LOCUS       NM_001102587            1790 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus C-X-C motif chemokine receptor 6 (Cxcr6), mRNA.
ACCESSION   NM_001102587
VERSION     NM_001102587.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1790)
  AUTHORS   Rabquer,B.J., Tsou,P.S., Hou,Y., Thirunavukkarasu,E., Haines,G.K.
            3rd, Impens,A.J., Phillips,K., Kahaleh,B., Seibold,J.R. and
            Koch,A.E.
  TITLE     Dysregulated expression of MIG/CXCL9, IP-10/CXCL10 and CXCL16 and
            their receptors in systemic sclerosis
  JOURNAL   Arthritis Res Ther 13 (1), R18 (2011)
   PUBMED   21303517
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1790)
  AUTHORS   Latta,M., Mohan,K. and Issekutz,T.B.
  TITLE     CXCR6 is expressed on T cells in both T helper type 1 (Th1)
            inflammation and allergen-induced Th2 lung inflammation but is only
            a weak mediator of chemotaxis
  JOURNAL   Immunology 121 (4), 555-564 (2007)
   PUBMED   17437534
REFERENCE   3  (bases 1 to 1790)
  AUTHORS   Matloubian,M., David,A., Engel,S., Ryan,J.E. and Cyster,J.G.
  TITLE     A transmembrane CXC chemokine is a ligand for HIV-coreceptor Bonzo
  JOURNAL   Nat Immunol 1 (4), 298-304 (2000)
   PUBMED   11017100
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DQ132631.1 and JAXUCZ010000008.1.
            
            On Mar 9, 2017 this sequence version replaced NM_001102587.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: DQ132631.1, SRR26360194.1769677.1
                                        [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1055              DQ132631.1         1-1055
            1056-1790           JAXUCZ010000008.1  132316261-132316995
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..1790
                     /gene="Cxcr6"
                     /note="C-X-C motif chemokine receptor 6"
                     /db_xref="GeneID:100124593"
                     /db_xref="RGD:1642118"
     exon            1..1790
                     /gene="Cxcr6"
                     /inference="alignment:Splign:2.1.0"
     CDS             1..1056
                     /gene="Cxcr6"
                     /note="chemokine receptor CXCR6; chemokine (C-X-C motif)
                     receptor 6"
                     /codon_start=1
                     /product="C-X-C chemokine receptor type 6"
                     /protein_id="NP_001096057.1"
                     /db_xref="GeneID:100124593"
                     /db_xref="RGD:1642118"
                     /translation="MDDGHQEKDLDDDVYGGDPWLFNNSSGNSQEHKRFLKFKEVFLP
                     CMYLVVFVLGLLGNSLVLIIYIFYQRLRSLTDVFLLNLPLADLVFVCTLPFWAYAGTY
                     EWVFGTAMCKTLRSMYAMNFYVSMLTLTCITVDRFVVVVQATKAFNRQAKWKIWGQVT
                     CLLIWVVSLLVSLPQIIYSRVGHIDRLICQFHNEAISTVVLVLQMTLGFFLPLLTMIL
                     CYSGIIKTLLHARNFQKHKSLKIIFLVVATFLLTQTPFNIAMLIQWISWEYSTITSFQ
                     YVVLVTEAIAYLRACLNPVLYAFVGLKFRKNLWKLMKDISCLSRLGVSSQWKSSEDNS
                     KTCSASHNAETTSMFQL"
ORIGIN      
        1 atggatgatg ggcatcaaga gaaagatctg gacgatgacg tctacggggg agatccctgg
       61 ctcttcaaca actccagtgg taacagccag gaacacaaac gcttcctaaa gttcaaggag
      121 gtttttctgc cctgcatgta tctggtagtg tttgtccttg gactgctagg gaactccctg
      181 gttctgatta tatacatttt ctaccagagg ctgaggagtc tgacagacgt gttcctgctg
      241 aacttgcccc tggctgacct ggtgtttgtc tgtactctgc ccttttgggc ctacgcaggc
      301 acctatgagt gggtctttgg cacagccatg tgcaaaactc ttcgaagcat gtatgcaatg
      361 aacttctacg tgtccatgct cactctcacc tgcatcacgg tggatcgttt cgttgtagtg
      421 gtccaggcta ccaaggcctt caacaggcag gctaagtgga agatctgggg ccaagtcact
      481 tgcttgctca tctgggtagt ctccctgctg gtttctttgc cacagatcat ctacagcaga
      541 gttggacata ttgacaggct tatctgtcag ttccacaacg aggcgatatc gactgtggtt
      601 cttgttctac agatgactct ggggttcttc ctgccattgc tcactatgat tctgtgctac
      661 tcaggcatta tcaagacctt gcttcacgct cgaaacttcc agaagcacaa atctctaaag
      721 atcatcttcc ttgtagtggc tacgttcctg ctgacccaga cacccttcaa cattgccatg
      781 ttaatccagt ggataagttg ggaatacagt accataacca gctttcagta tgtcgtctta
      841 gtgacagagg cgatagcata ccttcgggcc tgccttaacc ctgtactcta tgcctttgtt
      901 ggcttaaagt tccggaagaa cctctggaaa cttatgaagg acatcagctg cctctctcgt
      961 ctgggagtct caagtcagtg gaagtcttct gaggacaatt ccaagacttg ttctgcctcc
     1021 cacaatgcag agaccaccag tatgttccaa ttgtaatatg acttgccaca cttggagaag
     1081 ctaatatcag aattcttagg agcatggcta tatcctttgg acacaacaaa aaaagttttg
     1141 cttatagcat gtggagtatt atgtagaagt cactgaacac tgtggctggt atacaaagct
     1201 tctcagatat aaatataact tgttcttaat atctaagcct aatgctcaaa ggagaatgtc
     1261 tcgagatttt gaagcacttt ctctctttca tccctaagac tcaggttctc ttttaccaag
     1321 tttgaggcta aaagttgaag cagagctgca tcaacaaaga tgttgacagc aggtgatgat
     1381 gtgcagggct ccagagctca gaagagtctt aatgggcaag cagttgagag ttgagaagcc
     1441 ccccacacaa atactgctcc aatgagacta agctctgact catccacggg tctgtctgac
     1501 ttttgtatgg gtggatgctt atgttttatt ggaattgtct tgggaagagc agcaataagg
     1561 ggctgaaaat agaccagaat aaattagcta aatttcagtg gtccatgtaa tgctagcaaa
     1621 atgtataaaa cagagcttaa gaccataaca aagagaactc tggtggcttt gctcatctga
     1681 aaagaaaaat aaaaaaggaa ttttcccatg cctgtgagac ataatatgta catacaagta
     1741 tatcaagtat tttaagtatc atggctaaga aataaagcct tttaaaagtt
//
