LOCUS       XM_017602349            6289 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus dachshund family transcription factor
            2 (Dach2), transcript variant X1, mRNA.
ACCESSION   XM_017602349
VERSION     XM_017602349.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017602349.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017602349.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6289
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6289
                     /gene="Dach2"
                     /note="dachshund family transcription factor 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 2 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:302333"
                     /db_xref="RGD:1561687"
     CDS             138..1439
                     /gene="Dach2"
                     /codon_start=1
                     /product="dachshund homolog 2 isoform X1"
                     /protein_id="XP_017457838.2"
                     /db_xref="GeneID:302333"
                     /db_xref="RGD:1561687"
                     /translation="MAEAMKLQKMKLMAMNTLQGNGSQNGTESEPDDLNSTTGGSESS
                     WDKEKIQSPLAAPGAQHGIAHAALAGQPGLGGAPTLNPLQQNHLLSNRLDLPFMMMPH
                     PLLPVSLPPASVAMAMNQMNHLNTIANMAAAAQIHSPLSRAGASVIKERIPESPSPAP
                     SLEESHRPGSQTSSHPSSSVSSSPSQMDHQSERMVMMPNNREEIIIDQDNGQSIKKFQ
                     RDNKDIQLSQHHLLNTFLHWIELAPLSKKSLLHQKEVPAQIPMMKSPLDKIQLAPGQA
                     LPPGFPGPFIFADSLSSVETLLTNIQVNNISINKINGLLKVALDNARIQEKQIQQEKK
                     ELRIELYREREIRENLERQLAVELQSRSTMQKRLKKEKKAKRKLQEALEFESKRREQV
                     EQALKQATSGDSGLRMLKDSGIPDIEIENSGTPHDSAAMQA"
ORIGIN      
        1 ccaacagttc aaggcctggc aggcccccta agcgttcttt gggagtgttg caagataatg
       61 cacgacttct gccccatgca gtcccaggcc tcttatcacc aggacttatc actccaacag
      121 gtataacagc tgcagcgatg gctgaggcaa tgaagctaca gaaaatgaag cttatggcaa
      181 tgaatactct tcagggtaat ggaagccaaa atgggactga gtctgagcca gacgacctta
      241 attccaccac aggtggaagt gaatcatcct gggataaaga gaagatacaa tctccacttg
      301 ctgctcctgg agctcaacat ggaattgctc atgcagctct tgctggccag ccaggccttg
      361 gtggtgctcc taccctcaat ccacttcagc agaatcacct tctaagcaat cgtctggatc
      421 tcccatttat gatgatgcct catcccctac ttccagtcag cttacctcct gcatcagttg
      481 ccatggcaat gaatcagatg aatcatctca atactattgc caacatggct gctgcagccc
      541 agattcacag tccactctcc agagctggtg cctctgttat aaaggaacgg attccagaga
      601 gtccttctcc tgctccatct ctggaagaga gtcatcggcc tgggagccag acctcctccc
      661 acccaagcag cagtgtgtcc agttctcctt cacagatgga tcatcaatct gaaagaatgg
      721 ttatgatgcc caacaataga gaagaaatta ttattgacca agataatgga caaagcataa
      781 aaaaattcca aagggataat aaagatatcc aattgtccca gcaccatttg ttgaacactt
      841 ttcttcactg gattgagttg gcaccattat caaaaaaatc actcctccat caaaaagaag
      901 taccagctca aatcccaatg atgaagtcac ccttggacaa gatccagttg gctcctggac
      961 aggcattgcc ccctggattc cctggaccat tcatttttgc tgatagtttg tcctctgtgg
     1021 agactctgtt gaccaacatt caggtcaaca atatttctat aaacaaaata aatggtctac
     1081 taaaagtggc tttggataat gctcgcatcc aggagaagca gattcagcaa gaaaagaagg
     1141 aactacgaat agagctctac agagaaagag aaattagaga aaacctggag agacaacttg
     1201 cagttgagct tcaaagcaga agtacaatgc aaaagcggct gaaaaaggag aaaaaagcta
     1261 agagaaaact tcaggaagct ttggaatttg aatcaaagcg ccgagagcaa gtggagcagg
     1321 cacttaaaca agctacatct ggtgacagcg gtctgaggat gttgaaagat tctggaattc
     1381 cagatattga aatagaaaac agtgggacgc ctcatgacag tgctgctatg caagcctgaa
     1441 cactgatgcc ggaacttcaa gtgatcatag aaacggatag ggtgctgtag cagttacctg
     1501 cttacttagt gttgtgattc tttagaattc atgctcaaat tcttttaaaa tatggaacac
     1561 tcaattacta tttgttcata attgatgaat agaaccttga acacatagga aaaatgtact
     1621 agagaatggt ctttccaaga ttttacggga caattatgat gactaaatgt gacactttat
     1681 agttgcttta cccatttatt tcaatgagtt cctagtgctt cacaaacatt atcacattta
     1741 tccatacagc aggtttgtag tgggtaagta ggtggcacaa ttttgaagat ggattaaatg
     1801 atatttctag attgtatgta agaaaataaa gtgtagaaaa acctactttg agtcatgcct
     1861 attatggaat aactttctat ttctccaata tgttatttaa cagtaccttt attagcagac
     1921 aatttattgg tacaaatgtt gtcatagcct gtgagatcac tttgtagaag aaagtgtgcc
     1981 tgatttgttc tcttaaaaaa atatcataga gagctttaat tcttaaatca tgccacactt
     2041 atattttcct tttaactgat gaggtagagc aagttgtcta ctccctttct actagcacat
     2101 ccctcatcta taaagaagac aatgttaaaa actgatccca gcctactcaa tatgccttct
     2161 ttcttacttt tttcttcctt tcgatcccaa actttgcttc ttcttcataa tgataccaac
     2221 agaaaacaaa cataatggta tgaataaagc ccacagatac aagaaaaaga aagaaagaaa
     2281 ttataggtca ttttcattgt gaacatttat actattcatc ctgtggtcta aacataatca
     2341 ggtaactaac atttccaaga gatatataaa tggttcattt ggcctgaatt gctcaggaag
     2401 tgtcttagaa tatttttgac aatttactta tttaaagacc tggccacaaa ctggtgatat
     2461 taattaggat cattttcaca cctttcaaga atctaataca ttagtatttg agtgatcaaa
     2521 gtcatttaat gacatttttc aaacattcac attataccat caaaatctta ctcattgggt
     2581 agtatctgcc ctagtattat attttttgtg acaaaagttc tactcacgta aaatatcaac
     2641 taatatttta ttcatttttc taataattaa ttccttgtga ccacatatgt aatttctttt
     2701 ggaatgacca ctagacttaa ataatttaaa aaataataca ttaatgcata tcaatatgat
     2761 aggttacttg tttcacatcc tgaaatgttt ttcgaagtta taaagattct tgcttttggt
     2821 actttctatg atgcacacat gatctactgg tataaaatct ataatgtttc acttgattgc
     2881 atcaaaataa tgccaactta gaaacaattg atgaacaatg aaataaaatt ggtaatatca
     2941 aatatatgaa ctaaataaca atgatttatg accaaaggta taacatctag agtcaccttt
     3001 tcatcaacaa agaacatgta ctgaatgata cagaatgttt aatagaattt ttaaatcagg
     3061 tcacttaaac atacagtatt gtcttttttc actattttag ttgaaaagtc agaatcttcc
     3121 ttttacctgg cattttccta tttgtatgcc ctttttaatg gcacttgatg gtagttgttc
     3181 ttttttataa actttagatg tataatacag aaggccagta cttactggat ctgaaacagc
     3241 caaatgtggc tcttgatgga tttaaccttt catgagaggg tgtcctagtg gagaagataa
     3301 tactaactcc ctatgccatc catgctaagt taggcatttc tacattacga gaaggattac
     3361 ccaaccctat tttttactta aaatactatc atacctgtag atacataatt ccccattttg
     3421 ctctttggat aaatattgaa gcagtaaggt aactgtcagc tctccacaag tgtcaaagta
     3481 tgtccctcct tatgactgtt taagagcctg acattctgct ggagaggagc tattcattgc
     3541 ttttcctaat ctataatcat gtttgcatac agaatgtata tgagatagta tctgtttgat
     3601 gatcaagtat aaaccctctt aaaaaattga aggagtcaac tactaattag ctgtttccta
     3661 ttcctaatga agtgagcatg gcagatttgg attaaaattc agctacagct ctcttctgtt
     3721 tatggttcca gatgtttttg ttttatctag gagtttactt tgacagctac tactaaatga
     3781 taaatcactc atattatagc tgaaatgcat tttgaaattg aaatatggca aactttgaga
     3841 ttgttccaag gaacagcatc gattgctagg ccattacttg ttccttcctc ataatcagtc
     3901 tgtattggaa tactcacagc agtaacagaa aatgtcttaa taatatacag cctgccatgc
     3961 tgtttggtta ctactatcgt taaaatgtgg ggaagtttta ctaatggcat ctcaacttac
     4021 tgtattttga gtgatacaat tggttgacac cataatgttg tcttcttggt ggcctagtat
     4081 gtcttttgat ttgcaagctg atgtgcaaac tattcctgat aagctttgta agtgggcgca
     4141 ttaaatgtaa gttgtggcca gaagtgtttg tctcttgtaa aagataaaaa attaaacaaa
     4201 ataaaatgaa agatttttca aaaactgcat ttttccaaaa aaaaaaaagt gactgtgttt
     4261 tccattcatt gcgatgttta tatgactttt taggtgacat tgtttatttt acccttgctt
     4321 tcaaatttgt aatgttcaca ttttgtactg catgattcaa gctttattat tattgtataa
     4381 aatttaaatc ctagtaaaaa tgaatgacat ttgatgttga agagcttttt attgatttgc
     4441 agactgtgta tacagaagat gaggtggatt atagaactga ttacttcatt ggtcaatatc
     4501 atcacagaaa cgaaagatgt agagcctagg acctcattac agagctcaga ctgcatgtcc
     4561 aaaagattag tctaaatact tttctggggt taaagattac caaactatta aaaacaaaac
     4621 gatttttatg ttctggtttc tgaaacatca agttagttcc atggctttct tggacaaatg
     4681 tgtatttacc tgcaaataaa gacctgctct agcttttcta atttacacag aatccaagtc
     4741 tttcttctgt taccttatag ctccttcatt tttggttttg aaattaatgc catgaaattg
     4801 cattaattta tttaatatgc aatattttat aagaaagtat tttagaaatt ttatatactt
     4861 tcctccttat aactcaaaac cttttacagt atacatttat attttaaaca aggagtgtca
     4921 gtctccctat acacgaagac acgtttgatt gacaaagatc taattttaat tgtttcttga
     4981 gcacaagtaa tagatttgtg ctgatttata gacacattat tttctgattc ctgttctgta
     5041 accaaaggct aatttttgtt atttggctag tgaaatatgc aggtcataag ccattataat
     5101 agaaaagagc aactttaagc acaaaatggc agaatacaat ttgtttttca ttttattttt
     5161 tcttttgttg gatatttttt atttacattt caaatgttat tcccttttct ggtttcccgg
     5221 acataagccc cgtatcccat gtttttcatt ttcaataata aactttatta atcagttggt
     5281 ctctaactag cagatgatac gcagtttata ttacaaatat tttaatgaat attggtttga
     5341 ccacttaaag ttcaaatgat attgaaaagt agtcaccata tggtatgcac catcttaggg
     5401 ctaacctggg cagtgaaaat tgtaaatgga caacgctgtc ataattttag agccaaacca
     5461 ggtaatgtct ttccttctga ttttgataaa gcacagaaaa atgtaatatt atgtacaaag
     5521 gtaaaagaaa tatagatctt tatagacatt ataaaatagt ttatgaaaag agtctttatc
     5581 agttaccatg tcttcagtac tgtgtaaaga aggggagctg tagtatgaaa ttcacttgaa
     5641 ggatctttga aatttgacac attaacttaa attaaaattt accgatatta aatcaatact
     5701 gttgcatcaa atcatcttag ggtactgaag actgacattt tagtcctttc atacctatgc
     5761 ttcagctatg gtccacagaa gaactaacat gttttctttt ttttaaagga ggtaactatt
     5821 actgtttagc aatggcacag cagttgtgtt cagcctgaaa ggtcctcgct ggctttacat
     5881 taaagaagat acttgtgatt ccagtatatc tctgaaaata tccatcatgg agttatttca
     5941 gttgtgctta tcagcaaagt tctgtaactg aatcatattt tctgtgttac attaagtaaa
     6001 agaggattat gtgtatattt agaaagcaat gatgtaatct ttgtccttgc attagattca
     6061 ccaatttaag accatgagat aaaccctgat gacttaagta tattgaccat atttgatgct
     6121 tttttatgct catttctgct tggctttttg tccttcaaaa aatatagtag tatcttagag
     6181 actagaaact tatatgtatg gtttctctgt tataccacat gttaagttac agtacacttt
     6241 gtttacaatg tacttgctaa ttttcagtat aaataaaagc attttgaat
//
