LOCUS       XM_001053826            1515 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus developing brain homeobox 2 (Dbx2),
            transcript variant X1, mRNA.
ACCESSION   XM_001053826
VERSION     XM_001053826.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_001053826.6.
            
            On Jan 21, 2021 this sequence version replaced XM_001053826.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1515
                     /gene="Dbx2"
                     /note="developing brain homeobox 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 1 EST, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     32 samples with support for all annotated introns"
                     /db_xref="GeneID:541457"
                     /db_xref="RGD:1359605"
     CDS             61..1194
                     /gene="Dbx2"
                     /codon_start=1
                     /product="homeobox protein DBX2 isoform X1"
                     /protein_id="XP_001053826.1"
                     /db_xref="GeneID:541457"
                     /db_xref="RGD:1359605"
                     /translation="MDGSDTPSIPVVKTQSGSADCSRTLPEALLRAKDALRSPDPAGA
                     LSRSPRTRSPRLPGQRARTMLPSAVAAQAGAYWDVVASSALLGLPAPGFGSLGKSFLI
                     ENLLRAGAGPTHAPPSPRPAAGPECPQLRSLPANPVPLKLCPAGPFGARWAFQMPPGR
                     APGERDSAFQPSAPVPSKPFLLSAGPFYSACCGGSCRRPASPTAFSREEHGLPLLTQD
                     SNSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRRKLAISLGLKESQVKIWFQN
                     RRMKWRNSKEKEVLSNRCLQEVSLQEDRLAQPAAGCPPQCPSVWEVSQPHSSPSWREE
                     SPESVERLSQENSGVPEAGSLRGVLYLCPEKGPRDKDGLCSAI"
ORIGIN      
        1 cccggactct cattgcgctc attgttggcc gcatctgtca ctgtgggctg gatgacatga
       61 atggatgggt cggacacacc ttccatcccg gtcgtgaaaa cccagtccgg atctgcagac
      121 tgttccagga cgctgccaga ggcgctgctg agggctaagg acgcactccg cagcccggat
      181 cctgccggcg ccctgtcccg gtccccgcgc actcgctccc caaggctccc agggcagcgg
      241 gcgcgcacca tgctgcccag cgctgtggcc gcccaggcgg gagcctactg ggatgtggtg
      301 gcgtcctccg cactcctcgg cctccctgcg cctggctttg gcagtctggg caagagtttc
      361 ctgatcgaga acttgctgcg cgcaggggcc gggcccacgc acgcgccccc gtccccgcgc
      421 ccagctgcgg gtcccgagtg tccgcagctg cggtcgctgc ctgccaaccc agtgccgctc
      481 aagctgtgcc cggccggacc ctttggtgcg cgctgggcct tccagatgcc ccctggccgg
      541 gctccggggg agcgggacag tgccttccag ccctcagccc cagtgccttc caaacccttt
      601 cttctgagcg ccgggccatt ctactctgcg tgctgcggtg ggtcctgcag gcgcccagcc
      661 tcccccacag ctttttcaag agaggagcac gggctgcctc tgctgaccca ggactcaaat
      721 tccaaagctc gaagggggat tttaagaaga gctgtgttct cggaggatca gaggaaggcc
      781 ctggagaaaa tgtttcagaa gcagaaatac atcagcaaaa cagaccgaag gaaactcgcc
      841 atcagcttgg gactgaagga gtcacaggtg aagatttggt tccagaacag aaggatgaaa
      901 tggcggaatt ccaaagaaaa ggaagtgctc tccaacaggt gtctccaaga agtgagcctt
      961 caggaagaca ggctggcaca gcctgctgca ggctgtcctc cacagtgccc ttcagtgtgg
     1021 gaagtctccc agccacactc aagtccgagc tggagggaag agtctccgga atctgtggaa
     1081 agactgagcc aggagaattc aggggtccca gaagcaggtt cactccgagg tgtcttgtac
     1141 ctgtgtcctg agaagggacc tcgagacaag gatggactct gtagcgccat atgacaggag
     1201 cgtgctccat gttcattgaa aaggaccctt agccagtaac attgggatta aagccagtta
     1261 gaccgtgcct caaaactgcc ttaaactaat accttggtgt gatgtctgag ccattgccta
     1321 aggagagcca ccctactgct tcttatttag ccctagacta aggatcaatg tgtaaatgga
     1381 atagaacctt tcagaagata tgacaagact gaaagaagag ccaggatcag cccagagccc
     1441 gtctggttac ctgtatatgt gcctgtgcct acgtgtctgt atgtatatgc tcattaaata
     1501 catcagcaga aacta
//
