LOCUS       NM_001011950            1870 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus death associated protein 3 (Dap3), mRNA.
ACCESSION   NM_001011950 XM_215627
VERSION     NM_001011950.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1870)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1870)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 1870)
  AUTHORS   Harada,T., Iwai,A. and Miyazaki,T.
  TITLE     Identification of DELE, a novel DAP3-binding protein which is
            crucial for death receptor-mediated apoptosis induction
  JOURNAL   Apoptosis 15 (10), 1247-1255 (2010)
   PUBMED   20563667
REFERENCE   4  (bases 1 to 1870)
  AUTHORS   Kim,H.R., Chae,H.J., Thomas,M., Miyazaki,T., Monosov,A.,
            Monosov,E., Krajewska,M., Krajewski,S. and Reed,J.C.
  TITLE     Mammalian dap3 is an essential gene required for mitochondrial
            homeostasis in vivo and contributing to the extrinsic pathway for
            apoptosis
  JOURNAL   FASEB J 21 (1), 188-196 (2007)
   PUBMED   17135360
  REMARK    GeneRIF: Functional characterization of a similar protein in mouse.
REFERENCE   5  (bases 1 to 1870)
  AUTHORS   Berger,T., Brigl,M., Herrmann,J.M., Vielhauer,V., Luckow,B.,
            Schlondorff,D. and Kretzler,M.
  TITLE     The apoptosis mediator mDAP-3 is a novel member of a conserved
            family of mitochondrial proteins
  JOURNAL   J Cell Sci 113 (Pt 20), 3603-3612 (2000)
   PUBMED   11017876
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC085878.1 and AA964664.1.
            
            On Sep 1, 2009 this sequence version replaced NM_001011950.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085878.1, FQ230674.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1832              BC085878.1         1-1832
            1833-1870           AA964664.1         1-38                c
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..1870
                     /gene="Dap3"
                     /note="death associated protein 3"
                     /db_xref="GeneID:295238"
                     /db_xref="RGD:1305339"
     exon            1..312
                     /gene="Dap3"
                     /inference="alignment:Splign:2.1.0"
     CDS             310..1500
                     /gene="Dap3"
                     /note="28S ribosomal protein S29, mitochondrial"
                     /codon_start=1
                     /product="small ribosomal subunit protein mS29"
                     /protein_id="NP_001011950.2"
                     /db_xref="GeneID:295238"
                     /db_xref="RGD:1305339"
                     /translation="MRTKTMLTGMTRFFSRVQKLDPRCFLHVSVQAPQNNQVPAERPR
                     AVSRTSDSDPAKHGEQHEGQHYSIPPQDLKTVFPHGLPPRYAMQVKTFGEACLMVRKP
                     ALELLGYLKNTNFAHPAVRYLLYGEKGTGKTLSLCHAVHFCAKSDWLILHIPDAHLWV
                     KNCGELLQSTYNKQRFDQPLEASTWLKNFKTTNERFLGQIKVQEKYVWNKRESTEKGS
                     PLGEVVEQGLTRVRNATDAVGVVLKELKTQSSLGLFHLLVAVDGVNALWGRTTLKRED
                     RTLIAPEELALVRNLRKMVKNDWHGGAIVLSLSQTGSLFKSRTAYLPHELLGKEGFNA
                     LEPFLPILISNYNPKEFESSFQYYLENNWLQHEKASTEEGRKELKFLSNCNPEQLERL
                     CASL"
     exon            313..366
                     /gene="Dap3"
                     /inference="alignment:Splign:2.1.0"
     exon            367..471
                     /gene="Dap3"
                     /inference="alignment:Splign:2.1.0"
     exon            472..573
                     /gene="Dap3"
                     /inference="alignment:Splign:2.1.0"
     exon            574..682
                     /gene="Dap3"
                     /inference="alignment:Splign:2.1.0"
     exon            683..775
                     /gene="Dap3"
                     /inference="alignment:Splign:2.1.0"
     exon            776..906
                     /gene="Dap3"
                     /inference="alignment:Splign:2.1.0"
     exon            907..987
                     /gene="Dap3"
                     /inference="alignment:Splign:2.1.0"
     exon            988..1146
                     /gene="Dap3"
                     /inference="alignment:Splign:2.1.0"
     exon            1147..1206
                     /gene="Dap3"
                     /inference="alignment:Splign:2.1.0"
     exon            1207..1296
                     /gene="Dap3"
                     /inference="alignment:Splign:2.1.0"
     exon            1297..1414
                     /gene="Dap3"
                     /inference="alignment:Splign:2.1.0"
     exon            1415..1855
                     /gene="Dap3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggacacgc ccgcgcggag gaggcttgcc accgggtcgg gaatctcttg agtagagagc
       61 taaggaacct aggcaccgac ctcctgggcc gggccgccgc aaagccgagg cttgctaccc
      121 gcttccggcc gcggggcggg tggcgcggtg cccctccgct gggctgtggt tgcagccgcg
      181 gcgactgcgc gttgggtagc ttcctgccac acgacccgag cttgcttcac agctgcagga
      241 cgggcgcctc ggatccagcc gctggcggtg tgtgcgggtc accgaaacag aagtactagt
      301 ggtggactca tgagaacaaa gaccatgctg acaggaatga caaggttttt ctccagggtc
      361 cagaagttgg acccgagatg ttttttgcac gtgagtgtcc aagcacctca gaacaatcag
      421 gttccagctg agcgtccgag agctgtttcc cgcaccagtg acagtgaccc agctaagcac
      481 ggggagcagc atgagggtca gcactacagc atccccccac aggatctgaa gacggtgttt
      541 cctcacggcc tgcctcctcg atacgcaatg caggtgaaga cttttggtga agcttgtctg
      601 atggttagga agccagctct cgagcttctg ggctacctga aaaataccaa ttttgctcat
      661 ccagctgtac gatatcttct ctatggagag aaggggacag gaaagaccct cagtctctgt
      721 catgctgttc atttctgtgc aaaaagtgac tggctgattc tgcacatccc agatgctcat
      781 ctttgggtaa aaaactgtgg ggagctgcta cagtccactt acaacaaaca gcgctttgac
      841 caacccttag aggcctctac ctggctgaag aatttcaaaa ctaccaacga gcgctttctg
      901 ggtcagataa aagttcaaga gaagtatgtt tggaataaga gagaaagcac tgagaaaggc
      961 agtcctctgg gagaagttgt cgaacagggc ctaacgcgag tgagaaacgc cactgacgct
     1021 gttggggttg tgctgaagga gctgaagacg cagagctccc taggactctt tcacctcctg
     1081 gtggctgtgg atggagtcaa cgccctctgg ggaaggacca cgctgaaaag agaagataga
     1141 accttgattg ccccggagga actcgccctt gtccgcaacc taagaaaaat ggtgaaaaat
     1201 gactggcacg gaggagcaat tgtgctgagc ttgagccaaa ccgggtctct cttcaagtcc
     1261 agaacagcct atttgccaca tgagctgctg ggaaaggaag gatttaatgc cctggagcct
     1321 tttcttccca tcctcatttc caactataat ccaaaggaat ttgaaagttc ctttcagtat
     1381 tacttggaga acaactggct tcagcatgag aaagcttcaa cagaggaagg gaggaaggag
     1441 ctgaagttcc tgagtaactg caaccctgag cagctagagc ggctctgcgc ctcactgtga
     1501 gtgcggacat ggagcggcaa gccaagccgg aagacgcctt ccttcaactg cctcgcatga
     1561 cggaggccca cggtcccaag ccaagcagcc cgacggcact gacggacatg tgacaatggg
     1621 ctgtccggtt gtcctacaag gaataccagt tttctgttag gatttttata ttaaaagtag
     1681 atctgtttct aagtattgta ttggatttgc cataaggaaa gttctacact ggccaggttc
     1741 ggtttctttg gcattgtttg ttagcatctg aagaaactca gcgctacaga aattactagt
     1801 tctgtcttct ggaattaaat caattcctcc tagacaggga actcttctta tacaaaaaaa
     1861 aaaaaaaaaa
//
