LOCUS       XM_039111403            3934 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DDB1 and CUL4 associated factor 12
            (Dcaf12), transcript variant X1, mRNA.
ACCESSION   XM_039111403
VERSION     XM_039111403.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111403.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3934
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3934
                     /gene="Dcaf12"
                     /note="DDB1 and CUL4 associated factor 12; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 40 ESTs, 6 long SRA reads, 10 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:682812"
                     /db_xref="RGD:1594034"
     CDS             731..2092
                     /gene="Dcaf12"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 12 isoform X1"
                     /protein_id="XP_038967331.1"
                     /db_xref="GeneID:682812"
                     /db_xref="RGD:1594034"
                     /translation="MARKAVSRKRKAPASPGAGSDAQGPQFGWDHSLHKRKRLPPVKR
                     SLVYYLKNREVRLQNETNYSRVLHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQ
                     VVCGTKCNTLFVVDVQTGQITKIPILKDREPGGVTQQGCGIHAIELNPSRTFLATGGD
                     NPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWINDTMAVSGSRDGSMGLWEVTDDVLT
                     KSDARHNVSPVPVYAHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYF
                     HLWKAENALSKLLSTKLPYCRENVCLAYGSEWSVYAVGSQAHVSFLDPRQPSYNVKSV
                     CSRERGSGIRSVSFYEHIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLAGENL
                     KLTTGKGWLNHDETWRNYFSDIDFFPNAVYTHCYDSSGTKLFVAGGPLPSGLHGNYAG
                     LWS"
ORIGIN      
        1 ccacagtcct gcccactcac aatgtgttta tctctgaaga cacaggccta atcaggaaag
       61 atgggactgc ctctcccaag gcagaactgc agatgggcca acacagttcc ctggaggtat
      121 gaggcctgaa gctgaaggga ccagcaggtt caagattggt cccgcagcga ggcagccatg
      181 ctccgccatt acttccgcat gccagaggat gagctggctg aggtcggaaa ggccccgcca
      241 gaaggctgga ttcctctggc cacagcttgg ccacagctaa accgccatag gcaagaggca
      301 agcggaagtt ctccgaggac atcaattctc cttgctgccc ttaagtcccg cccctctggt
      361 ctaggtggtg tctccgtggc gacgtgctgc atgtgaggct gcgcaggagt gacgagacgc
      421 gggcgagtgg gagggggtgt tttggttctc gccgctcgcc gtcctttcca gaactggtgg
      481 taggaaagct gcttgttcct gcttttcctt ccctttccct tcccaacccc ttcccctttc
      541 ccaacccgga ttttccctcc ttccatttac gcgcctcatt ttgatcgtct gctgccccgg
      601 atccagacta ttttccgggc cgggcgcacg aaagcgcgcg gccccagggc ccggtacatg
      661 acccgccgcc ctgccgcccc ttgcctcctc cgccccatgt ggctgcgggg ccacagcggc
      721 gctgcccact atggcccgga aagcagttag caggaagcgg aaagcgcctg cctcgccagg
      781 agccgggagc gacgctcagg gcccacagtt tggctgggat cactcgctgc acaaaaggaa
      841 aagactcccc ccagtgaaga gatccctagt gtactacctg aagaaccgag aagtcaggct
      901 acagaatgaa accaactact ctcgggtgtt acatggttat gcggcacaac aacttcccag
      961 tctcctcaag gagagagaat ttcaccttgg gacccttaat aaagtgtttg cttctcagtg
     1021 gttgaatcat agacaagtgg tgtgtggcac gaaatgcaac acgctctttg tagtggatgt
     1081 ccagacaggc caaattacca agattcctat tctgaaagac cgggaacctg gaggtgtgac
     1141 tcagcagggc tgtggtatcc atgcaattga actgaatcct tctagaacat tcctagccac
     1201 tggaggagac aacccaaaca gtctcgccat ctaccgcctg cctacattag accctgtgtg
     1261 tgtgggtgat gatggacaca aggattggat cttttctatt gcgtggatca atgataccat
     1321 ggcagtgtct ggctctcggg atgggtctat gggactctgg gaggtgacag atgacgtgtt
     1381 gaccaaaagt gatgcaagac ataacgtgtc accagtccct gtgtatgctc atatcactca
     1441 caaggcctta aaggatatcc ccaaggagga tacaaacccg gacaactgca aggtgcgggc
     1501 tttagccttc aacaacaaga acaaggagtt gggagcagta tcgctagatg gctacttcca
     1561 tctctggaag gctgaaaatg cgctgtctaa gctcctttcc accaaattgc catattgtag
     1621 agaaaatgtg tgtctggcct atggtagtga gtggtcagtg tatgcggtgg gctctcaagc
     1681 gcatgtctcc ttcttggatc cacggcagcc atcgtacaac gtcaagtctg tctgctccag
     1741 ggagagaggc agtgggattc gctcagtgag cttctatgaa cacatcatca ctgtgggcac
     1801 agggcagggc tccctgctgt tctatgacat ccgagctcag agatttttgg aagaaaggct
     1861 ctcagcttgt tatgggtcca agcccagact cgcaggggag aatctgaaac taactactgg
     1921 caagggctgg ctgaatcatg atgaaacctg gaggaattac ttttcggaca ttgatttctt
     1981 ccctaatgct gtttacaccc actgctacga ctcgtccgga acgaagctct tcgtagcagg
     2041 gggtcccctc ccttctgggc tccatggaaa ctatgctgga ctgtggagtt aatgacaact
     2101 aactttctcc caaatgcaga tgcacactaa cttccaccct cagttttctt gtttggtgtt
     2161 ttgatttccc cagctgtgga aggctctcct gtgtacgcaa acacagaatt tgcccatggt
     2221 ttaggcagtt accaggaaga ggctctatgc agaaatccaa acgctgggac gctcgcggtc
     2281 ggttggtggc ttgttgttct gggtttttgg tttgttttca cttttcagta attagacttt
     2341 tactttttcc cccttctgct ttctcaagca aacactgtta caaatccctc tttatttttc
     2401 cctcaagtga caacactctc cttcctctgg cttatttaca ctgaaatgac caagtcattc
     2461 tcacccttac ttcactgagg tagggcccct ttataatcgt gtggtggctc tccaactttc
     2521 tgtgaaagtg tgggagccgt gtgtgtgtat gtgttgtgtc tgtctgtctg tctgtgtctg
     2581 tgtctgtgtc tgtgtctgtg tgcgtgagct tgtgtgcctg gtagcactgc gtcactgata
     2641 ctacttggag tgaggattat ctgtaattaa agtatttata aaagaaacaa ctttactcag
     2701 agtccagctt tgggaccagc ctgtatcttt ttttaaggtc tgacattgta ggaagagaaa
     2761 caaacacagg aggaaaaccc ttgagtagat tagcagggtg tgaggggagg ctatatccca
     2821 ggactgcaaa ctggtccaga cctccatgtc cctcccacct gtgtgcccag gaagagtgcc
     2881 catttgttac ttccacttca cgtctgctca gcccagaccg cttggctaag acatcgggtg
     2941 tatctccggg gactgctggc cacctcacag tctaggtaaa gacaatcctt tccccggtct
     3001 gctgcctctg atggtctgat ctgggcaaga gcaggcagtc tcgaacccac atgattgcca
     3061 ttcatgactt ctagaaggaa cttgagcatt cttggggttt tgctggtatt ttctatttgt
     3121 tctgcccaga acgtgtggtt tgtagtgagt gctttgtgtg tgggttctgt tcctcagtgc
     3181 agtggggctt agtgttggaa gtcaccctcc tgccctgttg gctcacccct gggtaatgac
     3241 aggtggttgt gccagcatcg ctgcatgtga cggtgtagat ataattggtg atttgcttgt
     3301 tcctctcaaa ctctttagtg tgagggttgt tttttttttt tttttttttt ttttttaact
     3361 tgcaggcaac tgtcaggcca gttgtcttct tcacacatca tgtggaaagg agctctctcc
     3421 accctagtta ctctgagaca tgcagtgctg ctctggcagt acccagtcct gagagatgga
     3481 gtcatagtcc tgtacccagt ttcttggctg ctccccagtt cttccatttt tctctttgtg
     3541 tcaaaagagt actctcataa tggcagggac tgctggggag ggaggaggca ggcccactgt
     3601 aggacagcac attccacagg ttttagaata atcattccta taatctagag aaataggtgc
     3661 tatgaacagg aaattaagca aaatgctgga tgctgtgaat cttttgtctt aatttttttc
     3721 tattaaacta caagctgtag ctgtcttagt tctcacagaa cttctgtctt tttaaactga
     3781 cttgtgtgtt taaaaccaga acttttgtag gacgtccgtg ccgttgccag accgtctcct
     3841 gtgatgcttt cggttgtctt gagattctct gtttttaaaa atgtagcatt ttgacttttt
     3901 tgccaaggaa aaataaatac tatcctagtg caga
//
