LOCUS       XM_039100422            1940 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to human chromosome X open
            reading frame 49 (Cxhxorf49), transcript variant X1, mRNA.
ACCESSION   XM_039100422
VERSION     XM_039100422.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100422.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1940
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1940
                     /gene="Cxhxorf49"
                     /note="similar to human chromosome X open reading frame
                     49; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     4 samples with support for all annotated introns"
                     /db_xref="GeneID:100361265"
                     /db_xref="RGD:2320498"
     CDS             134..1756
                     /gene="Cxhxorf49"
                     /codon_start=1
                     /product="uncharacterized protein CXorf49 homolog"
                     /protein_id="XP_038956350.1"
                     /db_xref="GeneID:100361265"
                     /db_xref="RGD:2320498"
                     /translation="MSSPDEASFRGTNLGPESGEPSERRRFPQGFARGHGLGPEERLL
                     RSREDKMCLPVSKTFPYDSWLDREEMEGRSVIWGCEGRPGTPVDDRGDSLDFVQHLAV
                     EGTSFGQHLANREAWGVHRHPSPQTCAAEPFSIWGDSDASMIRRGTRPLTSTEGKQFT
                     ASQLHPRALGRGRAWMTPRRSATSRMITSDDAQYPSSDPESSDEFSEIQMMRVTICLK
                     EGNQPKSTGLTELEDPARHTNVHGRENFVHVPSTLLATTPRGLSSAIEKQASGELESS
                     LSKKKQSMVWGKEGSRPSHQGATAAAAATISASATASTAAPAPVAVASGGFPKTSPRK
                     KPPSEKPSQWDASRGPVGRTFPPWGQRLKSAPVEPATFPPISGVALLGKASKCSLPSG
                     PKECKPFCTGKKFMVKKSRETQAGPKEDNNSPRDPGLQAQVPPHRAEQPSVCMYRGEM
                     SSGDCNTRASQVPGNLQFLSLSQRCPRPRAPAPAGDQEIPLRLPFPVGDRQYPVQGVG
                     GCQQCLMFQKEIDELKEQLAVMQALNEKLQDL"
ORIGIN      
        1 tcgcgatatt tgacggaagt gtatggcacc tgcagcagcc gcggcagtgg cggtttcctt
       61 cgccgaggcg tagctgggaa tgcagtgaag gcggtgacgg ttttccctca gactgttcct
      121 gcagggcaga aacatgagct ctcctgatga ggcgtctttt cggggtacca acttggggcc
      181 agaaagtggg gagccctcag aaagacgccg gtttccccag ggattcgcaa ggggacatgg
      241 cctaggacct gaggagaggc tgttacgaag cagagaagac aaaatgtgtc tcccggtttc
      301 caagactttc ccgtatgact cctggttaga cagggaggag atggagggaa ggtcagtcat
      361 ttggggctgc gaaggtcggc ctggcactcc ggttgatgac aggggggaca gtttggactt
      421 tgtacagcat ctagctgtag aaggtacaag cttcgggcag catttagcca accgggaggc
      481 ctggggtgtc cacagacatc cgtctccaca aacctgtgct gccgagccct ttagcatttg
      541 gggagactca gatgctagca tgatcaggag agggacgcgg cctttgacct ctacggaagg
      601 gaagcagttc acagctagcc aactgcaccc cagagctctg gggcgaggca gggcttggat
      661 gaccccaaga agaagtgcca caagtaggat gataaccagt gatgatgctc aatatccatc
      721 ctccgaccct gagtcttctg atgagttcag tgagatacag atgatgaggg taaccatttg
      781 tctcaaagaa ggaaaccagc ccaagtccac tggcctcact gaactggaag atccagccag
      841 acacacgaat gtccatggta gggaaaattt tgtccatgtg ccttccactt tgctggctac
      901 tactccaaga ggactcagtt cagccataga aaagcaggct tcaggggagc tagaaagctc
      961 tttgtctaag aaaaagcaga gtatggtttg gggcaaagaa gggagcaggc ccagccacca
     1021 aggagctact gcagctgctg ctgccactat cagtgcctct gccactgcct ctactgccgc
     1081 ccctgcccct gttgctgttg cttccggtgg ctttcccaag accagtccta gaaagaagcc
     1141 accctcagaa aagccatctc agtgggatgc ctcaagagga ccggtgggga gaaccttccc
     1201 accatgggga cagagactca agtcagctcc tgtagaacca gccactttcc ccccaatctc
     1261 aggggttgcc ctgctaggga aggccagtaa atgctcactg ccttcaggac ccaaagagtg
     1321 taagcccttc tgcactggga agaaattcat ggtaaagaag tcaagggaga cacaggcagg
     1381 gcccaaagaa gataataact caccaagaga tcctggactg caggcccaag ttccaccaca
     1441 cagggcagag cagccttccg tgtgcatgta tcgtggagaa atgagcagtg gagactgcaa
     1501 caccagagca tctcaagttc caggaaacct gcagttcctg tccttgagcc agagatgtcc
     1561 cagacccaga gcacctgccc ctgctggtga ccaggaaata cctctacgcc taccattccc
     1621 agttggagac aggcagtacc cagtacaagg agtagggggc tgccaacagt gtctgatgtt
     1681 ccagaaggaa atagatgaac tcaaggaaca actagcggtc atgcaggccc tcaacgaaaa
     1741 gttacaggat ctctgaagtt ggacccagat tctctcccca cagaagaggc caaactactc
     1801 cacccaggga tgctgcttcc ttccagttct tctacagcag tggtttccag cttcctaatg
     1861 ctatggcctg ttcatacagt tccctgtgtc atgttaatcc ccaaccataa agttatttct
     1921 gttgccgctt cacaactgta
//
