LOCUS       NM_001106718            1380 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus CYFIP related Rac1 interactor A (Cyria), mRNA.
ACCESSION   NM_001106718 XM_001073211 XM_216666
VERSION     NM_001106718.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1380)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC158700.1.
            
            On Jan 27, 2008 this sequence version replaced NM_001106718.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158700.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1380
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q15"
     gene            1..1380
                     /gene="Cyria"
                     /gene_synonym="Fam49a; RGD1305961"
                     /note="CYFIP related Rac1 interactor A"
                     /db_xref="GeneID:298890"
                     /db_xref="RGD:1305961"
     exon            1..39
                     /gene="Cyria"
                     /gene_synonym="Fam49a; RGD1305961"
                     /inference="alignment:Splign:2.1.0"
     exon            40..181
                     /gene="Cyria"
                     /gene_synonym="Fam49a; RGD1305961"
                     /inference="alignment:Splign:2.1.0"
     exon            182..261
                     /gene="Cyria"
                     /gene_synonym="Fam49a; RGD1305961"
                     /inference="alignment:Splign:2.1.0"
     CDS             192..1163
                     /gene="Cyria"
                     /gene_synonym="Fam49a; RGD1305961"
                     /note="protein FAM49A; family with sequence similarity 49,
                     member A"
                     /codon_start=1
                     /product="CYFIP-related Rac1 interactor A"
                     /protein_id="NP_001100188.1"
                     /db_xref="GeneID:298890"
                     /db_xref="RGD:1305961"
                     /translation="MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQD
                     SESILSDLQAYKGAGPEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKA
                     LQSLLESLTCPPYTPTQHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRR
                     TISRNRINNMHLDIENEVNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIEN
                     TTDCLSTMTSVCKVMLETPEYRSRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTS
                     KIDMKGCIKVLKEQAPDSVEGLLNALRFTTKHLNDESTSKQIRAMLQ"
     exon            262..383
                     /gene="Cyria"
                     /gene_synonym="Fam49a; RGD1305961"
                     /inference="alignment:Splign:2.1.0"
     exon            384..489
                     /gene="Cyria"
                     /gene_synonym="Fam49a; RGD1305961"
                     /inference="alignment:Splign:2.1.0"
     exon            490..626
                     /gene="Cyria"
                     /gene_synonym="Fam49a; RGD1305961"
                     /inference="alignment:Splign:2.1.0"
     exon            627..704
                     /gene="Cyria"
                     /gene_synonym="Fam49a; RGD1305961"
                     /inference="alignment:Splign:2.1.0"
     exon            705..821
                     /gene="Cyria"
                     /gene_synonym="Fam49a; RGD1305961"
                     /inference="alignment:Splign:2.1.0"
     exon            822..901
                     /gene="Cyria"
                     /gene_synonym="Fam49a; RGD1305961"
                     /inference="alignment:Splign:2.1.0"
     exon            902..1028
                     /gene="Cyria"
                     /gene_synonym="Fam49a; RGD1305961"
                     /inference="alignment:Splign:2.1.0"
     exon            1029..1099
                     /gene="Cyria"
                     /gene_synonym="Fam49a; RGD1305961"
                     /inference="alignment:Splign:2.1.0"
     exon            1100..1356
                     /gene="Cyria"
                     /gene_synonym="Fam49a; RGD1305961"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgagcagga gcgaggcggc gacagcggct gcgactctgt accactccca taagcacaga
       61 gaccagaccc gccgggacca gacttgattt ggagagctcc ttcctgtggc ctcatagctg
      121 ctctgctggt ttgccccttc agtctggatt ggtgacacgc aaccactgga gatatttcca
      181 ggtttgctgg catgggaaac ttgctcaaag tcctgacccg ggaaattgag aattatccac
      241 acttcttcct ggattttgaa aatgcccagc ctacggaagg agagcgagaa atatggaacc
      301 agatcagtgc tgtcctccaa gattccgaga gcatcctctc agacctgcag gcttacaaag
      361 gcgcaggacc ggagattcga gatgcaattc aaaatcccaa tgacattcaa cttcaggaaa
      421 aggcttggaa tgcagtctgt cctctggtcg tgaggctgaa gaggttttac gaattttcta
      481 ttcgtcttga gaaagcacta cagagtttat tggaatctct gacgtgtcca ccctatacac
      541 caacccagca cctcgaacgg gagcaagccc tggcaaagga atttgcagaa atcttacatt
      601 ttacccttcg attcgatgag ctgaagatga ggaacccagc tattcagaat gacttcagtt
      661 actacagaag aacaataagt cgtaaccgca tcaacaacat gcacctagac attgagaatg
      721 aagttaataa tgagatggcc aatcgaatgt ccctcttcta tgcagaagcc acgcccatgc
      781 tgaagactct tagcaacgcc acaatgcact ttgtctcaga aaataaaacc ctgcccatag
      841 agaataccac agactgcctc agtacgatga caagtgtctg taaagtcatg ctggagacac
      901 cggagtacag gagcaggttt acaagtgagg agacactgat gttctgcatg agggtgatgg
      961 tgggggtcat catcctctat gaccatgtgc accccgtggg agctttctgc aagacatcta
     1021 agattgatat gaaaggctgc ataaaggtgc tgaaggaaca ggcgccagac agtgtggaag
     1081 ggctgctgaa tgctctcagg ttcactacaa agcacttgaa tgatgaatcg acttccaaac
     1141 agattcgagc gatgcttcag tagaaccctg ctcagagagg aggatctgtg ctgacctcag
     1201 atgtatatgt ttacataatt taatacagat tgatgttaat acttgtgtat ttacataacc
     1261 atttccttct tgtcactgaa atatatggac cttaatttgt atcctgactg attcaaccca
     1321 gcagagcata acttgacttg agagccttac ctttgaaaaa aaaaaaaaaa aaaaaaaaaa
//
