LOCUS       NM_001398928            7355 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus DDB1 and CUL4 associated factor 17 (Dcaf17),
            transcript variant 2, mRNA.
ACCESSION   NM_001398928 XM_006234347
VERSION     NM_001398928.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 7355)
  AUTHORS   Jin,J., Arias,E.E., Chen,J., Harper,J.W. and Walter,J.C.
  TITLE     A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2,
            which is required for S phase destruction of the replication factor
            Cdt1
  JOURNAL   Mol Cell 23 (5), 709-721 (2006)
   PUBMED   16949367
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Dec 28, 2021 this sequence version replaced XM_006234347.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.328808.1,
                                           SRR26360190.2715705.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-339               JAXUCZ010000003.1  76271554-76271892
            340-443             JAXUCZ010000003.1  76272246-76272349
            444-534             JAXUCZ010000003.1  76275721-76275811
            535-671             JAXUCZ010000003.1  76279426-76279562
            672-750             JAXUCZ010000003.1  76281156-76281234
            751-840             JAXUCZ010000003.1  76283634-76283723
            841-945             JAXUCZ010000003.1  76286222-76286326
            946-1051            JAXUCZ010000003.1  76286592-76286697
            1052-1194           JAXUCZ010000003.1  76289854-76289996
            1195-1304           JAXUCZ010000003.1  76291770-76291879
            1305-1392           JAXUCZ010000003.1  76293914-76294001
            1393-1476           JAXUCZ010000003.1  76295011-76295094
            1477-1632           JAXUCZ010000003.1  76296287-76296442
            1633-7355           JAXUCZ010000003.1  76297599-76303321
FEATURES             Location/Qualifiers
     source          1..7355
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q22"
     gene            1..7355
                     /gene="Dcaf17"
                     /gene_synonym="RGD1565551"
                     /note="DDB1 and CUL4 associated factor 17"
                     /db_xref="GeneID:499807"
                     /db_xref="RGD:1565551"
     exon            1..339
                     /gene="Dcaf17"
                     /gene_synonym="RGD1565551"
                     /inference="alignment:Splign:2.1.0"
     CDS             214..1773
                     /gene="Dcaf17"
                     /gene_synonym="RGD1565551"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 17 isoform 2"
                     /protein_id="NP_001385857.1"
                     /db_xref="GeneID:499807"
                     /db_xref="RGD:1565551"
                     /translation="MGRTRKANVCPRLSRRALGFYTRDAGVVQRTNLGILRALVCQES
                     TKFKNVWTTHSKSPIAYERGRIYFDNYRCCVSSVASEPRKLYEMPKCSKSEKIEDALL
                     WECPVGEILPDPSDYKSSLIALTAHNWLLRISATTGEILEKIYLASYCKFRYLSWDTP
                     QEVIAVKSAQNKGSAAARQAGTQPPVLLYLAVFRVLPFSLVGILEINRKVFENVTDAT
                     LSHGILIVMYSSGLVRLYSFQAIIEQFMQQKLDLGCACSQGGTTGTVGEAPFGIPCNV
                     KITDSPPPLFEVSSLENAFQIGGHPWHYIITPNKKKQKGVFHICALKDNSLAKNGIQE
                     MECCSLESDWIYFHPDASGRIIHVGPNQVKVLKLSEVENNSSQHQISEDFVIWANRED
                     RKENLITVTASGRVVKRNVNLLDDDPEQETFKVVDYEDELNLLSVVAVTQIDAEGKAH
                     LDFHCNEYGTLLKSIPLVESWDVTYSHEVYFDRDLVLHIEQKPNRVFSCYVYQMVCDP
                     GEEEETVNRSD"
     exon            340..443
                     /gene="Dcaf17"
                     /gene_synonym="RGD1565551"
                     /inference="alignment:Splign:2.1.0"
     exon            444..534
                     /gene="Dcaf17"
                     /gene_synonym="RGD1565551"
                     /inference="alignment:Splign:2.1.0"
     exon            535..671
                     /gene="Dcaf17"
                     /gene_synonym="RGD1565551"
                     /inference="alignment:Splign:2.1.0"
     exon            672..750
                     /gene="Dcaf17"
                     /gene_synonym="RGD1565551"
                     /inference="alignment:Splign:2.1.0"
     exon            751..840
                     /gene="Dcaf17"
                     /gene_synonym="RGD1565551"
                     /inference="alignment:Splign:2.1.0"
     exon            841..945
                     /gene="Dcaf17"
                     /gene_synonym="RGD1565551"
                     /inference="alignment:Splign:2.1.0"
     exon            946..1051
                     /gene="Dcaf17"
                     /gene_synonym="RGD1565551"
                     /inference="alignment:Splign:2.1.0"
     exon            1052..1194
                     /gene="Dcaf17"
                     /gene_synonym="RGD1565551"
                     /inference="alignment:Splign:2.1.0"
     exon            1195..1304
                     /gene="Dcaf17"
                     /gene_synonym="RGD1565551"
                     /inference="alignment:Splign:2.1.0"
     exon            1305..1392
                     /gene="Dcaf17"
                     /gene_synonym="RGD1565551"
                     /inference="alignment:Splign:2.1.0"
     exon            1393..1476
                     /gene="Dcaf17"
                     /gene_synonym="RGD1565551"
                     /inference="alignment:Splign:2.1.0"
     exon            1477..1632
                     /gene="Dcaf17"
                     /gene_synonym="RGD1565551"
                     /inference="alignment:Splign:2.1.0"
     exon            1633..7355
                     /gene="Dcaf17"
                     /gene_synonym="RGD1565551"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aatcccgtga gcagaaggaa gggcccggaa ggcgccgttg gttctgttcc tttgctccaa
       61 acccttgtgg tgctacctct tggtctctgt cccgagtgcc cagtgcggtg ctccggcgtc
      121 agccttccct tgagactcgc aggtgtggcg gctgccaccc ctggcggaag tgaggggcgc
      181 gcccctccag ggccctgcgg accccgagcc tccatgggcc ggacccggaa ggccaatgtg
      241 tgccccaggc tgagtcgccg tgctctgggc ttctacacac gcgacgcggg cgtggtgcag
      301 aggacgaacc tgggcatcct gcgggcgctg gtgtgccagg agagtactaa atttaagaat
      361 gtttggacaa ctcattccaa gtcacctata gcctatgaga gaggaagaat atattttgac
      421 aattaccggt gctgtgtcag cagtgttgca tcagagccaa gaaaacttta tgaaatgcca
      481 aaatgttcca aatcagaaaa aattgaggat gctttattat gggaatgccc agtgggagaa
      541 atacttcctg acccgtcaga ctataaatct tcactcatag cactgactgc tcataattgg
      601 ctgcttcgta tatcagcaac tacaggggaa atcctggaga aaatatacct tgcttcctat
      661 tgcaaattca ggtacctgag ctgggacact cctcaagagg tcattgcagt gaagtcggct
      721 cagaacaaag ggtctgcagc agctcggcag gcaggcactc agcctcctgt tctgttgtac
      781 ctcgccgtgt tccgggtcct gcccttttcc cttgtaggga ttctagagat caacagaaag
      841 gttttcgaga acgtcacaga tgctaccttg tcacatggaa tcctgattgt gatgtacagc
      901 tcaggactag tcaggctgta cagcttccaa gccatcatcg agcagttcat gcaacagaaa
      961 cttgacttag ggtgtgcatg cagtcagggc gggactactg ggactgtagg agaggctcct
     1021 tttggcattc cttgtaatgt taaaatcaca gactcaccac ctccactctt tgaagtttca
     1081 tccctggaga atgcatttca gattggaggc catccttggc actacatcat cacgcctaat
     1141 aagaagaaac aaaagggagt tttccatatt tgtgccctta aagataattc cctggcaaaa
     1201 aatggaatcc aggaaatgga atgttgttca ctagaatctg actggatcta tttccaccct
     1261 gatgcttctg gaagaataat acacgttggc ccaaatcaag tcaaagtctt gaagctgagt
     1321 gaagtagaaa ataatagttc tcagcatcag atctctgaag attttgtcat ttgggccaat
     1381 agagaagaca gaaaggaaaa cttaatcacg gttacagctt ctggacgtgt ggtgaaacga
     1441 aatgtcaacc ttctggatga tgacccagaa caggagactt tcaaagtcgt ggactatgaa
     1501 gatgagttga acttgctttc cgtagtggct gtcactcaaa tagatgcaga agggaaagct
     1561 cacctggatt tccactgtaa cgagtatgga accttactca aaagcatccc actagtggag
     1621 tcatgggatg tgacctatag ccatgaagtc tactttgaca gagatttggt gctgcacatc
     1681 gaacagaagc ccaacagggt cttcagctgc tatgtttacc agatggtctg tgaccctgga
     1741 gaagaggagg aaactgtcaa cagaagcgat taagacagtg agatcatcat aacttgaaac
     1801 attggtgaaa cctcaatcag ctgtgtctag tcctcattat ctgcatggaa cattctacag
     1861 tattttccag aacaggtctt gtgctagctt caaaggacta ggttatactc accacgtaca
     1921 gtggtaagga ctccatctga tgtaaatgct ctctaggatg ctgtcccaag agacccagca
     1981 ttttgaaact tcgattaggt gctaatgtga gtataaaatg ctagggaaca ggacagctaa
     2041 gtctatgggt cagagacatc actgatgcag ggacaactaa ggtaattctt aaagactact
     2101 atgaagtaag gctaggagag agaaacaaaa ctattaaata tagacgccag gtatggtggc
     2161 acgtaacctg tcatctctgc tcgcagatag agcagaaaga ccagaagtcc aaagccagtg
     2221 ttagctatat agcaaattca aattctccac aagacctggt ctaaagaagt caacataaag
     2281 ataaaggaat tctatatact ctataccaaa ctttgcttaa ggattagaag taggatttct
     2341 aatgtaaaat catacttttg agccaaaaat caccacagct tctttgtaaa caaaaacaaa
     2401 ccaaaaaaaa ggggggggat atcatttcta gttttcagat catttcttac gtggttttat
     2461 tctcatggcc tgatgttctc attgactgtt tatgtgtata aataccagtg cacttgactt
     2521 tgtttctgag gacatatttg catgttcatg tgtacgctgg tgtgcacata ttggcaggtg
     2581 tgcccacatg tgtgcctggc atttggaggc taaaagtcaa ccaatggtgt tctcaagagc
     2641 catctacggt gcattttcag acagggtctc acaagggcct gcgacttacc aatcgtgcta
     2701 gcctggctgg ctggccaggg atgctcctgt ctcttgccca gcactgggag taaaggcata
     2761 ctgcatgccc agatatgtac agggctgggc atcaaactca tgcttatata gcaagcactt
     2821 tactaatgag ctatctccct agcatatgta ctataaaaga ttccaggcaa atttcaaagg
     2881 aaagcttttc ctcatttgta cactgtttag cttttagtac agctaacaag gtttgtctta
     2941 ttttccactc tatttactga gtggctctgt ttgtttagtg atattttcat atgtatgcaa
     3001 gaacataaag gggcctcggt taggccccct tctgtgcatt gctggcccct ggtggcctct
     3061 tctttgtagc acaattgaaa ccaagaggag ttcttattag ccagaagaag attttgattg
     3121 ttcatggaag gaatgttttt cttctgtgtt agaacagatt taaacatgac acttgaattc
     3181 cagtaatcac ctttagaatg ttagataaga acaatgtaga gggagagact gttacttaca
     3241 gtccctgtct gagaaactcg gttgctcaga acctacatgg tcatctcatt tttccaagtc
     3301 atcctccaaa gtaactgtaa aacaaggaac gaacagtcag agcaagtagt tcacacctgt
     3361 atccaagcat tcagggagct gcaacaggag gattactgca agttcagggc caacttgtac
     3421 tatgtagcaa aatcttgctt taaacaaaac aaaacccttg atcccaaagg cagaggcagg
     3481 acaatcaaga attctgtgtg agcttggcat gtaataagtt cagaaccagc ccagactggg
     3541 cttttacgct ttaataaagc ataaaagaag agcaacaaac catatttgat tcaagtttaa
     3601 ggttaaaata aggaatttta acttggaaga tctgtgtaaa aatctcctca ttttgtcctg
     3661 acttcatatt aagattggta tgaattccaa gccagtaggt ggtggtacac acctttaatc
     3721 ccagtgtttg gtaggcaaag acaggtggat ctctgagttc aaggccagcc tagtcttcag
     3781 agagaggaca ggacagccag ggctccacag agaaaccctg tctgggtcag gtagaggtgg
     3841 agaatggtgt gaattctgtc cagtcagccc ttgaaaacct gcaaaaatat ttctaggtga
     3901 ttatgatcag caggactaaa gagaaaggtg ttggctgttt aaaaatcaaa gaattagtaa
     3961 ctaatctatt cagtcaagaa ataaaggaaa cctaaaaatc atctttttgt gccaagaaaa
     4021 aagttacagg ttcaatattc cttgtctaag atgtttagca ccaaaagtgt tttgtaattc
     4081 acatttcccc tgattttagg atatttgtgg gtacattata aaatctgcag gaggggtcca
     4141 aggtctaagc atgaaaatca ttttaagttt aatttatatc ttgtgtgtat aatctgaaga
     4201 tgcttttgtg ctgtgtttta agtgcaccta tccatgcttt aactgtgtcc cagcaagtta
     4261 gatcaggtgt tgaatttcgt actcatgaca tcatgttagc tctaaagttt tgattttgag
     4321 agcatttttg atttccggat tagggatgtt aatttaataa gtattgatgt tttagaataa
     4381 ggcagaatgt atgtgagaaa aagaaatcct tctgaagcgg atcctattta gaattgtcat
     4441 ttgggaacaa agaaatcatt acctcatgag caagatagta ccatgttaag tctaatactc
     4501 agatctaggg agggaagaat tcagtcttgt tgtatgatcc gtaacatctc tatttagcgt
     4561 ctgaagctct gagagcatgt cacagacagc actgtaatta cagagcagtt aatagttaca
     4621 gtgcccagcc ctatctgaca tttgcacctt agaatttgtt tttgctttgt tgtttgggtg
     4681 gctttcgttt gattagtttg ttttctggtg tgtgtgcgtg tgtgtattta gatatgtagc
     4741 cctggctgcc ttgctacacc atgtagagca ggctagcctc aaactcacag aaaatctgcc
     4801 tgcttccatc tttccttgct gcgatggagg ggaactgcag cagccagcag gaggggtgct
     4861 gccgtgcagg cttagctctg tgttttgaga gcatttagaa gagggtatct ttagacttca
     4921 gtcctggcaa agaatctttt gaaggtggca gttgactgtc ttctcctttg tcattgttat
     4981 gtgtatgtat atacgtgtga taatagaaac tcatattcag gaaggctgtt gagacatttc
     5041 ttaggtcttt ttaagaaaaa agaatgggct acttctagac taactataat gtgaccacta
     5101 agaaagtcct agtgtgagcc gaacctgatg gctcccagct gaaatcctag caaatgggag
     5161 gctgaagcag gagggttgcc acaagttgga ggctagcctg ggttgtatgc ttacaaccac
     5221 ttgtaaaccc agatccaaga gctctgacac ccacttatgg actccccaaa cacacacaca
     5281 cacacacaca cacacacaca cacacacaca cacatataca tatgttcaca catgcccaca
     5341 gatatgcaga gtacacacac acacagagga aagagagaga gagagagcga gagtgagtac
     5401 gagcgagagc tgtgcccaac taacaggatg aactacagct gtttggttgt ggcagtttat
     5461 gttgaaaaac agtggacaaa ccgtagattc tactcatacc aagaagatga gctgggaatg
     5521 tagcttagcg gtagagcctt ggctgttgtg ctcatatgag gccctaggtt cagttcccag
     5581 tgctggaata acaacagcag cagccgcagc aaagacaacg agtgctcccc agaagcacca
     5641 cggctctctg gtgtctgcag ttgcgcactc agaagtaggg ctgcttctct cagcagatac
     5701 agaccttatt cccagagtga cacagcaggc ttattgttct acagtatttg tcacaaccct
     5761 gggagaaaca gcaaatcctg tcactgctgc tagtgaacta acaagtaagg agatgatttt
     5821 attttgttta aataaagata gcccatggtt tcccaccttt tgagcatttt ttttaacctt
     5881 ccttatgtat acttaaaagg ggggtgggtc atgttctccc tccctccctc tctctgctcc
     5941 ctttttttct ccccctttga ttttctctct ccccctctcc tccaaccctg aaattttctg
     6001 tgtagtccag gctgtgatga gcctccatgc ccacctgtga ttctgaatgg ttttgtctgc
     6061 tactgacctt gatacaggta aaggattcct attgaaagta accacttcag gtataaatcg
     6121 ccattccctt tccccttgta cccctgggga agtgaggctt ggacacacgc ccatagcaca
     6181 gtgacagacg ttacagtaag gacccggggg ctgttattga gtgtgaggtg gtctttgttt
     6241 gttccctgtg gtctgtactt cacctggtgc tgaatagtga ccttgggcct ctgtacacac
     6301 caagcaatgc tctaactaca acccagcacc tagggtgtgt gtgtgtgtgt gtgtgtgtgt
     6361 gtgtgtgtgt gtgtgtgtgt gtgtgtgagt gatcattgaa ttccatgttt ttggactaaa
     6421 cttggatagg gcagagttta tacataaatt gacggaaagg tggctcttca tttaataatt
     6481 ggatgtagtt cagaaacaat gtttgtaatc gagtaaacag tatcagtaac tactctttct
     6541 atagttagca tctattaaat catttttgat gttggcagat tattgccaca agggcaaggc
     6601 taacacaggc tgcttagtgt caggccagta aggactccac agcaagatcc tctcaaaaag
     6661 aagatgacgg tgatgacagc gatgattttt acactttctt ctcttcctta ccatgtttgt
     6721 taacactaaa catttagaac ctaaagaaaa cctaggccct aatttctgcc ctctgtggtt
     6781 ctgtggggtc tctatctcac atggagaaaa atatatttca accaagggct gtagtagatg
     6841 agacagaccc tgctctgttg tgttgagaag attttaaaca taaactttat ataattgtat
     6901 tatgtaacca aacaccacaa aggtttcatt gttttattac cgatttttag tgcacttcaa
     6961 aataagtcac ccaatacctt atttaaattt taaaaatgta tttaatattt acatgtaatg
     7021 gaattcacat atattgtata aatttgctga tttttttttt aatgattgta taatccacat
     7081 ccttctcaaa attgaaagca ttggaatcat ccattcccag cccacacagg catcacctac
     7141 acccactgtc attccaccat gttccagacc gaactcctta gcacgatgac gatgacgact
     7201 gtggagcacc cacgttggag catcacttgt tcattacttt ttattcctga accttttata
     7261 tgaatatacc agtttgtctt tccgtctccc cattgatggg ctatttctgc tatttttttt
     7321 cttactgtta tgaataaagc tgctctggtc actta
//
