LOCUS       NM_001305159            3134 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus DDB1 and CUL4 associated factor 6 (Dcaf6), mRNA.
ACCESSION   NM_001305159 XM_006221535 XM_006250200
VERSION     NM_001305159.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3134)
  AUTHORS   Jin J, Arias EE, Chen J, Harper JW and Walter JC.
  TITLE     A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2,
            which is required for S phase destruction of the replication factor
            Cdt1
  JOURNAL   Mol Cell 23 (5), 709-721 (2006)
   PUBMED   16949367
REFERENCE   2  (bases 1 to 3134)
  AUTHORS   Tsai TC, Lee YL, Hsiao WC, Tsao YP and Chen SL.
  TITLE     NRIP, a novel nuclear receptor interaction protein, enhances the
            transcriptional activity of nuclear receptors
  JOURNAL   J Biol Chem 280 (20), 20000-20009 (2005)
   PUBMED   15784617
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000244.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001305159.3.
            
            On Feb 10, 2021 this sequence version replaced NM_001305159.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments and orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-300               JACYVU010000244.1  8447849-8448148     c
            301-362             JACYVU010000244.1  8428047-8428108     c
            363-455             JACYVU010000244.1  8423221-8423313     c
            456-641             JACYVU010000244.1  8421572-8421757     c
            642-755             JACYVU010000244.1  8418901-8419014     c
            756-891             JACYVU010000244.1  8416604-8416739     c
            892-1106            JACYVU010000244.1  8411519-8411733     c
            1107-1200           JACYVU010000244.1  8406274-8406367     c
            1201-1320           JACYVU010000244.1  8404441-8404560     c
            1321-1578           JACYVU010000244.1  8402576-8402833     c
            1579-1696           JACYVU010000244.1  8374812-8374929     c
            1697-1812           JACYVU010000244.1  8370078-8370193     c
            1813-1881           JACYVU010000244.1  8369584-8369652     c
            1882-2203           JACYVU010000244.1  8369047-8369368     c
            2204-2342           JACYVU010000244.1  8358133-8358271     c
            2343-2499           JACYVU010000244.1  8356531-8356687     c
            2500-2588           JACYVU010000244.1  8355098-8355186     c
            2589-2694           JACYVU010000244.1  8351985-8352090     c
            2695-3134           JACYVU010000244.1  8346951-8347390     c
FEATURES             Location/Qualifiers
     source          1..3134
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q23"
     gene            1..3134
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /note="DDB1 and CUL4 associated factor 6"
                     /db_xref="GeneID:289181"
                     /db_xref="RGD:1561961"
     exon            1..300
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     CDS             204..2759
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /note="IQ motif and WD repeats 1"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 6"
                     /protein_id="NP_001292088.1"
                     /db_xref="GeneID:289181"
                     /db_xref="RGD:1561961"
                     /translation="MSRSGSCPHLLWDVRKRSLGLEDPSRLRSRYLGRREFIQRLKLE
                     ATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRANIFSAKF
                     LPCTDDKQIVSCSGDGVIFYTNIEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSC
                     GEDGTVRWFDTRIKTSCTKEDCKDDILINCRRAATSVAICPPVPYHLAVGCSDSSVRI
                     YDRRMLGTRATGNYAGRGTTGMVARFIPSHLSNKSCRVTSLCYSEDGQEILVSYSSDY
                     IYLFDPKDDTARELKTPSAEERREELRQPPVKRLRLRGDWSDTGPRARPESERERDGE
                     QSPNVSLMQRMSDMLSRWFEEASEVAQSNRGRGRPRPRGGTNEPDVSALPTVPSSPNL
                     EVGETAMDVDTPAALLQPSTSSTGSVQAQAAAAAIESPRSTSLLSSPDSEPRQPVEAS
                     GHHTHHQSDNNNERLSPKPGTGEPVLSLHYSTEGTTTSTIKLNFTDEWSSTASSSRGN
                     GSHCKSEGQEECLVPLGSVQPPEGDSETRAPEEPSEKGTFSENLTQNQIDTAQFDNFP
                     TEPLDSNSGERNNPSLDSPCGVPEEGTLSETDRETCEQTSTDSATRRASDNPELPSQT
                     EAIAPSAHEDPSARDSALQDTDDSDDDPVLIPGARYRAGPGDRRSAVARIQEFFRRRK
                     ERKEMEELDTLNIRRPLVKMVYKGHRNSRTMIKEANFWGANFVMSGSDCGHIFIWDRH
                     TAEHLMLLEADNHVVNCLQPHPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVIT
                     RNELMLEETRNTITVPASFMLRMLASLNHIRADRLEGDRSEGSGQENENEDEE"
     exon            301..362
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            363..455
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            456..641
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            642..755
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            756..891
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            892..1106
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            1107..1200
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            1201..1320
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            1321..1578
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            1579..1696
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            1697..1812
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            1813..1881
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            1882..2203
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            2204..2342
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            2343..2499
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            2500..2588
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            2589..2694
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
     exon            2695..3134
                     /gene="Dcaf6"
                     /gene_synonym="Iqwd1; RGD1561961"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgagcagt ggcccgggtg cctctccgct cccggggaga aggcgcggcc gtggctgccg
       61 ccctctaagt cgcggcgcca gcgaggcccg gcgcgcgcat ggtgctggtg ccgctcgggt
      121 gttgatcggc ctgtcccctc cctctcttcc cctccccacc ccccgcggtg gtctcccctt
      181 tccaccccag ccccagcaga gccatgtctc ggagtggctc ctgcccgcac ctgttgtggg
      241 acgtgaggaa aaggtccctt gggctggaag acccgtcccg gctgaggagc cgctacctgg
      301 gaagaagaga atttatccaa agattaaaac ttgaagcaac tttaaatgtg catgatggct
      361 gtgttaatac aatctgttgg aatgacactg gagaatatat tttatctggc tctgatgaca
      421 ctaaacttgt aattagtaat ccgtatagca gaaaggtttt gacaaccatc cgctcagggc
      481 accgagcaaa tatatttagt gcaaagtttt tgccgtgcac agatgacaag cagattgtgt
      541 cttgctctgg agatggagtc atattttaca ccaacattga gcaagatgca gaaaccaaca
      601 gacagtgcca atttacgtgc cattatggaa ctacttacga gattatgact gtaccaaacg
      661 acccttacac cttcctgtcc tgtggtgaag atggaaccgt taggtggttt gacacgcgca
      721 tcaaaaccag ttgcacaaaa gaagactgca aagatgatat tctaatcaac tgtaggcgtg
      781 ctgccacatc tgtggctatc tgtcccccag taccgtatca ccttgccgtg ggctgttctg
      841 acagctccgt acggatttat gatcggcgaa tgctgggcac aagagctaca gggaattatg
      901 caggtcgagg aactactgga atggttgctc gctttatccc ttctcatctt agtaataaat
      961 catgcagagt gacatcgctg tgttacagtg aagacggtca agagattctt gtcagttact
     1021 cttccgatta catctatctt tttgacccca aagatgatac agcacgagaa cttaaaactc
     1081 cttctgcaga ggagaggcgg gaagagttac gacagccccc agttaagcgc ttgagacttc
     1141 gtggtgattg gtcagatact ggtcccaggg cacggccaga gagtgaacga gaacgagatg
     1201 gagagcaaag tcccaatgtg tcattgatgc agagaatgtc ggatatgtta tcaaggtggt
     1261 ttgaagaagc aagtgaagtt gcccagagca acagaggaag aggaagaccg cggcccagag
     1321 gtggaacaaa tgagccagat gtctcagccc ttcctacggt gccatcgagc cctaatttgg
     1381 aagtgggtga aactgcaatg gatgtagata cgccagctgc acttcttcag ccttctacgt
     1441 cctctaccgg gtcagttcag gctcaggcgg ctgcagctgc catagaaagc cctcgttcca
     1501 cctctttgct gtcttctcca gatagtgaac caaggcagcc tgttgaggcg tctggccacc
     1561 atacacatca tcaatctgat aacaataatg aaaggctgag ccccaaacca gggacaggtg
     1621 aaccagtttt aagtttgcac tacagcacag aaggaaccac gacaagcaca ataaaactga
     1681 acttcacaga tgaatggagc agcacagcct caagttccag aggaaatggg agccactgca
     1741 aatctgaggg tcaggaggaa tgcctggtcc cactgggctc tgtgcagcca cccgaaggag
     1801 acagtgaaac aagagctcct gaagaaccat cagagaaagg aacattttca gaaaacctca
     1861 ctcaaaacca gatagataca gcacaatttg ataatttccc cactgagcca ttggattcta
     1921 actcaggaga aaggaataac ccaagtcttg acagcccttg tggggttcca gaagaaggca
     1981 ctttgtctga gacagacagg gagacttgtg agcagaccag cactgacagt gctaccaggc
     2041 gtgccagcga caatcctgag ctcccatccc agacagaagc catagcccct tcagctcatg
     2101 aagacccatc tgccagggac tctgctctcc aggacacaga tgacagcgat gatgacccgg
     2161 tcttgatccc cggtgcaaga taccgagcag gacctggtga taggcgctcc gctgtcgccc
     2221 gcattcagga gttcttcagg aggagaaaag aaaggaaaga aatggaagaa ctggatactt
     2281 tgaacattag gaggccacta gtaaagatgg tttataaggg ccaccgcaac tcccggacaa
     2341 tgataaaaga agccaatttc tggggtgcta actttgtaat gagcggttcc gattgtggcc
     2401 atatcttcat ctgggaccgg cacactgctg agcatttgat gcttctggaa gctgataatc
     2461 acgtggtcaa ctgcctgcag ccccatccat ttgacccaat tctagcctca tctggtatag
     2521 attatgacat aaagatctgg tcgccactag aagagtcaag aatttttaat cgaaaacttg
     2581 ctgatgaagt tataactcga aatgagctca tgctggaaga gactagaaac accatcaccg
     2641 tcccggcctc tttcatgttg aggatgttgg cgtcactgaa tcatatccga gctgaccgtc
     2701 tggagggtga cagatcggaa ggctcaggtc aggagaatga aaatgaggat gaagaataaa
     2761 caccttcttg gcaagcactt agatgttctg agtttgtata cgacatttat tatatttttt
     2821 ctttacagaa ctttagtgca atttaaggct atgggttttt tttgtttttt tttttttttt
     2881 tttttttttg gagttcttcc ccatttttgg gataaccaaa cgttggtttg gaatgagtgt
     2941 gtgcatgagt tgggagagtg tgtaaaacaa aacaagcaaa acgtttttga aactttttgc
     3001 cgtgtatgga atcctaaaga aatgcaaagt gcaatactcc ctaaccctca gccgtgggcg
     3061 cctggatcag tgttgagtca tttcattgtg gtgggaatgt tggttcaaat aaatttctac
     3121 acttgccatt tgca
//
