LOCUS       NM_001100718            5497 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus DDB1 and CUL4 associated factor 5 (Dcaf5), mRNA.
ACCESSION   NM_001100718 XM_001080939 XM_234345
VERSION     NM_001100718.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5497)
  AUTHORS   Jin,J., Arias,E.E., Chen,J., Harper,J.W. and Walter,J.C.
  TITLE     A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2,
            which is required for S phase destruction of the replication factor
            Cdt1
  JOURNAL   Mol Cell 23 (5), 709-721 (2006)
   PUBMED   16949367
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On or before May 13, 2010 this sequence version replaced
            XM_001080939.2, XM_234345.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.829553.1,
                                           SRR26360172.1620212.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760389,
                                           SAMEA5760393 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-232               JAXUCZ010000006.1  104992800-104993031 c
            233-376             JAXUCZ010000006.1  104966815-104966958 c
            377-413             JAXUCZ010000006.1  104963351-104963387 c
            414-553             JAXUCZ010000006.1  104962321-104962460 c
            554-683             JAXUCZ010000006.1  104961216-104961345 c
            684-897             JAXUCZ010000006.1  104940976-104941189 c
            898-964             JAXUCZ010000006.1  104929125-104929191 c
            965-1092            JAXUCZ010000006.1  104915407-104915534 c
            1093-5497           JAXUCZ010000006.1  104904423-104908827 c
FEATURES             Location/Qualifiers
     source          1..5497
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..5497
                     /gene="Dcaf5"
                     /gene_synonym="Wdr22"
                     /note="DDB1 and CUL4 associated factor 5"
                     /db_xref="GeneID:314273"
                     /db_xref="RGD:1306535"
     exon            1..232
                     /gene="Dcaf5"
                     /gene_synonym="Wdr22"
                     /inference="alignment:Splign:2.1.0"
     CDS             19..2859
                     /gene="Dcaf5"
                     /gene_synonym="Wdr22"
                     /note="breakpoint cluster region protein, uterine
                     leiomyoma, 2; WD repeat domain 22; DDB1- and
                     CUL4-associated factor 5-like"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 5"
                     /protein_id="NP_001094188.1"
                     /db_xref="GeneID:314273"
                     /db_xref="RGD:1306535"
                     /translation="MKRRAGLGGSMRSVVGFLSQRGLHGDPLLTQDFQRRRLRGCRNL
                     YKKDLLGHFGCVNAIEFSNNGGQWLVSGGDDRRVLLWHMEQAIHSRVKPIQLKGEHHS
                     NIFCLAFNSGNTKVFSGGNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFAS
                     SSDDGRVLIWDIRESPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIR
                     KPQSSLLRYGGNLSLQSAMSVRFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGY
                     FNSCTMKSCCFAGDRDQYILSGSDDFNLYMWKVPADPEAGGLGRVVNGAFMVLKGHRS
                     IVNQVRFNPHTYMICSSGVEKIIKIWSPYKQPGCTGDLDGRIEDDSRCLYTHEEYISL
                     VLNSGSGLSHDYANQSVQEDPRMMAFFDSLVRREIEGWSSDSDSDLSESTILQLHAGV
                     SERSGYTDSESSASLPRSPPPTVDESADNAFHLGPLRVTTTSAVVSTPATPTCEDAAS
                     RQQRLSALRRYQDKRLLALSNESDSEENVCEAELDTDLFPRPRSPSPEDGSSSSSSST
                     SSEDEEELNQRRANTRQRNAMRRRQKTAREERPNAPVKSTNTYIGEDNYDYPQIKVDD
                     LSSSPNSSPERSTSTLDIQPSRAPPAANMESVERKIYKAYKWLRYSYISYSNNKDGET
                     SLVTEEADEGRAGTSHKDNPTPSSSKEACLTATTQRSQDQSPEGCSSDACKEGTSARN
                     PNSGASHEHSGHPWAEVPEGTSQDANNSGSLEHSFETKKLNGKALCKALSSRAEEPSS
                     PPVPKASGSTLNSASGNCPRTQSDDSEERSPDTVCANHNNGRLHPRPLHPHNNGQNSG
                     ELESVACSSPGHLDTDHDSPSLTGTLLHKDCCGSEMACETSTAGMREDPTDPSAMDSS
                     KVVHGQSGLKRHRIELEDTDSENSSSEKKLKT"
     exon            233..376
                     /gene="Dcaf5"
                     /gene_synonym="Wdr22"
                     /inference="alignment:Splign:2.1.0"
     exon            377..413
                     /gene="Dcaf5"
                     /gene_synonym="Wdr22"
                     /inference="alignment:Splign:2.1.0"
     exon            414..553
                     /gene="Dcaf5"
                     /gene_synonym="Wdr22"
                     /inference="alignment:Splign:2.1.0"
     exon            554..683
                     /gene="Dcaf5"
                     /gene_synonym="Wdr22"
                     /inference="alignment:Splign:2.1.0"
     exon            684..897
                     /gene="Dcaf5"
                     /gene_synonym="Wdr22"
                     /inference="alignment:Splign:2.1.0"
     exon            898..964
                     /gene="Dcaf5"
                     /gene_synonym="Wdr22"
                     /inference="alignment:Splign:2.1.0"
     exon            965..1092
                     /gene="Dcaf5"
                     /gene_synonym="Wdr22"
                     /inference="alignment:Splign:2.1.0"
     exon            1093..5497
                     /gene="Dcaf5"
                     /gene_synonym="Wdr22"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcggcggcg gttccagcat gaagaggaga gctggcctgg ggggcagcat gaggtcagtg
       61 gtgggcttct tgtcccagcg gggcttgcat ggggaccccc tgctcactca ggactttcag
      121 aggagacgcc tgcggggctg cagaaacctc tacaagaagg accttctcgg ccacttcggc
      181 tgtgtcaatg ccattgaatt ctccaacaat ggaggccagt ggctggtctc aggaggagac
      241 gaccgccgag ttctgctatg gcacatggaa caagctatcc attccagggt caaacccata
      301 cagctgaaag gggagcacca ttccaacatt ttctgcctgg ctttcaacag tgggaacacc
      361 aaagtattct ccggaggaaa tgatgagcaa gtcatcctcc atgatgttga aagcagtgag
      421 accctggatg tgtttgctca tgaagatgca gtatatggct tgtcagtgag cccagtgaat
      481 gacaacattt ttgccagctc ttcagatgat ggccgggttc tcatttggga tatccgggag
      541 tctccccatg gagagccctt ctgcctggca aactatccat cagcctttca cagtgtcatg
      601 tttaaccctg tggagcccag gttattggcc acagccaatt caaaggaagg agtgggactc
      661 tgggacatta gaaagcctca gagttctctc ctgcgctatg gtggcaacct gtctctccag
      721 agcgccatga gcgtgcgatt caacagcaac ggaacccagc tcctggcact gcgccgccgc
      781 ctgcctcctg tcctctacga tatccactca cgcctgccag tgttccagtt cgacaatcag
      841 ggttacttca actcttgcac tatgaagagc tgctgttttg caggggatcg tgaccagtat
      901 atcctttcag gctctgatga cttcaacctg tacatgtgga aggtccctgc agatccagaa
      961 gccggtggcc ttggcagggt ggtcaatgga gccttcatgg tgctgaaagg gcatcggtcc
     1021 atcgttaacc aggtccgctt taacccccac acctatatga tctgctcttc tggtgtggag
     1081 aagattatca agatctggag cccatacaag cagccaggat gtacaggaga cctcgatggt
     1141 cggattgaag atgattcccg ctgcctctac acccatgaag agtacatcag ccttgtactg
     1201 aacagtggga gtggcctgtc ccacgactac gctaaccagt cggtccagga agacccccgg
     1261 atgatggctt tctttgactc tttggtgcgc cgtgaaatcg agggctggag ctcagactca
     1321 gacagtgacc tcagcgagag tactatcctt cagctgcatg cgggcgtcag tgagcgctct
     1381 ggctacactg actcggagtc ctcagcctca ctgccccgct ccccacctcc cacagtggac
     1441 gagtctgctg acaatgcctt ccacctgggg cccctgcgag tcaccaccac aagtgcagtg
     1501 gtatcaaccc cagcaacgcc aacatgtgag gatgcggcct ctcgacagca gcgcctgtcc
     1561 gctctgaggc gctatcagga caaacgcctc ctggccctgt ccaatgagtc tgattctgaa
     1621 gagaatgttt gtgaggctga actggacaca gatctcttcc ctcggccacg gtcacccagc
     1681 cctgaggatg gatctagcag ttccagcagc tccactagct ctgaggatga agaagaactg
     1741 aaccaacgcc gagccaacac ccggcagcga aacgccatgc ggaggcgaca gaagacagcc
     1801 cgggaagagc ggcccaatgc tccagtcaaa tccaccaaca cctacattgg agaggacaat
     1861 tacgactacc cacagatcaa ggtagatgac ctctcctcct ccccaaactc ctcccctgag
     1921 cgtagcactt ccactctgga tattcagcca agccgggcac caccagctgc caacatggaa
     1981 tcagttgagc gtaagattta taaagcttac aaatggctcc gctactccta catctcttac
     2041 tcaaataaca aagatgggga aacctcccta gtgacagagg aagcagatga aggaagagca
     2101 ggaaccagcc acaaagacaa cccaacccct tcttccagta aggaagcctg tctaacagcc
     2161 acaacccaga ggagccagga ccagtctcct gagggctgca gcagtgatgc ttgcaaagaa
     2221 gggacgtctg ctagaaatcc caacagcggt gcaagccacg agcacagcgg ccatccttgg
     2281 gcagaggtgc cagagggcac ctctcaggat gctaacaaca gtggctctct ggaacactct
     2341 tttgaaacca agaagctcaa tggaaaggct ctgtgcaagg ccctgagcag tcgggctgag
     2401 gagccatcct cccctcctgt ccccaaggca tcgggctcca ctctcaacag tgcatctggc
     2461 aactgtccca ggacccagtc tgatgacagt gaggagagga gccctgacac cgtctgtgcc
     2521 aaccacaaca atggacgctt gcaccccaga ccccttcacc cccacaacaa tgggcagaac
     2581 tctggggagc tggagtcagt ggcctgctct tccccaggac acctagacac tgaccatgat
     2641 agcccatccc tgacagggac actcctacac aaagattgtt gtgggtctga gatggcctgt
     2701 gagacctcaa ctgctggaat gagagaggac cccactgacc cctcagccat ggacagcagc
     2761 aaggttgttc atggccaaag tggcctcaaa aggcaccgaa ttgaattgga agacacagat
     2821 tcagagaatt cctcctcaga gaagaaatta aaaacatgat aaatacaaag ggaaaacaaa
     2881 agctacaaaa agtagcctta caaaataatt tttcttgttt agtgaacaca gaggaaagga
     2941 aaagtattaa aggcacataa aaccagggcc tgaaatgtgt ctgctgctgc tccttctgtt
     3001 agccactcac cagtggtcgg atgtctagct ggcactgcct cgtgctctgc tgagagcact
     3061 gccagcagct cttctctagt gagatgtagc atagcatccc tgtgcaggtt ctgttacgat
     3121 gagcccgtct tgggacattc ggcttgttct gtgtgtgtgt gcccaccggc acatgtgggc
     3181 ttgttgtctt aggagacctt tcttttaact gtccatcagc aaagacctgt gaatctgtag
     3241 cttttgccgt cacacctgtt cattgttcac atgacatggt gtcctggtcg taacagagtg
     3301 tctcttagat cagagtgtgc tgcagtgact tgtggattta tgtagcagaa aggagatgca
     3361 gatgaaagag gccttccttc agctcattgg ctgtgctgaa gaggaaaaca tggttccttt
     3421 tttaaatgct ccatgttttc tccagctcac atatcactga gcatttactg tggctctaag
     3481 tggaacgttg ctcttgctaa taagaggctg acactagagc tcagatcctg gtagtgtcgc
     3541 tgtgtacaga aggggcagag ctatgatacg tgctgtgagg tgcccgtaca atgactagtg
     3601 gacaacacaa ctttaatcat ttaggtgctg ggttcctaag aggcactcaa ggccagcagg
     3661 tgcttccttg gctccaggta atggagtcca ggcatactga aagaagaaag gtcccctcgc
     3721 tctaatagaa gaatgctaat gagttgtagt gaagagcaga atgtggtact gtattctaat
     3781 ccagtgccaa tctatcagtc agaaatgggg gccagcacct tccctcaggt gtggagtagt
     3841 cagagctgtg ggttccacct gaactttgca gaatagtaac ttctgttagg agacagggag
     3901 tatggagaga agtctctggt ttgtgtgtcc tggctcccag aagacattct gtgctgttga
     3961 agtaggtaac agtggagaga agaaaatatc acatttccag tgtgtagtgg tgatcgtagt
     4021 ccctgagttg tcaatgaagg gtcgtgcgag gcaggaagac ctaaggatgc tccagtgtct
     4081 tggtgtagat ggtaaagcaa gaggaaggca gaagtggaac tttgggtgca gaggtgctag
     4141 gcaacagagg gagggctcag cacgaggcag ccgtggcctc acggaccccc agttcctctc
     4201 tgaggaggac ctgtcctgct ggaatggacc aagagaagac cacctgtgga ggctgaagaa
     4261 tggatacccc tcagtgctgg gagccagggc ccttgtaaag gaaggcgctt ggtaagagcc
     4321 aggggtgtgt gtcatctttc tgagcttcgc agaagggaga tgtgcctagt atttgtgtgt
     4381 gtggctgaag tgtagaagca cggtttggaa aggagaggaa ggcgcctgag tagggcgggg
     4441 gtgcatacag tcagctgctg gactcttcct ggggagcggg acagtgactc tgtaaccaac
     4501 cttagaatca ctttagattt gtaatcaaaa tggttctatg atttaccttt tgactattcg
     4561 cagataattg taaattctgg ttttataagc ccaagtcatt ttacatttgc tttttcaaaa
     4621 ttattaaatt ggaatttttt aatcctttat atacaaaaaa agagttataa gcactcagtg
     4681 tgtgtctctc ttccccttag tcagcttacc tggttcttct gttctgtttt actttaatca
     4741 gatagattca cattatcttc ctggaggaaa aagaaagcaa aattagctat tgataattag
     4801 tttccaaatg ccaagagtgg tctttcattg ctaaaagtta tctcatttgg gtattcaaaa
     4861 acattcaaaa agtcagttag tttgtaactg tagacaccga taaaggtcat cctttgcagg
     4921 atgctaccag tgccataagt ttgggttgtc aggagatggg ccctaaaaaa tgaccagagc
     4981 aggacagaaa gggatgcttc ttttagccag tctacaccca cttcagagct cttgtgttgt
     5041 gtggtcctgg tattggaatc ctggccagaa ctacttcaca gcccctttgc ctaaaccatt
     5101 gtggaagcca ggcctcccat gttgaagaca ttttaatccc caaattcccc catgatgtct
     5161 gttttcccta gcagcagagg gcactgatca gatggatttt gttcctgcac cctgtacata
     5221 atgttttgag tggcaggtcc agggacgtga gaccgttgct cttccctttg tttctctcct
     5281 ggttttgtaa atgattctca actgatatat gagttcaatg agctgttggc ttgaggcaaa
     5341 tgaagtttgc aactgtgctg atttaatagg agtctcgtgt tgtctgtcaa ggtgccttcc
     5401 tctgctgaag ccttacctct tcgcagccct gcctcttctt acccaacaat gctgactctt
     5461 ctctgtgtat atgcaaataa acctattaat cacttcc
//
