LOCUS       NM_001013980            5367 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Rattus norvegicus cysteine and tyrosine rich 1 (Cyyr1), mRNA.
ACCESSION   NM_001013980 XM_221702
VERSION     NM_001013980.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5367)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC087052.1.
            
            On Apr 20, 2005 this sequence version replaced XM_221702.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087052.1, CK475557.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676786, SAMN16676809
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5367
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q11"
     gene            1..5367
                     /gene="Cyyr1"
                     /note="cysteine and tyrosine rich 1"
                     /db_xref="GeneID:304138"
                     /db_xref="RGD:1359578"
     exon            1..360
                     /gene="Cyyr1"
                     /inference="alignment:Splign:2.1.0"
     CDS             288..785
                     /gene="Cyyr1"
                     /note="cysteine and tyrosine-rich protein 1;
                     cysteine/tyrosine-rich 1"
                     /codon_start=1
                     /product="cysteine and tyrosine-rich protein 1 precursor"
                     /protein_id="NP_001014002.1"
                     /db_xref="GeneID:304138"
                     /db_xref="RGD:1359578"
                     /translation="MDALRLPRRLGVLLWKVVLLFVYAEDCRAQCGKDCRAYCCNGST
                     PHCCSYYAYIGSILSGTAIAGIVFGIVFIMGVIAGIAICICMCMKNNRGTRVGVIRAA
                     HINAISYPMAPPPYTYDHETEYCTDLPPPYSPAPQASAQRSPPPPYPGNSRKYSSSQN
                     RICNN"
     exon            361..463
                     /gene="Cyyr1"
                     /inference="alignment:Splign:2.1.0"
     exon            464..618
                     /gene="Cyyr1"
                     /inference="alignment:Splign:2.1.0"
     exon            619..5308
                     /gene="Cyyr1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttttgcttg ccagagcaca gcacctttgg gcgggacata aagcccctgc cgcagctcac
       61 ccaggcaagg aacaccggag ctcagctgcc ccgcagccgg ctggattcgc cagggctggg
      121 gtcatggcca gggccgctct ggaccctgct ctcgggagca catccctgtt ctcctgaccg
      181 ccctgtatcc tccgcattgc tgctggagtt cccggctgtc ccttcacttc aatctcggcc
      241 aggtctaccg gtctgtctta cagagcagct tggggccacc ggcttggatg gatgcgctga
      301 ggctgccccg gcgtctaggg gtcttgcttt ggaaggtggt cctgctcttt gtttatgcag
      361 aggattgccg tgctcagtgt ggcaaagact gccgagccta ctgctgcaat ggaagcacac
      421 cgcactgctg ctcctactac gcctacattg ggagcatcct ctcgggcact gcgattgctg
      481 gcatcgtgtt tggaatcgtg ttcatcatgg gggtcattgc aggaattgcc atatgcatct
      541 gcatgtgcat gaaaaacaac cggggaaccc gcgtgggagt catcagagca gcacacatca
      601 atgccatctc ctatcccatg gcaccgcccc cctatactta tgaccatgag acggaatatt
      661 gcacagacct gccaccacca tactctccag cccctcaagc ttcagcccag cgctctccac
      721 cccctccgta tcctggaaat tcaaggaaat attcctcctc gcagaacaga atatgtaaca
      781 attagcaatt acccagaaca aaatgcctca atttagaaac gtgcaaaaaa taaaatgatt
      841 gtctactggc tagggtcaga taacatctca ggcagactat tcatgtggag caggctcttt
      901 ccctgctcag agctaggtag agaatgatgt gtggttctct aaagtcacag attacgtgat
      961 ctacagatcc acccaggcac agtcagatta aagcaatgca cttggcagac cacgtgataa
     1021 tcacgctgct ttaggacgag ctgaaggcaa cttcagcatt gaacctggaa tcaagacaaa
     1081 cagaggacag tcttatctac atcaggaaag agctgcattc cacatagctt taggagaact
     1141 agaacagttc attattacat ttatccacaa atatgtatta agtgccttag agcccactca
     1201 gtgcctggcc acgttagggg ctctggatag aagtaaccag tgggaacgtt ggttctggca
     1261 caggcatacc tcatcttgtt gcactttgac cttttgcact tcacagtggt gttgcatgtt
     1321 tttttacaga ttgaaggttt gtgataacct tgcaccaagc agtgtcattt tcccaacagt
     1381 agaagcatac ttcctatcct tgtattacat gttggtcatg tacgccaaca ttccaaatgt
     1441 tttcatagcc acgattatta tgtctgttat ggtgatctgt gtttagtgtt ggttggtgtt
     1501 gttatagtag atatttgttt ggagatgtca tgaattctgc ccctataaaa cagtgagatt
     1561 agtgtgataa atagtgagat aaatagtgtg tgtgtgtgtg tatgtatcat atttgctcca
     1621 ctgaaaacct tcaccccttc ctcctctctc tctctcctcc tattccgaga acagtctgaa
     1681 attaggccaa ttaacaagcc aacaatgact tctaagtgtt caagctaaaa gaataatatg
     1741 gttcttactt taacccaaag atggaaataa ttcatcttca tgacaaaagc atgttcaaat
     1801 ctgagatagg ctggaaggcc agcatcttac gctagcttgt aagttaagcc ataaaaacac
     1861 agatgaggct ttcttaaagg aaactaaaaa tgtctctctc caaacacaca aatgatagaa
     1921 aagaaagaga acaccagccc cactgcttat aagaataact cattagtggt gtatgcagca
     1981 gatcaaaaca accacattcc ctcaagtcat aaagcttgat ccagagctgg gacctaactc
     2041 ttcattctgc aatggctggc agaggcgaac aagaaatgta agcatagctt gcatgctgta
     2101 agagaaagat tgagaggagc agagatcagg tcctgaagtt aagagaagga gctaccctac
     2161 ccccgtattc aaaggagaag gtgaagcttc aggcactgca atggaggctg acgcctgttc
     2221 tctcaaagac ctagttagga tcacacagaa gatggctgct taatggaaat gacagtctct
     2281 actgttggaa gacgtgcttg ccttctagaa cttccacagc cagaacaaag aagccatcct
     2341 aactccaaac ctcaaaagac agtctggcct tcttgctagt gtctataaca taactgctga
     2401 ctttcacatg aagccagtgt tcaatgttca ttttctagcc aaaaatccta gccctcttaa
     2461 gaatagccat agttcgctct gcctgtagtc tatacataga acaaccaggt ctttttttga
     2521 tgttgtttaa tgaatgtttt aaaccaagtg ttgagactgc tcagggaaaa acaagttgtt
     2581 gctttttttc aaaaccttac tgcttattga caaagctcat ccaagtgctc caatggaaat
     2641 gtacaaagaa acaaagatct gttcatatgc agcaacgatt ccagtcctac tctgtgtccc
     2701 atagactatg gttaacttca acttctaagc cttggtattt aataactgcc ttttataagg
     2761 tcataactga cacaaattgg aacctctggg ggcttggcaa agtcctggaa agaatctgtg
     2821 actgtagacc catgattcac aagaagagat cgagaggtca gtattaatgc acatttggag
     2881 gaagtagatt ccggccctca tacataatgt tgcctttgct aaggctttgg aggagaaagt
     2941 acctacagat atggtaaact cacaaaggaa ctaaccttgg agatggaaat tgaaggtgca
     3001 actcagatac tatgtctcag gctatcactg caagaggaac aattgcttct tacggtgagc
     3061 aatggaggtt ttggttcttc tggtgaaaca cactgctggg gaaaggtgct gtgggcagag
     3121 atgaggtcat agcagagggt ttagagtatt tgtaagtgac ttgaaaagcc tgcagtggga
     3181 ttggagaaaa ttacaatttt gaaggaagaa acaccgtgct ttaaaagctg ccaagcagca
     3241 tcacatgcta cagagaaccc gtttgtgaag agatgtttca acccatgtag cagatttcac
     3301 tgttatatta tttgaaggaa ctaaccggat taagcaagca ccagcctaat catcagcaac
     3361 tctcacccca ccaccaccaa aaagatttgg acctgccgaa agcttggctg ctagttgcca
     3421 ttctttaaca atgaaatatt ttaatgaggg tgtagacact gctttgaaga cacttaacaa
     3481 actataatac agtataaaca taactttaat gtgtaccaga aaaccaaaaa gtattcgtgt
     3541 gattctctag tgaaatttgc tttgcaagaa agacaagcgg cttcacaggt gatgttgaag
     3601 tcttattagt atgagtatat gaaacccatg ccctctctaa agtatgtgtg taaaacaaag
     3661 caaattaagc aaacaacaac aaaaaaccag tcgcagcctt actgttgact agatagcttt
     3721 gtgaagctct tccatcgaga tcccaaacaa aatgcagctg tatagtaaag aaatgttcta
     3781 gaaaggtgtc taaaatgaat cgatcctttt agcctcaaac tgtctgctta tgtcttaggt
     3841 gggtgtgact acctgtgtct gcagcagtga cagcagtaac tcaatcttac ccattgactc
     3901 tgactattta aacaagatca aaggtaccca ccaggttctg ggcgctaaga tctccacagt
     3961 ccttactaac tcttcctaaa aacccatatc gctttagtca caggtatatg aaggttgctc
     4021 caattgtgga ataagaggtg agaaaccaaa tagttccagg gttttatatc agtaataaaa
     4081 tgtgtaattt gaccatagac aaaagacttt ttttaaaggg ggaaatgaat gctcaagcca
     4141 ttgcttccat tttataaaaa ctaatctttt agaaaagtta aataattaat gggaaaggca
     4201 agaggacact gtgttgcctt ttgcccgagt actaggtttt gtgacgtgct tgcctttaaa
     4261 tatgaaagca ttcaataaaa aattccaatg cgtcatgttc tactccaagt gaccctaaca
     4321 ttcatttttt ccacttggct ctttttgtgt actttaaaat tgtttgatga tcactaggga
     4381 tagaaggtca gacctttatg tcactttaaa agaaaaccta aaacactaac caaacttaaa
     4441 caatctggta taatgattat aattcaatga tattccaaaa tggcaccaag atacttgata
     4501 aataaccaaa acaaatatct gacaatatag gctatgggat ctgagcttat agttgagaaa
     4561 gttaatatga ataaatagtg ccttttactg tatcaaatat ctgcagtaga aatatgtggg
     4621 tctgactgaa catggtctac agaagttatt gaggctaggt ttgttttgag tgatttgctt
     4681 ggcttaggca agaataatct tagcttcgaa gatgtgaaaa gccttcaggg gtcctgtctg
     4741 ttctagtaag aggcttcctg cctagcatga agtgtcggca tagtgttagc agtacatggg
     4801 ctttgattta tttttcttcg gcaaatgtga ttagtttata ccactctaca gcaataatcc
     4861 tcaatgccaa agtcacagtg atctgagaaa gttgtttgca aatccactac acatttctaa
     4921 agaaaaataa agaggcaagt ctgccaaaat tgaatgctca ttttgacacg aatgtacatc
     4981 taccacatgc ctctgacatt ctataaacat tgtctgcatg ggaactgtcc acactatctc
     5041 tctttgagtt ggttatgact cgcctgaagg catagcacaa acctatatat ttacaatgaa
     5101 gaattttact ggtttttact agtgtcatac tatcatacat gaatatatca tggatttcta
     5161 aagttcactg attatttcca gaagtaatgt atatcagagg aaaacaatat ttgatgtaaa
     5221 tttttgatta tggttgttta agaactaacc tttgctatgg ctaaattatt tacaaagagc
     5281 aataaaatga aagaacttgc tataatgaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     5341 aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
