LOCUS       XM_008769030             779 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cytochrome P450, family 3, subfamily
            a, polypeptide 71, pseudogene (Cyp3a71-ps), mRNA.
ACCESSION   XM_008769030
VERSION     XM_008769030.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_008769030.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..779
                     /gene="Cyp3a71-ps"
                     /note="cytochrome P450, family 3, subfamily a, polypeptide
                     71, pseudogene; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 Proteins, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:690383"
                     /db_xref="RGD:1597309"
     CDS             228..779
                     /gene="Cyp3a71-ps"
                     /codon_start=1
                     /product="cytochrome P450 3A1-like"
                     /protein_id="XP_008767252.2"
                     /db_xref="GeneID:690383"
                     /db_xref="RGD:1597309"
                     /translation="MFTSGKLKVMFPIIKLYGDILVKYLRQEAEKGKPVSVKDIFGAY
                     SMDVITSTSFGVNVDSLNNPKDPFVEKTKKFLRLDYFDPLFISVELFPFLKPIYDMLN
                     ISVFPKDSIAFFKNFVYSMKESHLDSKQKYQVDFFQLMMNAHNNSSESHKGKQGNPSQ
                     SVDKAALEEWVGCSGNVYTGFSR"
ORIGIN      
        1 cctgaccctt gaacctagtt ttctaacaac agacatattt acatttcaaa ggatcctgga
       61 atataaagtt ggaaccacaa taggcagctg agtatgtacc tgatttctca taagcagttt
      121 tttttttttt ttgattctag gatcttggcc caatggggat catgaacaaa tccattgctt
      181 tctgaaagga tgaggagtgg aagagatata gagccttgct gtcccccatg ttcaccagtg
      241 gaaaactcaa ggtgatgttc cccatcatca aactgtatgg agacattttg gtaaagtact
      301 tgaggcaaga ggcagagaaa ggcaagcctg tctctgtgaa agatattttt ggtgcctaca
      361 gcatggatgt gatcaccagc acatcatttg gcgtgaatgt tgattccctg aacaacccaa
      421 aggatccttt tgtggagaaa accaagaaat ttttaagatt agattatttt gatccattgt
      481 tcatatcagt agaactgttt ccattcctca agccaatata tgatatgtta aatatctccg
      541 tgttcccaaa ggattcaata gcatttttca aaaactttgt gtacagtatg aaggaatccc
      601 acctggattc taagcagaag taccaagtgg atttttttca gctgatgatg aatgctcaca
      661 ataattcctc tgagtctcat aaaggtaagc aaggaaaccc ttcccagtct gtggacaagg
      721 cagctctaga ggagtgggtg ggctgttcag gaaatgtata cacaggcttt tctaggtag
//
