LOCUS       XM_039093963            5494 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus dachshund family transcription factor
            1 (Dach1), transcript variant X1, mRNA.
ACCESSION   XM_039093963
VERSION     XM_039093963.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 31, 2024 this sequence was replaced by
            NM_001427593.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5494
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5494
                     /gene="Dach1"
                     /note="dachshund family transcription factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 ESTs, 1 long SRA read, 4 Proteins, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 16 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:306096"
                     /db_xref="RGD:1592073"
     CDS             531..2780
                     /gene="Dach1"
                     /codon_start=1
                     /product="dachshund homolog 1 isoform X1"
                     /protein_id="XP_038949891.1"
                     /db_xref="GeneID:306096"
                     /db_xref="RGD:1592073"
                     /translation="MAVPAALIPPTQLVPPQPPISTSASSSGTTTSTSSATSSPAPSI
                     GPPASSGPTLFRPEPIASSASSSAATTVTSPGGGGSGGGGGSGGNGGGGGGSNCNPSL
                     AAGSNGGGGGVSAGGGGASSTPITASTGSSSSSSSSSSSSSSSSSSSSSSSSSSSCGP
                     LPGKPVYSTPSPVENTPQNNECKMVDLRGAKVASFTVEGCELICLPQAFDLFLKHLVG
                     GLHTVYTKLKRLEITPVVCNVEQVRILRGLGAIQPGVNRCKLISRKDFETLYNDCTNA
                     SSRPGRPPKRTQSVTSPENSHIMPHSVPGLMSPGIIPPTGLTAAAAAAANAAIAEAMK
                     VKKIKLEAMSNYHASNNQHGADSENGDMNSSVGSSGGSWDKETLHSPPSQGSQAPVAH
                     ARIPAAYSLPVSHPLNHLQHSHLPPNGLELPFMMMPHPLIPVSLPPASVTMAMSQMNH
                     LSTIANMAAAAQVQSPPSRVETSVIKERVPDSPSPAPSLEEGRRPGSHPSSHRSSSVS
                     SSPARTESSSDRIPVHQNGLSMNQMLMGLSPNVLPGPKEGDLAGHDMGHESKRIHIEK
                     DETPLSTPTARDSMDKLSLAGHGQPLPPGFPSPFLFPDGLSSIETLLTNIQGLLKVAI
                     DNARAQEKQVQLEKTELKMDFLRERELRETLEKQLAMEQKNRAIVQKRLKKEKKAKRK
                     LQEALEFETKRREQAEQTLKQAASADSLRVLNDSLTPEIEADRSGGRADAERTIQDGR
                     LYLKTTVMY"
ORIGIN      
        1 cagagctcct cccctctgca ccgtgtgaca acaacaactc gtccagccgg cagcctgcac
       61 tttcagctca ttttctctct gtcattcccc tctcaatctt tgatcaatgt acttgccagg
      121 gagaacccaa gtccctcaac cctcctcctt ttcaccttca tccttaactt tgtgctagag
      181 cgggacccac acaccaccag ccgaccctcc ccgccccccc cgcctccccc ccagagcagc
      241 ccgcgatccc agccccgaga gaggactcgc atttcgactt gcgggacact tttgtgcgtt
      301 tctctctcga gcgcctctcg cgctcgcccc tcctgcgctc gctctttctt accctcacct
      361 ccttttctcc tcttctctcc ctcttcccaa ctagggttct ttcctagagt gcttgttgtc
      421 tctgcccccc cctcgatcct tgtccccctt tctccccctt cccctctggg gggtgtgtgg
      481 caacttttcc ccctcgcttc tcctccttct gtttcccctt atatgtgacc atggcagtgc
      541 cggcggcttt gatccctccg acccagctgg tcccccctca acccccgatc tccacttctg
      601 cttcctcctc tggcaccacc acctccacct cctcggcgac ctcgtcaccg gctccatcca
      661 tcggaccccc ggcgtcgtct gggccaactc tgttccggcc ggagcccatt gcctcttctg
      721 cttcttcttc agcggcgacc acagtcacct ctcctggtgg cggcggcagc ggaggcggcg
      781 gtggcagcgg cggcaacgga ggcggcggcg gcgggagcaa ctgcaaccct agcctggcgg
      841 ccgggagcaa cggcggcggc ggcggcgtta gcgctggcgg cggcggcgcc tccagcaccc
      901 ccatcaccgc gagcaccggc agcagcagca gtagcagcag cagcagcagt agcagcagca
      961 gcagcagcag tagcagcagc agcagcagta gtagcagcag ctgcggcccc ctccctggga
     1021 aacccgtgta ctcaaccccg tccccagtgg aaaacacccc ccagaataat gagtgcaaaa
     1081 tggtggatct gagaggggcc aaagtggctt ccttcacggt ggagggctgc gagctgatct
     1141 gcctgcccca ggctttcgac ctgttcctga agcacttggt ggggggcttg cacaccgtct
     1201 acaccaagct gaagaggttg gagatcacgc cggtggtgtg caatgtggaa caggttcgca
     1261 tcctgagggg actgggggcc atccagcccg gagtcaaccg ctgcaaactc atctccagga
     1321 aggacttcga gaccctctac aatgactgca ccaacgccag ttccagacct ggaaggcctc
     1381 ctaagaggac tcaaagtgtc acttccccag agaactctca catcatgcca cattctgtcc
     1441 ctggtctcat gtcgcctggg ataattccac caacaggtct gactgcagct gctgcagctg
     1501 ctgccaacgc cgccattgct gaagcaatga aggtgaaaaa aataaaatta gaagctatga
     1561 gcaactatca tgccagtaac aaccaacatg gagcagattc tgagaacggg gacatgaatt
     1621 caagtgttgg cagcagtggt ggttcttggg ataaggaaac actgcactct cccccatccc
     1681 aaggatctca ggctcctgtt gcacatgccc gcattcctgc agcgtatagc cttccagtta
     1741 gccatcctct caaccatctg cagcacagcc accttccgcc aaatggactg gaacttcctt
     1801 ttatgatgat gcctcaccct ctaattcctg tcagcctacc tccagcgtct gtcaccatgg
     1861 caatgagtca gatgaaccac cttagcacca ttgcaaacat ggcggctgcg gcacaagttc
     1921 agagtcctcc atccagggtg gagacatctg ttattaagga gcgtgttccc gacagtccct
     1981 caccggctcc gtctctggag gagggccgaa ggcctggcag ccacccatca tcacaccgca
     2041 gcagcagcgt gtctagctcc ccagcgcgga ccgagagttc ttccgacaga atccctgtcc
     2101 atcagaacgg gctgtccatg aaccagatgc tgatgggttt atccccaaat gtgcttcctg
     2161 ggccaaagga gggggatttg gctggtcatg atatggggca tgagtcaaaa cggatccaca
     2221 ttgaaaaaga tgagacccca ctttctacac caaccgcaag agacagcatg gacaaacttt
     2281 ctctggctgg gcatggacaa cctctacctc cgggcttccc atcccccttt ctgtttcctg
     2341 atggcctgtc ttccatagag acccttctca ctaacattca gggcctcttg aaagttgcca
     2401 tagataatgc cagagctcaa gaaaaacagg tccaactgga aaaaacagag ctgaagatgg
     2461 attttttaag agaaagagaa ctaagagaaa cactcgagaa gcagctggcc atggaacaaa
     2521 agaacagagc catagtccaa aagaggctaa agaaggaaaa aaaagcaaag agaaaactgc
     2581 aagaagcact agaatttgag acaaagcgcc gagagcaagc agagcagaca ctgaaacaag
     2641 cagcttcagc ggacagtctc cgggtcttaa atgactccct gaccccagag atagaagctg
     2701 accgcagtgg cgggagagca gatgctgaaa ggacaataca agatggaagg ctgtatttga
     2761 aaactaccgt catgtactga tcacttcgtg ttgaagaaac cctgtcatct actacagaac
     2821 tctggaggcc gacactcatc gttggaaagt tcaggagaaa aacaaagtcc gtataaaaga
     2881 acttctttca attttgtgtg ttaacgctct ttgtcattta agtattccac aacagcagaa
     2941 aagtttcctc cattgagttg tttcacctgt ggttcacacc agagactgag aacgtttgta
     3001 gatgtacaca tatcaacctc cttacactta ttaactctcc tgtgctgctg gacacttgtg
     3061 tacagagtta aaggcaggtc tgaggaagac caagcgttgg tttgttttct tttcctcctt
     3121 aatggaatga accattttct tttcctcttc tgacagttct gtaaccgagc acatcaactg
     3181 acttcgtagc agtgttcacc cagacttaca gaattgtgtc ccacagaaac cagcaagaat
     3241 atatgggatg aactcttaag gggcgtaaag gattctgggg tgggagggaa cgagagaagt
     3301 aagagtattc tgttacatgc aattttaaac tctactataa ttgcaggttt tgtcctgaag
     3361 acctttttca tatactttct gaaagaccaa caaacagatg ttaacgactc aatgaaatta
     3421 cattttgcat atctgaaaaa gaagcattga atataagcca aacggtttca ctgatggtct
     3481 ctttttctta aagataaaat atatatataa atatatatat aaaatataac atgttttcat
     3541 tccaaactgg tagcggtata taggattaaa aataataatg ttgcttcttt atccaaatgg
     3601 ttggtcacat gtacaatata taaacataaa actcacagaa agggattatg tatgcagtag
     3661 tatactagcg tttaggaaat gaaaatttta gaaaatatgt tttgtcaccc tgttggtcag
     3721 aaagatgtct ttctggtttt aacgcatgca ggcatgtaaa tatttgtctg gagtcacagt
     3781 attaatgaat gagatcttat gcatctggtg acatcagaac tctgtgtcgg ccatttttat
     3841 ttgtatattg atccctggtg agtgccccaa actgcacttc agaggatgaa ttgtggctga
     3901 ccagtaaatc aaaacaccag agatattttt atatgttaat gtcatattat gttaatgttg
     3961 ctgaaaaaca aaacttaaca agcccttggt gtattggtcc gaaaccatgt agccctgagt
     4021 ggtgaaggta aagtgtgcag tgcttctcac cctgttcaga ggtgggtggg tctacatgtt
     4081 cttttcactg tcgtttggaa agttacagta tgtgttttca tatctgtgca tataactgga
     4141 agtaaagctt caaacagagc tcatcccatg ctgaagttac ctttgcgttt atacattggg
     4201 agtaaccgtt ctgaagacgt acataagtca cgcagttgct ctacactttg atttcctgtc
     4261 attttgaagt tttgtgatta taatattttt atgaccataa aaaaacaaaa taatcattct
     4321 aaagaagcta gcaccagtgt ttaaggatag ttttgattgg gtaattatta tttggttaag
     4381 aataaaacat gtcctattat ggatgtcact gagctcctat aatttttagt cttccttgca
     4441 gttctgaaac ctaactaatt cttggctgta acttgctatt aactgtttaa gttcattttt
     4501 ttaatacagc aaagggttat atgtacagtt cttttagctt gcattaaagg ggagtaatat
     4561 tttaatttaa aatattgtta gtaactgctt tgtagaaacg gtttgctgag cataattctt
     4621 ccatggtcat gttttgttgt ttgagcaaaa gagattctat tcttacttac atgtattttt
     4681 gttggttttt ccctacatac agtctttaaa tgattacgat tcttaaaatt ggatggattt
     4741 ttggaaaggt tgggcgtcat aatttttctt tttaacagtc tgcttttttt tttgtttgtt
     4801 ttttaagact acaacttacg taggtaggag agtttgccat tgctctgctc ctggcaaatg
     4861 gggtaaatag ttttaaaata tgtacgcgaa agacctctga gaatgcttta gtgtttggtt
     4921 cagcgtaaaa ggaaatttta ggattgaaga caaaagctgt ccactatatg ttaagagact
     4981 cttattaacc gttgtaaata ttgcaattca caaaatgtta ttgtaagttt gtaacttaat
     5041 ttttccctct ttttagttaa acaggtttgt ttaggaattt gtgttttggt gtaagcaagt
     5101 aaaattgtgc ccattttatg gttcccatgc ttttgtaatc ttacaaatat taacgtctag
     5161 ttgttctata ttataaccat atttgcgctc tatgcaagcc ctcggaacag aacatactca
     5221 tcttcatgta ggacctatga aaattgtcta tttttatcta tatatttaaa gttttctaaa
     5281 aatgaaaaaa ggttattacg aattttgttg tacaaaatct gtacaaaaat ctgtttttac
     5341 atcataatgc aagaattgga aatttttcta tggtagccta gttatttgag cctggtttca
     5401 atgtgagaac cacgtttact gttattgtat ttaattttct ttttcttttc aacaatctcc
     5461 taataaaaat gtctgaaatc gccttgtgac ttta
//
