LOCUS       NM_001009644            2113 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus developing brain homeobox 1 (Dbx1), mRNA.
ACCESSION   NM_001009644 XM_218605
VERSION     NM_001009644.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Marklund,U., Hansson,E.M., Sundstrom,E., de Angelis,M.H.,
            Przemeck,G.K., Lendahl,U., Muhr,J. and Ericson,J.
  TITLE     Domain-specific control of neurogenesis achieved through patterned
            regulation of Notch ligand expression
  JOURNAL   Development 137 (3), 437-445 (2010)
   PUBMED   20081190
REFERENCE   2  (bases 1 to 2113)
  AUTHORS   Takahashi,M. and Osumi,N.
  TITLE     Pax6 regulates specification of ventral neurone subtypes in the
            hindbrain by establishing progenitor domains
  JOURNAL   Development 129 (6), 1327-1338 (2002)
   PUBMED   11880342
REFERENCE   3  (bases 1 to 2113)
  AUTHORS   Pierani,A., Moran-Rivard,L., Sunshine,M.J., Littman,D.R.,
            Goulding,M. and Jessell,T.M.
  TITLE     Control of interneuron fate in the developing spinal cord by the
            progenitor homeodomain protein Dbx1
  JOURNAL   Neuron 29 (2), 367-384 (2001)
   PUBMED   11239429
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Oct 12, 2022 this sequence version replaced NM_001009644.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB197138.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06621351 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-502               JAXUCZ010000001.1  108489880-108490381 c
            503-604             JAXUCZ010000001.1  108488971-108489072 c
            605-807             JAXUCZ010000001.1  108486853-108487055 c
            808-2113            JAXUCZ010000001.1  108484846-108486151 c
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..2113
                     /gene="Dbx1"
                     /note="developing brain homeobox 1"
                     /db_xref="GeneID:292934"
                     /db_xref="RGD:1308896"
     exon            1..502
                     /gene="Dbx1"
                     /inference="alignment:Splign:2.1.0"
     CDS             136..1143
                     /gene="Dbx1"
                     /note="developing brain homeobox protein 1"
                     /codon_start=1
                     /product="homeobox protein DBX1"
                     /protein_id="NP_001009644.1"
                     /db_xref="GeneID:292934"
                     /db_xref="RGD:1308896"
                     /translation="MMFPGLLAPPAGYPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDL
                     IRISRPPTYLPRSIPTASLSPPRQEAPTALADSGTSDLGSPGSGSRRGSSPQTALSPA
                     SEPTFLKFGVNAILSSAPRRETSPALLQSPPPKTFAFPYFEGSFQPFIRSSYFPASSS
                     VVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKTFQKQKYISKPDRKKLASKL
                     GLKDSQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGDE
                     EEDSPGASLAYHAPPDPRHLLEGPLPASPAHSSSPGKPSDFSDSDEDEEGEEDEEITV
                     S"
     exon            503..604
                     /gene="Dbx1"
                     /inference="alignment:Splign:2.1.0"
     exon            605..807
                     /gene="Dbx1"
                     /inference="alignment:Splign:2.1.0"
     exon            808..2113
                     /gene="Dbx1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaagacttg cagacgccca agtaggacgg ttaccaggat actgagctga agagggcacc
       61 gcgggagggg tgggaagcca ggagcttgcc ctccggccaa ggaaaggggg ctacagcacc
      121 agccccgctc tgaccatgat gttccccggc ctccttgcgc cccccgcggg ataccctagc
      181 ctcctgcgac ccacgcccac cttaacactg ccccagtccc ttcaatccgc attttctggc
      241 cactctagtt tcctagtaga agatttgatc cgcatcagcc ggccccccac ctacctgccc
      301 cgcagcatac ccactgccag cctgtcaccc ccgaggcagg aggcccccac agccctcgcc
      361 gactctggga cctcggacct gggctctcct gggtccggga gccggagggg cagttctcca
      421 cagaccgccc tctccccggc cagcgagccc acgtttctga agtttggggt gaatgccatc
      481 ctttcgtccg cgcccagaag agaaacttcg ccggctttgc tgcagagtcc ccctcccaag
      541 acgttcgcct ttccatactt cgaaggctcg ttccaaccct tcatcagatc ctcctatttt
      601 ccagcttcct ccagcgtcgt gcctattcct ggtaccttct cctggccgct ggccgctcgc
      661 ggcaagcctc gccggggcat gctgcgcaga gccgtgttct ctgacgtgca gcgaaaagcc
      721 ctggagaaga cgtttcagaa acagaagtac atcagcaagc cagaccggaa aaagctggct
      781 tccaagctgg gcttgaagga ctcgcaggtg aaaatctggt tccagaatcg acgcatgaag
      841 tggcggaact ccaaagagcg ggagctcctg tctagcgggg gctgccgaga gcagaccctc
      901 cctacaaaac tgaaccctca tccggacctc agtgatgtag gccagaaggg ccctggggat
      961 gaggaggaag atagtcctgg tgccagcctg gcctaccatg cacccccaga tcctcgacac
     1021 ctgctggaag ggccactgcc tgcctcgcca gcgcactcga gcagcccggg taaaccctca
     1081 gacttctctg attctgatga ggatgaggaa ggtgaggagg acgaggaaat cactgtgtcc
     1141 taggagcccc tgcagcggct ctggtgctgt tgcaattgga aactggagag ggaacgccca
     1201 cgtggccacc tctgtacagg atccaggatc ctgcctcttc tcagaacaga tccaccacct
     1261 cctcaggggt ggcgccaccc tttctgttgt tccagagaca tttccttgct gctgccacct
     1321 ctaaatagcc cttcccacag acgtgtgggt ctttttccca agggcaacat tggatctatt
     1381 tattgcaaat tattttacac cgtgtgcagg gcgtgtatgg agaggggtgt ctctagtctc
     1441 gctaccagcg cttaccgtga gccaggtcct atcaaacacc acgcctctga cccttaactt
     1501 cctggatggc cacctttccg gaagtatccg tcagccatcc gggtcttctc acataagaga
     1561 ttccacaaga gagtgagggc acagccacgc ctccctgcct aagggaaagc actaaggggt
     1621 tttcttgatg cttctttggc gggaggaagt gatttctctc tgtagagaag ggcgtgtctc
     1681 tgtttctatg ctactttgaa acatttaaac tttctctaca cctaggacat gtgcgccccg
     1741 gcgctctgct ttgtgttctt ttgctatttc aaggggagcc ttttgccgaa ctgccagctg
     1801 gcactggggt gtggacttgt ctgcctctct gacgcgcttc acccagcttt gctgtccatg
     1861 cggcttccat gcgttgtgct ctactgtgta tctatatttt gtatggatat tttatacgga
     1921 ggttattgtg aatgaccaca atgaagggct ggctgcgtat ttttctctgc aatggtcttt
     1981 aaagtttgaa agggtagctg tgtaacttca taatttataa ggaaatgctt attttgtatt
     2041 ttttaccatg tacagacttt ttatatatgt atatatgtat caaatggaca aatgccaaat
     2101 aaaaagtaga atg
//
