LOCUS       XM_008763719            2965 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cylicin 2 (Cylc2), mRNA.
ACCESSION   XM_008763719
VERSION     XM_008763719.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 11, 2024 this sequence was replaced by
            NM_001427183.1.
            
            On Jan 21, 2021 this sequence version replaced XM_008763719.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2965
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2965
                     /gene="Cylc2"
                     /note="cylicin 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:500458"
                     /db_xref="RGD:1562799"
     CDS             52..2010
                     /gene="Cylc2"
                     /codon_start=1
                     /product="cylicin-2"
                     /protein_id="XP_008761941.1"
                     /db_xref="GeneID:500458"
                     /db_xref="RGD:1562799"
                     /translation="MSIPRFLKVTYGAYDNYIPVSELSKKSWNQQYFSLAFPKPPRPG
                     KKRRSLPSQLQNNPAPVIDEQKLGIHKPPLWMHRSLMRISERPSVYLAARKSLPPKPP
                     RFGKGEFKRAGTTKTLASEKSKKEVKLKKDECEAKEKKALKTEKEENLKPVDTKISKD
                     SQKDKGKISSGSEGEKAGVKKDVTTSKKGTKGTDSASETGSDKPGVKKDIKTSKKGTK
                     GTDSASESGNEKASGKKEAKTSKKGPKAKDSASETGSEKAGGKKEAKSSKKGLKAKES
                     ASDSGSEKAGGKKEAKSSKKGLKAKESASDSGSEKAGGKKGVKGSKKGLKAKESASDS
                     GSEKAGGKKGVKGSKKGSKAKDSASETGSEKAGGKKDAKASKKVSKDKSSASESGGEK
                     AGGKKEAKASKKVSKDKSSASESGGEKAGGKKEAKASKKVSKDKASPSESEVAKAGGK
                     KEAKASKKVSKDKVSASESGGEKAGGKKEAKASKKVSKDKVSASESDGEKSGGKKEAR
                     ASKKGSKDKASASESGGEKAGGKKEAKADKKSPKQSKETLVSKAVDKDVGKKEEKSVK
                     QGSKGKDVVADSASEKGDAGKEAKKKEEKEKKKKGEGDAKEGSKKEKKDKKDKKDKKD
                     KKDKKDKKDKKDKKEKKDKKEKKEKKAK"
ORIGIN      
        1 catttttcca catcaccaaa cttaggccct ggcacgtcac aggtggaaga aatgtctata
       61 ccaagattcc taaaagtaac atatggagca tacgataatt atattccagt cagtgaatta
      121 agcaaaaaat catggaatca gcaatacttt tccctggcat ttcccaaacc accaaggcca
      181 ggaaagaaac ggagatcact accttcccag ttacagaaca atccagctcc tgtaattgat
      241 gaacaaaaat taggaattca caaaccacca ttatggatgc accgttccct gatgagaata
      301 tctgagagac catcagttta tttggctgcc aggaagagcc ttccaccaaa accacctcgt
      361 tttggcaagg gagagtttaa aagagcgggc acaaccaaga ctttggcttc agaaaaatca
      421 aagaaagaag tgaaactgaa aaaagatgaa tgtgaagcaa aagagaagaa agctctaaag
      481 acagagaagg aagaaaatct caaaccagtt gatacaaaaa tttcaaagga ttcacagaag
      541 gacaagggaa aaatatcttc aggctctgaa ggtgaaaagg ctggtgtgaa gaaagatgtc
      601 acgaccagta aaaaaggcac aaagggtact gattcagcct cagaaaccgg aagtgacaag
      661 cctggtgtga agaaagacat caagaccagt aaaaaaggca caaagggtac tgattcagcc
      721 tcagaatctg gaaatgaaaa ggctagtggg aagaaggaag ccaagaccag taaaaaaggc
      781 ccaaaggcta aagattcagc ctcagaaaca ggaagtgaaa aggctggtgg aaaaaaggaa
      841 gccaagagca gtaagaaagg cttaaaggct aaagagtcag cctcagacag cggaagtgaa
      901 aaggctggtg ggaagaagga agccaagagc agtaagaaag gcttaaaggc taaagagtca
      961 gcctcagaca gcggaagtga aaaggctggt gggaagaagg gagtcaaggg cagtaagaaa
     1021 ggcttaaagg ctaaagagtc agcctcagac agcggaagtg aaaaggctgg tgggaagaag
     1081 ggagtcaagg gcagtaagaa aggctcaaag gctaaagatt cagcctcaga aaccggaagt
     1141 gagaaggctg gtgggaagaa ggacgccaag gcaagtaaaa aggtctcaaa ggataaatct
     1201 tcagcctcag aatctggagg tgaaaaggct ggtggcaaga aggaagccaa ggcaagtaaa
     1261 aaggtctcaa aggataaatc ttcagcctca gaatctggag gtgaaaaggc tggtggcaag
     1321 aaggaagcca aggcaagtaa aaaggtctca aaggacaaag cttctccctc agaatctgaa
     1381 gttgcaaagg ctggagggaa gaaggaagcc aaggcaagta agaaggtctc aaaggacaaa
     1441 gtttctgcct cagaatctgg aggtgaaaag gctggaggga agaaggaagc caaggcaagt
     1501 aagaaggtct caaaggacaa agtttctgcc tcagaatctg acggtgaaaa gtctggtggg
     1561 aagaaggaag ccagggcaag taaaaagggc tcaaaggaca aagcttctgc ctcagaatct
     1621 ggaggtgaaa aggctggtgg gaagaaggaa gccaaagcag ataaaaaaag cccaaagcag
     1681 tcaaaagaaa cacttgtaag taaagcagtt gacaaagatg ttggaaagaa agaagaaaag
     1741 tcagttaaac agggttcaaa aggcaaagat gtggttgcag attctgcaag tgaaaaggga
     1801 gatgcaggga aagaggccaa gaagaaggaa gagaaagaga aaaagaaaaa gggagaggga
     1861 gatgcaaaag agggtagtaa gaaagagaag aaagacaaga aggacaagaa ggacaagaag
     1921 gacaaaaagg acaagaagga caagaaggac aagaaagaca agaaagaaaa gaaagacaag
     1981 aaagaaaaga aagaaaagaa ggcaaagtaa gtcttggttc agaaagcaaa ccgaaggtaa
     2041 gaactccaaa gcatagtcag tgaacccatt ttgatagtct taacattcat cgtgagataa
     2101 aagaagtatg caaagattaa tcaaaccatt tattaaagag aaggaaaatt acacggtgaa
     2161 atgaaagtat actcatggaa ttaaaaagag gactaagaac gttcatagga ttcactgaac
     2221 catgtggaag atacccattt taaatgtgta gctatggagg tattaaagta aaatcactag
     2281 ggagattcaa agaatatata aataagaatg cagaaaataa caattggaaa acaaacaaca
     2341 acaaaaaaaa ccctacaata ttccataagg attttgtttt aaaggcttac aagaaggctt
     2401 ggtgctgtgt ctagctttaa tgatgtgcag ctgagcttgt acacctatga agcacaatag
     2461 ccaagaaaag ccaaacaacg cttagacaac agaacttgaa ctgaataaat atcaaaaaat
     2521 ggcttcacaa ggaaaacaag tagaagagca ggaagagagg gaggggatga agagaaagat
     2581 ggaaggaaag acaagagagc aaagatcacc gtccatacga aaaaggagga aggacacctt
     2641 gagtttgttt acaggaccat ctgagtttca agtgcccaca atgacccacc tgtcatccct
     2701 gatgaacatt tttggcatct tcaattcaaa atggccacaa cagaacactt gatatgacca
     2761 ccaacgattg tttcacaaat ctcaattccg gaatctaagt cagggcctca tctaaaggtg
     2821 aatgtgaaaa gaaaagaaga tgatgaaatc aaagagacaa catcagctct ggaaatgaga
     2881 agcaaaaaaa cccccaacaa acaaaaacaa aaagaaaaaa acaacagaaa tttatgaagg
     2941 tcatttaaga agtacagcag aaccc
//
