LOCUS       NM_001013199            1852 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Rattus norvegicus CWC27 spliceosome associated cyclophilin (Cwc27),
            mRNA.
ACCESSION   NM_001013199 XM_342185
VERSION     NM_001013199.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1852)
  AUTHORS   Zhang,X., Yan,C., Zhan,X., Li,L., Lei,J. and Shi,Y.
  TITLE     Structure of the human activated spliceosome in three
            conformational states
  JOURNAL   Cell Res 28 (3), 307-322 (2018)
   PUBMED   29360106
REFERENCE   2  (bases 1 to 1852)
  AUTHORS   Davis,T.L., Walker,J.R., Campagna-Slater,V., Finerty,P.J.,
            Paramanathan,R., Bernstein,G., MacKenzie,F., Tempel,W., Ouyang,H.,
            Lee,W.H., Eisenmesser,E.Z. and Dhe-Paganon,S.
  TITLE     Structural and biochemical characterization of the human
            cyclophilin family of peptidyl-prolyl isomerases
  JOURNAL   PLoS Biol 8 (7), e1000439 (2010)
   PUBMED   20676357
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1852)
  AUTHORS   Jurica,M.S., Licklider,L.J., Gygi,S.R., Grigorieff,N. and
            Moore,M.J.
  TITLE     Purification and characterization of native spliceosomes suitable
            for three-dimensional structural analysis
  JOURNAL   RNA 8 (4), 426-439 (2002)
   PUBMED   11991638
REFERENCE   4  (bases 1 to 1852)
  AUTHORS   Sutherland,H.G., Mumford,G.K., Newton,K., Ford,L.V., Farrall,R.,
            Dellaire,G., Caceres,J.F. and Bickmore,W.A.
  TITLE     Large-scale identification of mammalian proteins localized to
            nuclear sub-compartments
  JOURNAL   Hum Mol Genet 10 (18), 1995-2011 (2001)
   PUBMED   11555636
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083774.1.
            
            On Apr 20, 2005 this sequence version replaced XM_342185.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083774.1, SRR8487231.76431.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q13"
     gene            1..1852
                     /gene="Cwc27"
                     /gene_synonym="Sdccag10"
                     /note="CWC27 spliceosome associated cyclophilin"
                     /db_xref="GeneID:361887"
                     /db_xref="RGD:1310697"
     exon            1..102
                     /gene="Cwc27"
                     /gene_synonym="Sdccag10"
                     /inference="alignment:Splign:2.1.0"
     CDS             61..1467
                     /gene="Cwc27"
                     /gene_synonym="Sdccag10"
                     /EC_number="5.2.1.8"
                     /note="peptidyl-prolyl cis-trans isomerase SDCCAG10;
                     peptidyl-prolyl cis-trans isomerase CWC27 homolog; PPIase
                     SDCCAG10; PPIase CWC27; serologically defined colon cancer
                     antigen 10; probable inactive peptidyl-prolyl cis-trans
                     isomerase CWC27 homolog; CWC27 spliceosome-associated
                     protein homolog"
                     /codon_start=1
                     /product="spliceosome-associated protein CWC27 homolog"
                     /protein_id="NP_001013217.1"
                     /db_xref="GeneID:361887"
                     /db_xref="RGD:1310697"
                     /translation="MSNIYIQEPPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLC
                     LEAYYDNTIFHRVVPGFIVQGGDPTGTGTGGESVYGAPFKDEFHSRLRFNRRGLVAMA
                     NAGPHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLTEVDIDDEERPRNPHR
                     IKSCEVLFNPFDDIIPREIKKPKKEKAEEEIKKLKPKGTKNFSLLSFGEEAEEEEEEV
                     NRVSQSMKGRSKSSHDLLKDDPHLSSVPAVESEKDDATGDLEDDAEDDSVEHDGSMEE
                     DEKNLMRERIAKRLKKDASANVKSAGDGEKKPASRSEELRKEARQLKRELLAAKQKKE
                     SATKAEKGSEEEEAVPDGPVAEYRREKQKYEALRKQQPKKGTSREDQTLALLSQFKSK
                     LTQAITEMPENCAEAEVEDDEGWMSHVLQFEDKTRKVKDASMQDSDTFEIYDPRNPVN
                     KRRREESKKLLREKKERR"
     exon            103..199
                     /gene="Cwc27"
                     /gene_synonym="Sdccag10"
                     /inference="alignment:Splign:2.1.0"
     exon            200..312
                     /gene="Cwc27"
                     /gene_synonym="Sdccag10"
                     /inference="alignment:Splign:2.1.0"
     exon            313..456
                     /gene="Cwc27"
                     /gene_synonym="Sdccag10"
                     /inference="alignment:Splign:2.1.0"
     exon            457..555
                     /gene="Cwc27"
                     /gene_synonym="Sdccag10"
                     /inference="alignment:Splign:2.1.0"
     exon            556..659
                     /gene="Cwc27"
                     /gene_synonym="Sdccag10"
                     /inference="alignment:Splign:2.1.0"
     exon            660..729
                     /gene="Cwc27"
                     /gene_synonym="Sdccag10"
                     /inference="alignment:Splign:2.1.0"
     exon            730..809
                     /gene="Cwc27"
                     /gene_synonym="Sdccag10"
                     /inference="alignment:Splign:2.1.0"
     exon            810..843
                     /gene="Cwc27"
                     /gene_synonym="Sdccag10"
                     /inference="alignment:Splign:2.1.0"
     exon            844..995
                     /gene="Cwc27"
                     /gene_synonym="Sdccag10"
                     /inference="alignment:Splign:2.1.0"
     exon            996..1093
                     /gene="Cwc27"
                     /gene_synonym="Sdccag10"
                     /inference="alignment:Splign:2.1.0"
     exon            1094..1203
                     /gene="Cwc27"
                     /gene_synonym="Sdccag10"
                     /inference="alignment:Splign:2.1.0"
     exon            1204..1304
                     /gene="Cwc27"
                     /gene_synonym="Sdccag10"
                     /inference="alignment:Splign:2.1.0"
     exon            1305..1818
                     /gene="Cwc27"
                     /gene_synonym="Sdccag10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagagacccg ccattcgctc gcggccacac taaggaacgg agtcttgagc agtgagcaag
       61 atgagtaaca tctacatcca ggagccgccc acgaatggga aggttttatt gaaaactacg
      121 gctggagata ttgacataga gctgtggtca aaagaggccc ctaaagcatg cagaaatttc
      181 attcagcttt gtttggaggc ctactatgac aacaccattt ttcatagagt cgtacctggc
      241 ttcatagtcc aaggtggaga tcccacaggc accgggactg gtggagaatc tgtctatgga
      301 gccccattca aggatgagtt tcactcacgg ttgcgtttta ataggagagg actggttgcc
      361 atggcaaatg ccggtccaca tgataatggc agccagtttt tctttaccct gggtcgagca
      421 gatgaactca acaataagca caccatcttt ggaaaggtta caggggatac agtgtacaac
      481 atgctacgcc tgacagaagt agacatcgat gatgaagaaa gaccccgcaa tccacataga
      541 atcaagagtt gtgaggtttt gtttaaccct tttgatgaca tcattccaag ggaaattaaa
      601 aagcccaaga aagagaaggc agaggaagaa atcaagaaat tgaaacccaa aggcacaaaa
      661 aattttagtt tactgtcttt tggagaagaa gctgaggagg aggaggagga agtgaaccga
      721 gtcagtcaga gcatgaaggg gagaagtaaa agcagccatg acctgctgaa ggacgatccg
      781 catctcagct ctgtcccggc cgtcgaaagt gaaaaagatg atgcaacagg agatttagaa
      841 gatgatgctg aagatgacag tgtagagcat gatggctcca tggaggagga tgagaagaac
      901 ctgatgagag aaagaatcgc aaaacggttg aagaaagatg caagtgccaa tgtgaagtca
      961 gccggagatg gggagaagaa gcccgcaagc cgaagtgaag agctcagaaa agaagcaagg
     1021 caattaaagc gggaactctt agcagcaaaa cagaagaaag aaagtgccac aaaagcagag
     1081 aaaggaagtg aagaggaaga agctgtccca gatggccctg ttgcagagta caggcgagaa
     1141 aagcagaagt atgaagcttt gaggaagcaa cagcccaaga agggaacttc ccgagaggat
     1201 cagaccctgg cactgctgag ccagtttaaa tctaagctca ctcaagccat caccgaaatg
     1261 cctgaaaact gtgctgaagc agaagttgaa gatgacgaag gctggatgtc ccacgtgctc
     1321 cagtttgaag acaagacccg gaaggtgaaa gacgcaagca tgcaggactc agacacgttt
     1381 gagatctatg atccccggaa tccagtgaac aaaagaagga gggaggaaag caaaaaactg
     1441 ctgagagaga aaaaggaaag gcggtgagcg gagccgtgat gccggaagcg gtggcgcctg
     1501 ccaggaatgt cgtgtgggaa atgtgtcagg gcctgtgttc tggtgttcag aaaacaggta
     1561 tctccttttg taaatttgaa atgatgtaag caaatgcttt tggttactga taattgacct
     1621 tttatattac taaatctgaa ataaaaccag tttctttcta gtttaaatgt taagtttgca
     1681 gattgcatag acctgtctgt ctatgccccc taccctgaga tgtgtgaagg agccttgttc
     1741 agatttttat aagagaaact cacagaaaga ataagggaaa cttccctgat actttaatat
     1801 aaaatcaaaa ttataaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//
