LOCUS       XM_039112262            5862 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus dishevelled associated activator of
            morphogenesis 1 (Daam1), transcript variant X3, mRNA.
ACCESSION   XM_039112262
VERSION     XM_039112262.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039112262.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5862
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5862
                     /gene="Daam1"
                     /note="dishevelled associated activator of morphogenesis
                     1; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 55 ESTs, 5 long SRA reads, 12 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 47 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:314212"
                     /db_xref="RGD:1305119"
     CDS             187..3423
                     /gene="Daam1"
                     /codon_start=1
                     /product="disheveled-associated activator of morphogenesis
                     1 isoform X1"
                     /protein_id="XP_038968190.1"
                     /db_xref="GeneID:314212"
                     /db_xref="RGD:1305119"
                     /translation="MAPRKRGGRGISFIFCCFRNNDHPEITYRLRNDSNFALQTMEPA
                     LPMPPVEELDVMFSELVDELDLTDKHREAMFALPAEKKWQIYCSKKKDQEENKGATSW
                     PEFYIDQLNSMAARKSLLALEKEEEEERSKTIESLKTALRTKPMRFVTRFIDLDGLSC
                     ILNFLKTMDYETSESRIHTSLIGCIKALMNNSQGRAHVLAHSESINVIAQSLSTENIK
                     TKVAVLEILGAVCLVPGGHKKVLQAMLHYQKYASERTRFQTLINDLDKSTGRYRDEVS
                     LKTAIMSFINAVLSQGAGVESLDFRLHLRYEFLMLGIQPVIDKLREHENSTLDRHLDF
                     FEMLRNEDELEFAKRFELVHIDTKSATQMFELTRRRLTHSEAYPHFMSILHHCLQMPY
                     KRSGNTVQYWLLLDRIIQQIVIQNDKGQDPDSTPLENFNIKNVVRMLVNENEVKQWKE
                     QAEKMRKEHNELQQKLEKKERECDAKTQEKEEMMQTLNKMKEKLEKETTEHKQVKQQV
                     ADLTAQLHELNRRAVCASVPGGPSPGAPGGPFPPSGLGSLLPPPPPPLLSGGALPPPP
                     PPLPPGGPPPPPGPPPLGGILPPPGAPVSLTLKKKNIPQPTNALKSFNWSKLPENKLE
                     GTVWTEIDDTKVFKILDLEDLERTFSAYQRQQEFFVNNNSKQKEADAIDDALSSKLKV
                     KELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSD
                     IDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIR
                     SSSEEVLRSSALKQLLEVVLAFGNYMNKGQRGNAYGFKISSLNKIADTKSSIDKNITL
                     LHYLITIVENKYPKVLNLSEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQK
                     SQPPQPGDKFVSVVSQFITLASFSFSDVEDLLAEAKELFTKAVKHFGEEAGKIQPDEF
                     FGIFDQFLQAVTEAKQENENMRKRKEEEERRARLEAQLKEQRERERKMRKAKESSEES
                     GEFDDLVSALRSGEVFDKDLSKLKRNRKRISNQVTDSSRERPITKLNF"
ORIGIN      
        1 gggtgccatc ttgtatccta tcagaggagg cgaggatgat gtcacctgcg agttggtaac
       61 ctacgagcgg ctgtgaaggg aactgtttaa ccggatccca ttgtaccggg aacgcagagc
      121 ggcctttcca gcatgcagcg gctgctcaga gtgttgtaat atcaagaaat aggagaaaat
      181 tcaaccatgg ccccaaggaa gagaggcgga agggggattt catttatctt ttgctgtttc
      241 cgaaacaatg accacccaga aatcacatat cggcttagga atgatagcaa ctttgcactt
      301 cagacaatgg agccagcact gcccatgccc cctgtggagg agctggatgt catgttcagt
      361 gaacttgtgg atgaactcga cctcacagac aaacataggg aggccatgtt tgcacttcca
      421 gcagagaaaa agtggcagat atactgtagc aagaaaaagg accaggaaga aaacaaggga
      481 gcaacaagtt ggcccgagtt ctacattgat cagctcaatt ccatggctgc tagaaaatct
      541 ctgctggctt tagagaagga agaagaagaa gagaggagta aaaccatcga gagtctaaag
      601 acagcactga ggacaaagcc catgaggttt gtaaccagat tcatcgactt ggatggcctg
      661 tcatgtattc tcaactttct gaagaccatg gactatgaga cctccgagtc tcggatacat
      721 acctccctca ttggctgtat aaaggcacta atgaacaact ctcaaggccg ggcccacgtc
      781 ctggctcatt ctgagagtat taatgtaatt gctcagagtc tgagcacaga gaacattaaa
      841 acaaaggtgg ccgtgctgga aatcctgggc gctgtgtgcc tggttcctgg gggccacaag
      901 aaagttctgc aggctatgct gcactatcag aagtatgcca gcgagagaac ccgcttccag
      961 acgttaatca acgacttgga taaaagcact gggcgctatc gggatgaagt gagtctcaag
     1021 actgccatca tgtcgttcat caatgcagtg ctgagccagg gagccggagt ggagagtttg
     1081 gacttcagac tccatcttcg ctacgaattt ctgatgctag gaattcagcc tgttatagat
     1141 aaattaaggg aacatgagaa ttcaacacta gacaggcact tagacttttt tgaaatgctc
     1201 cgaaatgaag atgaactaga atttgccaaa agatttgaac tggttcacat agacacaaaa
     1261 agcgccactc agatgtttga gctgaccagg aggaggctca cccacagcga agcctacccc
     1321 cacttcatgt ccattctgca ccattgcctg cagatgcctt acaagaggag tggtaacaca
     1381 gtccagtact ggctgctgct agacagaatc atacagcaga tagttatcca gaatgacaaa
     1441 ggacaagacc ccgactccac acctctggaa aactttaata ttaagaacgt cgtaagaatg
     1501 ctggttaatg aaaacgaagt taagcaatgg aaagagcaag cagagaagat gaggaaagag
     1561 cacaatgagc tacaacagaa gctggagaag aaagagagag aatgtgatgc caagacccaa
     1621 gagaaggaag aaatgatgca gaccttaaac aagatgaagg agaagctgga gaaggagacc
     1681 actgagcaca agcaggttaa gcagcaggtg gcagacctca cggcgcagct ccacgagctc
     1741 aacaggaggg ccgtctgtgc ctcagtccca ggaggaccct caccaggagc cccaggagga
     1801 ccctttcctc cctctgggtt gggctctctt ctccctcccc caccaccccc tctcctttca
     1861 ggtggagcac ttcctcctcc accacctccc ctccctcctg ggggtcctcc tcctccccca
     1921 gggcctcctc ccttaggagg aatcctgcca cctcctggtg ctccagtgag tctgacactc
     1981 aagaagaaaa atattcccca gcccaccaat gccctgaaat ccttcaactg gtccaagttg
     2041 cctgagaaca aattggaagg aacagtatgg actgaaatcg atgatacaaa agtcttcaaa
     2101 attctagacc ttgaagacct agaaagaaca ttctctgcct accaaagaca gcaggagttc
     2161 tttgtgaaca ataactccaa gcagaaagaa gcagatgcca ttgatgacgc actgagttcc
     2221 aaacttaaag tcaaagagct gtcagtgatt gatggtcgga gagctcagaa ttgcaacatc
     2281 cttctgtcga ggttgaagtt atccaatgac gaaatcaagc gagcaattct aacaatggat
     2341 gaacaggagg acctgcccaa ggacatgtta gaacagcttt tgaaattcgt gcctgagaaa
     2401 agcgacattg acctgctaga agaacataaa catgagttgg accggatggc caaggctgat
     2461 cgcttcctgt ttgagatgag cagaattaat cattaccagc aacgactgca atcactgtac
     2521 ttcaaaaaga agtttgcaga gcgtgtggcc gaagtgaagc ccaaagtaga agcgatccgc
     2581 tccagctcag aggaggtact caggagcagt gccctcaagc agctcctgga ggtggttctg
     2641 gcttttggaa attatatgaa taaaggacaa agaggcaatg catatggatt caagatctcc
     2701 agcctcaaca agattgcaga tacaaaatcc agtattgaca agaacattac cctcttgcac
     2761 tatctaataa ccattgtgga gaataagtac cccaaggtcc tgaatctcag cgaagagttg
     2821 cgggatattc ctcaagcagc gaaagtgaac atgactgagc tggacaaaga gatcagcacc
     2881 ttgaggagtg gcctgaaagc tgtggagacg gaacttgagt atcaaaagtc tcagcccccg
     2941 cagcctggag acaagtttgt gtctgttgtc agccagttta tcaccctggc gagcttcagc
     3001 ttctcagacg tagaagatct tctagcagaa gctaaagagc tgttcactaa agcagtgaag
     3061 cactttgggg aagaggctgg caaaatccag ccagatgagt tctttgggat ctttgatcag
     3121 tttcttcagg ctgtgacaga agcgaaacag gaaaatgaga acatgaggaa aaggaaggag
     3181 gaggaggagc ggagggctcg cctggaagct cagctcaaag agcagcggga gagggagcgg
     3241 aagatgagga aggccaagga gagcagtgaa gagagtggcg agtttgacga cctggtctcg
     3301 gctctgcgct caggagaggt gttcgacaaa gacctttcaa aactcaaacg gaaccggaaa
     3361 cgcatttcca accaggtgac ggacagcagc cgcgagcgac caatcacgaa acttaatttt
     3421 tagtttcctt gcatcttttt ctagaaagcg ccgtagcagc cctttggagt gactagaact
     3481 tttcattaca ctgcctttcg atccaaaaca gtggcgattt cttctctcat ctgtgagtga
     3541 aggtgtgaat gtgtgtgtaa atgtatgtgt atatatgtga aaatgtacat acaagtctta
     3601 agtgttgtcc ggggacctat gtgtatgctt aaaaagttca tgttaatgtg tgcacccaga
     3661 aactctttgt gtatgcattc atatttccct gaacaccatg cctgttcaga agcacaatac
     3721 tctctcctga aacagatgac agacattcct ttaaaggggg gtggggggag gaaagaagaa
     3781 gttaagagaa gcttgtcttg tgaagtattt tatggttccc acagttgatg tagtgaggcg
     3841 attttcactg gtggaaaagg aattggaaca gactgggctg agctcagcgc tcgtgggcga
     3901 ggcaccgcgc ccacatcagt gagtgactag cgagcggaac agctctgagg ttccgatgct
     3961 gctgttgggg tacacacttg cctggggtac aaacgtctgt tgagaacatc ttgcacacat
     4021 tcatatcatg tagggtgtca ttcacacttc gtttatacat ttaaaacttg aacaccaatt
     4081 tccccctaat ttcatcgatt tttctgccaa gtgctcttga tgacttcttc ctttggtttt
     4141 gtttttgttt ttttggaaac acactttcta aatgatgcct cctggatcct gggttagggc
     4201 cagaattgcc agagcctcct cactgaccta acaatacagt tctgtagacc tgacaaatga
     4261 aatttcccac cgagacttag tggaagaacc ctgaagagtg ttcttaaagg cataggggtg
     4321 ctttatgggg tgtcttctgt tttctgtata ggccgagctg catgtcctgg gataaagggc
     4381 attcatatgg acacgaaatg tcaacagtat ctacagggat gctcagatct atttatctca
     4441 aaaatatttg aagtgatcgc tgttacgtgt tgtcatttta aattgtgtgt cagtgacgct
     4501 acctgtacaa tttcagtcca aaaaataaag ctctcaggga gaaatgataa aaaaaaaaaa
     4561 aaacaaaaaa aaaaaaacaa tgagcagtag aaaataaaat atggacgctt accactggcc
     4621 tgccaactcc tagtatcctt aacttatgtg gtatgtaaag aggactgtta ctacttttct
     4681 tttgctttat ttatttgtac cagggtgtgg ggagggacta gcgttttctc tttgttctcc
     4741 ttctgtcctt ctgtggctgg gtttcctgtg gagagagtag ttttccctat tgcactacaa
     4801 tattatttac tcactaaact gaggttttca gtaaagtatc aactgtttat taagcactta
     4861 ctatgtaccg ggcatagtag agctatagtg gtagtaagca agacagagtc cctgcccacc
     4921 aatgaattct cactctaaat ggggttttca gggacggtag aataccagtg tgcatagtac
     4981 acaggaacca tactatttaa aaaataatct ctatggacta tattgtttag tgcagatggc
     5041 aagggatctg tgctgtgtga aagctgtgaa acagtgctct aagaattgtc aagagctgtg
     5101 gtttttacat tttttgtttt tcttcatcac atacttagca acttttctac ccattatgta
     5161 gaagcaaata gctcttcact aaggcagtca caggtgcaaa gcagagctga ctctcccagc
     5221 cccgagctaa ccccagtctg caagcatcct ggcagtggtg ccgatgcaga cctggctcgg
     5281 gccagcctgg ggaggaggag cggggtggag tgatggattt cactgttcct gatctaaagt
     5341 gcctctttgt atattctttt ctattgatag caggaaaagt ttggtccagc tcagttttgg
     5401 aactgtggaa agagactcac accagagagc aagtctgtgt cgcatgtccc cttgcctttc
     5461 ttagaatcct cctcacttcc atgtagccct cctggtaggc cacctttgcc cttcccagct
     5521 tccggtttat tttcctaaag actgtgcagg taacttcatg tgccattgtt acaaaaaaaa
     5581 aaaaatggac tttttagact ggtgctggtg taagtagtca cttttctctc ttgagtatgt
     5641 attttaaaga tttttttaaa taatgccaaa aaaagaaaag cattataatt tctaaactta
     5701 atcaatgtct cgtatcttac tagcttagta gttggaccca tttagtcttt agatgcaaga
     5761 ctgttgttac agaaccaagg gaaaaaaagg tgtcgtgtgt gctatgagac tgtacatttt
     5821 tttaaatagc aatatgcaat aaagatgact tcactgggtt ta
//
