LOCUS       XM_006229306            2107 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cylicin 1 (Cylc1), transcript variant
            X1, mRNA.
ACCESSION   XM_006229306
VERSION     XM_006229306.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 31, 2024 this sequence was replaced by
            NM_001427602.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006229306.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2107
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2107
                     /gene="Cylc1"
                     /note="cylicin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100359483"
                     /db_xref="RGD:2323810"
     CDS             67..1989
                     /gene="Cylc1"
                     /codon_start=1
                     /product="cylicin-1 isoform X1"
                     /protein_id="XP_006229368.1"
                     /db_xref="GeneID:100359483"
                     /db_xref="RGD:2323810"
                     /translation="MSLSKLDGEKLTIEDVETSSSSCRKEINTATHDDYMLIRQTREK
                     WNQEDFALTFPKTPMPDMKKRSGPSELEVAVPRQEKRKIEEGQKPTHVLIDQFLREVF
                     LKSSFSLAFTIQAPFKYLDNPQNHYIMAETRKPKDDKKRKTLKTKFREKISSCVINLE
                     SMKTITNGKPEILGNTEKNPSKSSHKSKLPKKSNSTSETNLESSNSKESLEMGLRNDN
                     KKSMNFIRKAINNAATCCKDNPNTDSKNSIDKYSDEISECIHSSNMDLMLHLNEFRAE
                     STDFDEWLTNCSQNNAKKPSKKSGKKEKDSDIDSGDLKDAKKEGKKKSKKKKDSESTD
                     AESVDSKSGKKKAKTNKKRESKKKKDTESTGGESGGSKASKKDKEKKSVGKRDIASSG
                     SGSVDSKGVKKVKRQSKKDGTKTALSTDSESDTASKRGKKDEKKENKGRRKPIKDTVS
                     TDADSESEGDSTGKKSEKKDKKITKKGEKKDAKKNAVSTESDSDFAIKKGKKDKVKDK
                     GSYSDSASDTSSKGGRRKISRLSDTESEDSSEFRVIKSTDDSDVSSTDSKRGMTGTRK
                     GFRTLSKKTTFDDKGKRFASGRIPPSRERLPFPPCEPFKTPPKSRRVCQCKKPPPPPK
                     PKYAPLPGVEWIHKLL"
ORIGIN      
        1 catgactcaa cattattagt ttgagcatac aaatgctgaa gtcctggcag aagataggca
       61 aaggaaatgt ctctttcaaa actggatggt gaaaaattga ctattgaaga tgttgaaact
      121 tcaagttctt cctgtcggaa agaaataaat actgcaacac atgacgatta catgttaatc
      181 cgtcaaacta gggaaaaatg gaatcaagaa gactttgctt tgacatttcc caaaacacct
      241 atgccagata tgaagaagag atccggacct tcagaattag aagttgcagt tcctagacaa
      301 gagaaaagga aaattgagga aggtcaaaaa ccaactcatg tgttgataga ccagttttta
      361 agagaagttt tcttaaagtc atccttttct ctagctttta ctatacaggc tccattcaaa
      421 tatcttgata atcctcaaaa ccattatata atggcagaga ctagaaagcc caaagatgat
      481 aaaaaaagaa aaactttgaa gacaaaattc agggaaaaaa taagctcatg tgtaataaat
      541 ctggagtcca tgaaaacaat aaccaatggg aaacctgaaa tactaggtaa tacagaaaaa
      601 aatccatcaa aatcatcaca taaaagtaaa ttgcctaaga agtcaaattc tacatcagaa
      661 acaaatctag aatccagcaa ttctaaggaa tccttggaaa tgggtttgag aaatgacaac
      721 aaaaaatcaa tgaatttcat taggaaagca atcaataatg cagccacatg ttgcaaggac
      781 aatcctaata cagactctaa gaatagcatt gataaatatt ctgatgagat atcagagtgt
      841 atacacagct caaatatgga tttaatgttg catctaaatg agttcagagc tgaatccaca
      901 gattttgatg aatggttgac aaattgctca cagaacaatg caaagaagcc ttccaagaag
      961 agtggaaaaa aggaaaagga ctcagatatt gattctggag acttaaagga tgcaaagaaa
     1021 gaaggaaaga aaaaatccaa gaaaaagaag gattcagaat ctaccgatgc tgaatctgtt
     1081 gactccaaga gtggaaagaa aaaagcaaaa accaataaga aaagggaatc caagaaaaag
     1141 aaggatacag aatctactgg tggtgaatct gggggatcca aggcttcaaa gaaagataaa
     1201 gaaaagaaga gtgtaggcaa aagggatata gcatcttctg gtagtggatc tgtagattca
     1261 aagggggtaa agaaagtaaa aagacaatca aagaaagatg gcacgaagac tgcattgtct
     1321 actgattctg aatcagatac agcatcaaag aggggcaaga aagatgaaaa gaaggaaaat
     1381 aaagggagga ggaagcctat taaggataca gtgtctactg atgctgattc tgaatctgag
     1441 ggtgattcaa caggtaaaaa gagtgaaaag aaggataaga aaattacaaa gaaaggagaa
     1501 aagaaggatg caaagaagaa tgcagtgtct actgaaagtg attctgattt tgcaataaag
     1561 aagggaaaga aagataaagt aaaggacaag gggagttaca gtgattcagc atctgataca
     1621 tcttccaagg gaggcagaag aaaaatttca agactctcag atactgaatc tgaagactca
     1681 tcagagttta gagttataaa gtctactgat gattcagatg tctcatctac agactcaaag
     1741 aggggaatga caggaacaag gaaaggattc agaacattat ctaaaaagac aactttcgat
     1801 gacaagggga aaagatttgc gagtggtaga atccctccat caagagaaag actacccttc
     1861 cctccgtgtg agccttttaa aacaccacct aagtccagac gtgtctgtca gtgcaagaaa
     1921 ccacctccac ctccaaaacc aaaatatgct cctttgcctg gagtggagtg gattcataag
     1981 ctgctttgaa gaatgctgag tcctagattt cacagaatgg ccttagggaa gcaaactact
     2041 ttcaaactag ctgctctgct tctgtggaac tataataaag accagcatcc aaatatcaaa
     2101 agctgtg
//
