gggttccaca gaggggactt
     2461 gtatgtagtt ctgactttag atgagtccct ggcagagtct gcagcatggc ctgggagaat
     2521 gtgccgggct tgtattctgc taagctgctt gcagatttct tagatgtgct ggtatgagga
     2581 gagtagcagg cctgaaagct gatagatggt tttggctatt cacactgcca ttgttggaga
     2641 agtaaatgct gatccagtct tctgagaaca tgggctctct ggctggtcaa atgcttgagg
     2701 ttaatgttcc tgcactaacc tgtgactcgc ccgtatcggt gtggttacct cgtctcttag
     2761 tgacctttcc tagcgaggcg cagacacctc aagggtagca ggcttgctgc tgtaggagcc
     2821 ctcggtttct tcttgggctg agtctcagta gaagtcaggg tggttgcagg gcttgtggag
     2881 aagacctatg ctgggcaaca cctctgttct ggatggactt taacttggcc tgagtgaaca
     2941 aagctttaaa aggctagcag cagttactag aatacattta tatgaggtag ctatgtgctt
     3001 tggaaaccaa ccacttgtga tggtgtgtcc cttgatctgt ggacacttag caactttgtt
     3061 cagtcttcct ctcgcctgcc atctggttta ggtaagactc ttgctatctc tgtctccaag
     3121 tacacatgta cccacggttg cagggtcgct ggcattttaa gtgccagctt tctcactctc
     3181 tctctataga atgcacaggt ggcccctgtg gctgaggaag agatttttgt agccatgaga
     3241 ggcagaaagt tcttaagtct gttcccttcc ctgaaacaca gctatgttaa agtttcaaag
     3301 ccagactctg ttaatatttg ccaggtctta gactgacagt gaggtgggtc aggatctcca
     3361 gatctgttct ctggactcca ggccctggtg tggctgcagt gctgttttga catttggcag
     3421 gctaagctag aggctctggc ccgtgctttc tttgtctgct gtatgggagg ctgcatgatc
     3481 aatcagacta gcagagagct gaactggtaa atgggtctga ggcttttgtg ggcttgagct
     3541 tttcttactg gagattgata tctttcctgg acctgcaagg ctagggcttg aggaggcgac
     3601 acatgacaag taggtggtga ctttctctcc aaatcagaat taggtcgcag ataactggca
     3661 acagctcagg aagaatatga gaaaagacag agtcctatag tgttttgatg attgttacaa
     3721 ctaaaatttg gtattttaag gtaaaggaga aggaaatact agagaacaca gagagtctga
     3781 ggggagaaac attgagattg tctctcatag ctgtggagtg aacttgtgtc tcagcctggg
     3841 ttggcctttc tgcaccatta agggagctta tgtgtcactg ggtaccagga gggtgacagc
     3901 tgggggcaga gagcccttct tgctataggt gatatctgga ggttaaattc taggtattgg
     3961 gtatcctgtg acagtacatg atgacattgt tttaatttgt ttaagaccag gctgtctttg
     4021 aactgaggac cttctttctc tagtctccct aagtgctggg gtcacagaca tgtgccactg
     4081 ccccagcatc catgaatctt cttgaagatc catttctccc tttatcttcc ctaacctttt
     4141 catttttcta ctttgtgtgt gtgtggtgat ggggatcaga cgtcggccct cacatgctgg
     4201 gcgagtgttc taccactgaa ccacaccctc cagccccttc cttgtctttc ctcttcccct
     4261 ttcttattgc atttctacta tagaatgatc tccctgatac atcctgggcc ataaggaaat
     4321 gtaggactct ggggtttact aaacatggtg ggcagtccaa agctgtgccc tatttcccca
     4381 ttgtgaaaat atggcagttc ctttgattac ctggcttagg ccagagtacc attgcaggag
     4441 aggcctcagg gcctgcactc gggatgagga aggtggggta tattcagcat tgggtttctg
     4501 agaggagagc tgatctgagc agttaccatg aaccctgagg cagggttccc agagttgtcc
     4561 tctctgctcc ggtgaggcag caactgaggg tctcatgtct ccagtcttgt tcacctcaag
     4621 ccatctacat tctctctttc tgccatactg tcattgctgc taatggtcag agtcaagcat
     4681 gtggcattac agaatgagca ggtggtcttg ggctgctatc cggacatcac tttttaaatg
     4741 tggaaacatg cagatgactt ctccaagagg cttaggctaa tgtgtcagcc agaaacagta
     4801 ggctaagaga agcttgaact ccagaagaaa gctgttgaca ttctgtgtga cagctggaaa
     4861 atgtataagc acccgccctt gagacaactc agtgaagccg aactgtgcta tccgccattt
     4921 gatagaaatg ttctcacctt gggctgactg tgatgtacaa tgtgttatga aaattgtcga
     4981 gctgaagctt tagtcaaata cgagtcactt gctttgatcc cgtgtatttt atgattcctc
     5041 tgtcagtgac tttccctcgc cttaccctga gtgtgaattg tagcatgatt gtataaacct
     5101 ctatgtagaa aatggagatt tcatgttcta caaaatgtta agctctaact gatccatttc
     5161 tgtgttctct atagcctcat gtgtatgacc tcactttctt atctatttaa actttccttc
     5221 tgttctaaag ctttcgtagc acccctgttc aggtggagag gaagctgtct ctttgcagaa
     5281 ccgtactgta accatttctc ctttataaat attattttca cagggctgat tgtatacagg
     5341 gcttgtaata aaattttaac actgtgttgt gaatgagctg cggtttctcc gctggaggtg
     5401 acttcaaaag cacctgaggg tggagcgttc tttctgtgac cttacttcct agtacgtgaa
     5461 gtctaatctc acagtcttgt tctgtttcag tctcctgtat aagaagtacc atattttctg
     5521 cccatcatac tttgtaataa aacttgaaca tgtatagatt gaa
//
