LOCUS       NM_199406               1409 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus coxsackie virus and adenovirus receptor-like 1
            (Cxadrl1), mRNA.
ACCESSION   NM_199406 XM_342167
VERSION     NM_199406.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1409)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1409)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Mar 18, 2021 this sequence version replaced NM_199406.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC063181.1, SRR26360172.1079526.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760389,
                                           SAMEA5760393 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-130               JAXUCZ010000008.1  108470216-108470345 c
            131-300             JAXUCZ010000008.1  108459575-108459744 c
            301-505             JAXUCZ010000008.1  108457162-108457366 c
            506-675             JAXUCZ010000008.1  108454470-108454639 c
            676-880             JAXUCZ010000008.1  108452655-108452859 c
            881-1050            JAXUCZ010000008.1  108449560-108449729 c
            1051-1255           JAXUCZ010000008.1  108447444-108447648 c
            1256-1409           JAXUCZ010000008.1  108444792-108444945 c
FEATURES             Location/Qualifiers
     source          1..1409
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q31"
     gene            1..1409
                     /gene="Cxadrl1"
                     /note="coxsackie virus and adenovirus receptor-like 1"
                     /db_xref="GeneID:361873"
                     /db_xref="RGD:735201"
     exon            1..130
                     /gene="Cxadrl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             88..1260
                     /gene="Cxadrl1"
                     /note="coxsackievirus and adenovirus receptor homolog;
                     coxsackievirus and adenovirus receptor-like"
                     /codon_start=1
                     /product="coxsackie virus and adenovirus receptor-like 1
                     precursor"
                     /protein_id="NP_955438.2"
                     /db_xref="GeneID:361873"
                     /db_xref="RGD:735201"
                     /translation="MALLLGFLFFCGVTDLIGSVSITTPEQIVQEAGGEIVHLPCMFT
                     LSPEDQGPLDIEWLRLSGPNNEAIDHVVILYAADKIYSDFYQDLKGRVHFTSNDVVSG
                     DASIKIRNVRPADSGTYQCKVKKAPGVAKTTVQLTVIDITGSVNITTPEQTVQEAQGE
                     TVHLPCIFTYVSKDQGPLDVEWLRLSGPNNEAIDHVVILYSADKIHDDVYPDLKGRVY
                     FTSNDIRSGDASINITNVRLSDVGTYQCKVKTYPGIVNRNLQLAVTNILGSVSITTPE
                     QTIQKARGETVHLPCMFTLIPEDRGPLFIDWIQLTGPQNEVVNRMFIVYLADKVYDNF
                     YQDMKGRVYFTNNDVRSGDASINITNVQLSDAGTYQCGVSHDFGTAQRTIQLTVVG"
     exon            131..300
                     /gene="Cxadrl1"
                     /inference="alignment:Splign:2.1.0"
     exon            301..505
                     /gene="Cxadrl1"
                     /inference="alignment:Splign:2.1.0"
     exon            506..675
                     /gene="Cxadrl1"
                     /inference="alignment:Splign:2.1.0"
     exon            676..880
                     /gene="Cxadrl1"
                     /inference="alignment:Splign:2.1.0"
     exon            881..1050
                     /gene="Cxadrl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..1255
                     /gene="Cxadrl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1256..1409
                     /gene="Cxadrl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagtcctggt gccaatagat tcctagggaa gctaaggacc cagagcacag ccgagttcct
       61 ggtgctccag cccaccggac agccaccatg gcgcttctgc tgggcttcct gttcttttgt
      121 ggagtcacgg atctcattgg gagtgtgagc atcactactc cagagcagat agttcaggaa
      181 gctggagggg aaattgttca tctgccctgc atgttcaccc ttagccctga ggaccaagga
      241 ccactggaca tcgagtggct tcggctttca ggacctaaca atgaggcgat agaccatgtg
      301 gttattttgt atgctgcaga taaaatttat tctgacttct atcaagatct gaaaggacga
      361 gtgcatttta caagtaatga cgtcgtgtct ggtgacgcat ccataaaaat aagaaatgtt
      421 cgtcctgcag acagtggcac ctaccagtgc aaagtgaaaa aagcccctgg tgttgccaag
      481 acaaccgttc agctgacagt tattgatatc actgggagtg tgaacatcac tactccagag
      541 cagacagttc aggaagccca aggggaaact gtccatctgc cctgcatatt cacctatgtc
      601 tccaaggacc aaggaccact ggacgtcgag tggcttcggc tctcaggacc taacaatgag
      661 gcgatagacc atgtggttat tttatattct gcagacaaaa tccatgacga cgtctatcca
      721 gatctaaaag gacgagtgta ttttaccagt aatgacatca ggtctggtga cgcatccata
      781 aatattacaa acgtccggct ctcggacgtt ggcacctatc agtgcaaggt gaaaacgtac
      841 cctggcatcg tcaacaggaa cctccagctg gctgtcacta atatccttgg gagtgtgagc
      901 atcactactc cagagcagac aattcagaaa gcccgagggg aaactgtcca tctgccctgc
      961 atgttcaccc ttatccctga ggaccgtgga ccactgttca ttgactggat acagcttacc
     1021 ggacctcaga atgaggtggt gaaccgcatg tttattgtat atttagcaga caaggtttat
     1081 gacaacttct atcaagacat gaaaggacgt gtgtatttta caaataatga cgtcaggtct
     1141 ggtgacgcat ccataaatat aactaatgtt cagctctctg atgctggcac ctatcagtgc
     1201 ggagtatccc atgactttgg tactgcccag aggaccattc agctgacagt tgttggttga
     1261 tcatctgcct cagagattat atcacttgaa cttttaatta cgttttgctg atgatttgat
     1321 cctgtatctt caatgaaata tgccttgtgc tcctgcactc caccaaccta aaaagaaatc
     1381 cttaatgaga ataaactagt atttcataa
//
