LOCUS       NM_001173558            1526 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus DDB1 and CUL4 associated factor 13 (Dcaf13),
            mRNA.
ACCESSION   NM_001173558 XM_001061920 XM_001081959
VERSION     NM_001173558.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1526)
  AUTHORS   Britschgi,A., Duss,S., Kim,S., Couto,J.P., Brinkhaus,H., Koren,S.,
            De Silva,D., Mertz,K.D., Kaup,D., Varga,Z., Voshol,H.,
            Vissieres,A., Leroy,C., Roloff,T., Stadler,M.B., Scheel,C.H.,
            Miraglia,L.J., Orth,A.P., Bonamy,G.M., Reddy,V.A. and
            Bentires-Alj,M.
  TITLE     The Hippo kinases LATS1 and 2 control human breast cell fate via
            crosstalk with ERalpha
  JOURNAL   Nature 541 (7638), 541-545 (2017)
   PUBMED   28068668
REFERENCE   2  (bases 1 to 1526)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 1526)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 1526)
  AUTHORS   Jin,J., Arias,E.E., Chen,J., Harper,J.W. and Walter,J.C.
  TITLE     A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2,
            which is required for S phase destruction of the replication factor
            Cdt1
  JOURNAL   Mol Cell 23 (5), 709-721 (2006)
   PUBMED   16949367
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            EV763930.1 and BC158730.1.
            
            On or before May 13, 2010 this sequence version replaced
            XM_001081959.2, XM_001061920.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ228874.1, FQ218394.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-406               EV763930.1         1-406
            407-1526            BC158730.1         1-1120
FEATURES             Location/Qualifiers
     source          1..1526
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q31"
     gene            1..1526
                     /gene="Dcaf13"
                     /gene_synonym="Gm83; Wdsof1"
                     /note="DDB1 and CUL4 associated factor 13"
                     /db_xref="GeneID:362902"
                     /db_xref="RGD:1308458"
     exon            1..137
                     /gene="Dcaf13"
                     /gene_synonym="Gm83; Wdsof1"
                     /inference="alignment:Splign:2.1.0"
     CDS             68..1405
                     /gene="Dcaf13"
                     /gene_synonym="Gm83; Wdsof1"
                     /note="WD repeats and SOF1 domain containing; WD repeats
                     and SOF domain containing 1"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 13"
                     /protein_id="NP_001167029.1"
                     /db_xref="GeneID:362902"
                     /db_xref="RGD:1308458"
                     /translation="MKVKMLSRNPDNYVRETKLDIQRVPRNYDPTLHPFEVPREYVRA
                     LNATKLERVFAKPFLASLDGHRDGVNCLAKHPKSLATVLSGACDGEVKIWNLTKRKCI
                     RTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMDGPGCGEEEEPLYTVLGKTVYT
                     GIDHHWKDPAFATCGQQVDIWDEQRTSPVCSMNWGFDSISSVKFNPIETYLLGSCASD
                     RNIVLYDMRQATPLKKVILDMRTNTICWNPMEAFNFTAANEDYNLYTFDMRALDTPVM
                     VHLDHVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVYHTRRMQHVICVKWT
                     SDSKYILCGSDEMNIRLWKANASEKLGVLTSRERAANDYNQKLKEKFQYHPHVKRIAR
                     HRHLPKSIYSQIQEQRVMKEARRRKEMNRRKHSKPGSVPVVSERKKHVVAVVK"
     exon            138..337
                     /gene="Dcaf13"
                     /gene_synonym="Gm83; Wdsof1"
                     /inference="alignment:Splign:2.1.0"
     exon            338..445
                     /gene="Dcaf13"
                     /gene_synonym="Gm83; Wdsof1"
                     /inference="alignment:Splign:2.1.0"
     exon            446..535
                     /gene="Dcaf13"
                     /gene_synonym="Gm83; Wdsof1"
                     /inference="alignment:Splign:2.1.0"
     exon            536..691
                     /gene="Dcaf13"
                     /gene_synonym="Gm83; Wdsof1"
                     /inference="alignment:Splign:2.1.0"
     exon            692..769
                     /gene="Dcaf13"
                     /gene_synonym="Gm83; Wdsof1"
                     /inference="alignment:Splign:2.1.0"
     exon            770..852
                     /gene="Dcaf13"
                     /gene_synonym="Gm83; Wdsof1"
                     /inference="alignment:Splign:2.1.0"
     exon            853..1017
                     /gene="Dcaf13"
                     /gene_synonym="Gm83; Wdsof1"
                     /inference="alignment:Splign:2.1.0"
     exon            1018..1153
                     /gene="Dcaf13"
                     /gene_synonym="Gm83; Wdsof1"
                     /inference="alignment:Splign:2.1.0"
     exon            1154..1317
                     /gene="Dcaf13"
                     /gene_synonym="Gm83; Wdsof1"
                     /inference="alignment:Splign:2.1.0"
     exon            1318..1500
                     /gene="Dcaf13"
                     /gene_synonym="Gm83; Wdsof1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgtggaggcc gggttaagtc gagctcggct taaaggctcg aggagtccta gacccagagc
       61 cgccaaaatg aaggtgaaaa tgctgagccg gaaccctgac aactatgtcc gcgaaaccaa
      121 gctggacata caaagagttc caagaaacta cgatcctact ttacatcctt ttgaagtccc
      181 aagagaatat gtaagagctt taaatgctac caagttggaa cgggtgttcg caaaaccatt
      241 ccttgcttcc ctggatggtc accgtgatgg agtcaattgc ctggccaagc atccaaagag
      301 cctggctact gttctttctg gggcgtgtga tggagaggtt aaaatttgga acctgactaa
      361 acgaaaatgt atccgaacga tacaagcaca tgaaggtttt gtccgaggaa tatgcactcg
      421 cttttgtgga acttcttttt ttactgtcgg agatgacaaa actgtgaagc agtggaaaat
      481 ggatggacca ggctgcggag aggaggagga accgttgtac acggtgttag gaaagacagt
      541 atatactggc attgatcatc actggaaaga cccggccttt gccacgtgtg gacagcaagt
      601 agacatttgg gatgaacaaa gaaccagccc tgtgtgctca atgaactggg gatttgacag
      661 tataagtagt gttaaattta accctattga gacatatctc ttgggaagtt gtgcttctga
      721 taggaatata gtactgtatg atatgcggca agctactcct ttgaaaaagg ttatcctaga
      781 tatgagaaca aatacaatct gttggaaccc tatggaagct ttcaatttta ctgcagccaa
      841 tgaagactat aacttgtata cttttgatat gcgtgcactg gacactcctg ttatggtcca
      901 cctggatcat gtatctgcag tgcttgatgt agactactct ccgactggga aggaatttgt
      961 gtctgctagt tttgataagt ctattagaat cttccctgtg gacaaaagcc gaagcaggga
     1021 agtgtatcat acgaggcgca tgcagcatgt tatttgtgtg aaatggactt ctgacagcaa
     1081 gtacattctg tgtgggtctg atgagatgaa catccggctg tggaaagcca atgcctctga
     1141 aaaattgggt gtgcttacat cacgagaaag agcagcaaat gattataacc agaagttaaa
     1201 ggaaaaattt cagtaccatc cacatgtgaa acggattgct cgccaccgac atctgccaaa
     1261 atctatctac agccagattc aggagcagcg tgttatgaag gaggctcgtc gccgcaagga
     1321 aatgaatcgt cgtaaacata gcaagcctgg atctgtgcca gttgtgtcag agaggaagaa
     1381 acacgtagtg gcggttgtga aataatgttt tgtcttccta ccaagcttga tatataatta
     1441 tttgctactt ttgatttggg aactctgtaa ataaaagtcc tggccctggt taatagtaaa
     1501 aaaaaaaaaa aaaaaaaaaa aaaaaa
//
